Wall clock time and date at job start Tue Mar 31 2020 08:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37814 * 119.92736 * 2 1 4 4 C 1.39881 * 119.85091 * 180.31701 * 3 2 1 5 5 C 1.47113 * 120.14359 * 179.69990 * 4 3 2 6 6 C 1.34892 * 119.99855 * 316.09984 * 5 4 3 7 7 C 1.46340 * 119.99783 * 349.02726 * 6 5 4 8 8 O 1.21702 * 120.00455 * 353.21654 * 7 6 5 9 9 N 1.34778 * 119.99649 * 173.22248 * 7 6 5 10 10 C 1.47584 * 134.49070 * 179.97438 * 9 7 6 11 11 C 1.53946 * 86.11546 * 204.65464 * 10 9 7 12 12 O 1.42904 * 113.73972 * 90.73883 * 11 10 9 13 13 C 1.50697 * 113.74286 * 221.93811 * 11 10 9 14 14 H 1.08002 * 119.99994 * 358.07770 * 13 11 10 15 15 C 1.37879 * 119.99988 * 178.07458 * 13 11 10 16 16 N 1.31506 * 120.00075 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99721 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.46979 * 90.00496 * 17 15 13 19 19 H 1.48505 * 109.46923 * 209.99717 * 17 15 13 20 20 H 1.48493 * 109.47386 * 330.00189 * 17 15 13 21 21 C 1.47923 * 134.50302 * 0.02701 * 9 7 6 22 22 C 1.39917 * 119.71267 * 359.42768 * 4 3 2 23 23 C 1.37771 * 119.85287 * 0.27664 * 22 4 3 24 24 C 1.38668 * 119.92886 * 179.74464 * 2 1 3 25 25 F 1.35093 * 119.85036 * 0.02562 * 24 2 1 26 26 H 1.08997 * 109.47301 * 270.26075 * 1 2 3 27 27 H 1.09005 * 109.47213 * 30.25693 * 1 2 3 28 28 H 1.08994 * 109.47427 * 150.25175 * 1 2 3 29 29 H 1.07996 * 120.07424 * 0.02669 * 3 2 1 30 30 H 1.07999 * 119.99853 * 136.09555 * 5 4 3 31 31 H 1.07993 * 119.99717 * 169.03318 * 6 5 4 32 32 H 1.08998 * 113.76998 * 90.35701 * 10 9 7 33 33 H 1.08995 * 113.87449 * 318.96959 * 10 9 7 34 34 H 0.96706 * 113.99820 * 181.92090 * 12 11 10 35 35 H 0.97005 * 119.99947 * 179.97438 * 16 15 13 36 36 H 1.09