Wall clock time and date at job start Tue Mar 31 2020 08:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46490 * 109.47516 * 35.44872 * 3 2 1 5 5 C 1.36705 * 120.00384 * 263.81485 * 4 3 2 6 6 H 1.07996 * 120.00072 * 199.93987 * 5 4 3 7 7 C 1.39126 * 119.99328 * 19.94312 * 5 4 3 8 8 N 1.31318 * 120.00483 * 21.79823 * 7 5 4 9 9 Si 1.86804 * 119.99496 * 201.79269 * 7 5 4 10 10 H 1.48493 * 109.47086 * 60.00221 * 9 7 5 11 11 H 1.48502 * 109.46840 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47437 * 299.99981 * 9 7 5 13 13 C 1.34780 * 120.00146 * 83.81686 * 4 3 2 14 14 O 1.21770 * 120.00324 * 179.97438 * 13 4 3 15 15 C 1.46190 * 119.99764 * 0.02562 * 13 4 3 16 16 C 1.35056 * 119.99852 * 179.97438 * 15 13 4 17 17 C 1.47043 * 119.99962 * 179.97438 * 16 15 13 18 18 C 1.40920 * 119.77995 * 359.73034 * 17 16 15 19 19 C 1.35622 * 120.81444 * 179.74762 * 18 17 16 20 20 C 1.40783 * 120.07138 * 0.52620 * 19 18 17 21 21 C 1.40440 * 121.00193 * 179.76053 * 20 19 18 22 22 C 1.36179 * 119.73313 * 180.02562 * 21 20 19 23 23 C 1.39360 * 121.01334 * 359.95787 * 22 21 20 24 24 C 1.36098 * 120.94845 * 0.02562 * 23 22 21 25 25 C 1.40696 * 119.65753 * 0.02562 * 24 23 22 26 26 C 1.38849 * 119.78475 * 180.02562 * 17 16 15 27 27 H 4.40634 * 5.51412 * 180.02562 * 4 1 2 28 28 H 1.08997 * 109.47118 * 275.44601 * 3 2 1 29 29 H 1.09007 * 109.46766 * 155.45143 * 3 2 1 30 30 H 0.96996 * 119.99780 * 180.02562 * 8 7 5 31 31 H 1.08001 * 119.99794 * 359.97438 * 15 13 4 32 32 H 1.08000 * 119.99749 * 0.02562 * 16 15 13 33 33 H 1.07997 * 119.59037 * 359.97438 * 18 17 16 34 34 H 1.08003 * 119.96398 * 180.25965 * 19 18 17 35 35 H 1.07999 * 120.13146 * 0.05000 * 21 20 19 36 36 H 1.07991 * 119.49262 * 179.97438 * 22 21 20 37 37 H 1.07992 * 119.52517 * 180.02562 * 23 22 21 38 38 H 1.07991 * 120.16758 * 180.02562 * 24 23 22 39 39 H 1.08001 * 120.28377 * 359.95844 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1242 -0.8010 5 6 3.4836 -2.2970 -0.1913 6 1 4.1296 -2.9982 -0.6987 7 6 3.0061 -2.5873 1.0828 8 7 1.9229 -1.9941 1.5291 9 14 3.9060 -3.8212 2.1586 10 1 5.2950 -3.3521 2.3943 11 1 3.1999 -3.9521 3.4585 12 1 3.9378 -5.1407 1.4782 13 6 3.2410 -1.0029 -2.1391 14 8 3.6478 -1.9377 -2.8049 15 6 2.8687 0.2515 -2.7911 16 6 2.9755 0.3733 -4.1319 17 6 2.6005 1.6348 -4.7878 18 6 2.1249 2.7118 -4.0134 19 6 1.7779 3.8864 -4.5959 20 6 1.8799 4.0388 -5.9918 21 6 1.5212 5.2447 -6.6159 22 6 1.6296 5.3637 -7.9681 23 6 2.0932 4.3052 -8.7472 24 6 2.4505 3.1216 -8.1784 25 6 2.3511 2.9610 -6.7842 26 6 2.7116 1.7549 -6.1666 27 1 -1.0498 -0.0002 -0.0004 28 1 3.0094 -0.0967 1.0230 29 1 3.0089 0.9357 -0.4270 30 1 1.5904 -2.1963 2.4175 31 1 2.5083 1.0808 -2.2005 32 1 3.3356 -0.4562 -4.7224 33 1 2.0390 2.6017 -2.9425 34 1 1.4189 4.7043 -3.9888 35 1 1.1613 6.0745 -6.0257 36 1 1.3524 6.2926 -8.4440 37 1 2.1700 4.4260 -9.8176 38 1 2.8085 2.3098 -8.7941 39 1 3.0726 0.9265 -6.7581 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490984663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:47 Heat of formation + Delta-G solvation = 78.571013 kcal Electronic energy + Delta-G solvation = -22723.223700 eV Core-core repulsion = 19369.413041 eV Total energy + Delta-G solvation = -3353.810660 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.116 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.21953 -40.51497 -37.87573 -37.09199 -34.47209 -33.97534 -33.39286 -33.06622 -30.56263 -30.02851 -28.31810 -26.98225 -24.85387 -24.22593 -22.83860 -22.37423 -20.11970 -19.70034 -18.63659 -18.28245 -18.14616 -17.46015 -16.98820 -16.36753 -16.06228 -15.81264 -15.62134 -15.29437 -14.82762 -14.62137 -14.27414 -14.20893 -14.11608 -14.05739 -13.67532 -13.47670 -13.29907 -12.78914 -12.64489 -12.53564 -12.40670 -12.17145 -11.92263 -11.65649 -11.24259 -11.11697 -11.09999 -10.71842 -10.55371 -10.39452 -9.88447 -9.27430 -8.65613 -8.38542 -5.95176 -0.66072 -0.12202 0.69652 1.21462 1.41127 1.43347 1.52007 1.99616 2.15273 2.29811 2.37586 2.55415 3.08930 3.16417 3.24477 3.67179 3.72354 3.87199 3.91918 4.05192 4.11762 4.22754 4.31025 4.33666 4.43200 4.46948 4.64080 4.65008 4.87645 4.90045 5.01669 5.05861 5.17240 5.30681 5.36221 5.38873 5.40883 5.44613 5.61147 5.67974 5.72449 5.91257 6.05101 6.11612 6.42005 7.09248 7.13412 7.34594 7.96244 8.58984 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.030842 B = 0.002840 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.648540 B = 9855.548367 C =10521.153855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.157 4.157 3 C 0.232 3.768 4 N -0.435 5.435 5 C -0.355 4.355 6 H 0.076 0.924 7 C 0.005 3.995 8 N -0.861 5.861 9 Si 0.988 3.012 10 H -0.264 1.264 11 H -0.270 1.270 12 H -0.279 1.279 13 C 0.454 3.546 14 O -0.642 6.642 15 C -0.180 4.180 16 C -0.054 4.054 17 C -0.069 4.069 18 C -0.118 4.118 19 C -0.104 4.104 20 C -0.068 4.068 21 C -0.115 4.115 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.118 4.118 25 C -0.071 4.071 26 C -0.095 4.095 27 H 0.233 0.767 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.276 0.724 31 H 0.142 0.858 32 H 0.116 0.884 33 H 0.132 0.868 34 H 0.155 0.845 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.141 0.859 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.746 17.980 -12.637 22.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.158 4.158 3 C 0.110 3.890 4 N -0.150 5.150 5 C -0.482 4.482 6 H 0.094 0.906 7 C -0.200 4.200 8 N -0.496 5.496 9 Si 0.811 3.189 10 H -0.189 1.189 11 H -0.194 1.194 12 H -0.205 1.205 13 C 0.248 3.752 14 O -0.532 6.532 15 C -0.201 4.201 16 C -0.075 4.075 17 C -0.069 4.069 18 C -0.135 4.135 19 C -0.121 4.121 20 C -0.068 4.068 21 C -0.132 4.132 22 C -0.136 4.136 23 C -0.137 4.137 24 C -0.136 4.136 25 C -0.071 4.071 26 C -0.113 4.113 27 H 0.249 0.751 28 H 0.111 0.889 29 H 0.117 0.883 30 H 0.086 0.914 31 H 0.159 0.841 32 H 0.134 0.866 33 H 0.150 0.850 34 H 0.172 0.828 35 H 0.167 0.833 36 H 0.168 0.832 37 H 0.166 0.834 38 H 0.158 0.842 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.654 17.522 -12.684 21.793 hybrid contribution 0.144 -1.320 0.861 1.583 sum -2.511 16.202 -11.823 20.213 Atomic orbital electron populations 1.25119 0.96316 1.02076 1.02231 1.23341 0.94873 0.98658 0.98961 1.18359 0.84832 0.88465 0.97391 1.43785 1.54055 1.12443 1.04747 1.19567 1.29428 0.99049 1.00182 0.90630 1.26097 0.95228 1.00075 0.98582 1.70127 1.17557 1.42962 1.18972 0.85095 0.78807 0.77907 0.77117 1.18921 1.19440 1.20464 1.18721 0.84797 0.89485 0.82194 1.90583 1.54490 1.43866 1.64283 1.23050 1.04116 0.96724 0.96192 1.22222 0.95355 0.95739 0.94233 1.18997 1.00873 0.93195 0.93830 1.21199 0.98824 0.92926 1.00593 1.21205 0.99340 0.97920 0.93652 1.18503 0.99691 0.94722 0.93865 1.21346 0.99682 0.96332 0.95861 1.21281 0.98522 0.99942 0.93809 1.21230 0.98128 0.92805 1.01490 1.21336 1.00195 0.99317 0.92733 1.18281 1.00440 0.93642 0.94774 1.21702 0.98803 0.97440 0.93372 0.75054 0.88868 0.88261 0.91385 0.84055 0.86570 0.85036 0.82765 0.83317 0.83182 0.83380 0.84155 0.84268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.54 19.25 74.32 1.43 -8.11 16 2 C -0.16 -6.94 11.10 31.12 0.35 -6.59 16 3 C 0.23 10.31 4.79 84.58 0.40 10.72 16 4 N -0.44 -23.09 2.59 -650.53 -1.68 -24.78 16 5 C -0.35 -20.37 9.27 84.15 0.78 -19.59 16 6 H 0.08 4.67 7.42 -2.91 -0.02 4.65 16 7 C 0.01 0.28 4.83 84.98 0.41 0.69 16 8 N -0.86 -44.73 9.59 21.69 0.21 -44.52 16 9 Si 0.99 41.84 29.61 68.60 2.03 43.88 16 10 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 11 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 12 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 13 C 0.45 23.92 7.49 86.31 0.65 24.57 16 14 O -0.64 -38.82 15.90 -4.57 -0.07 -38.89 16 15 C -0.18 -7.36 8.46 23.60 0.20 -7.16 16 16 C -0.05 -2.00 9.44 23.85 0.23 -1.78 16 17 C -0.07 -2.07 5.86 -20.17 -0.12 -2.19 16 18 C -0.12 -3.11 9.31 22.32 0.21 -2.91 16 19 C -0.10 -2.27 9.73 22.29 0.22 -2.06 16 20 C -0.07 -1.51 5.75 -21.23 -0.12 -1.63 16 21 C -0.11 -1.89 9.75 22.33 0.22 -1.67 16 22 C -0.12 -1.63 9.95 22.06 0.22 -1.41 16 23 C -0.12 -1.74 9.95 22.04 0.22 -1.53 16 24 C -0.12 -2.20 9.77 22.37 0.22 -1.98 16 25 C -0.07 -1.70 5.74 -21.31 -0.12 -1.82 16 26 C -0.10 -2.53 9.53 22.90 0.22 -2.31 16 27 H 0.23 7.20 7.80 -4.43 -0.03 7.17 16 28 H 0.09 4.32 6.61 -2.39 -0.02 4.31 16 29 H 0.10 3.60 6.46 -2.38 -0.02 3.59 16 30 H 0.28 13.48 8.31 -92.71 -0.77 12.71 16 31 H 0.14 4.96 4.18 -2.91 -0.01 4.95 16 32 H 0.12 4.56 7.52 -2.91 -0.02 4.54 16 33 H 0.13 3.29 6.10 -2.91 -0.02 3.28 16 34 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 35 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 36 H 0.15 1.17 8.06 -2.92 -0.02 1.14 16 37 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 38 H 0.14 2.09 8.06 -2.92 -0.02 2.07 16 39 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -72.80 341.69 7.15 -65.65 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 1.07 Total: 25.41 kcal Atomic # 6 Polarization: -32.35 SS G_CDS: 5.60 Total: -26.75 kcal Atomic # 7 Polarization: -67.82 SS G_CDS: -1.47 Total: -69.30 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -0.07 Total: -38.89 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.88 kcal Total: -72.80 7.15 -65.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490984663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.223 kcal (2) G-P(sol) polarization free energy of solvation -72.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds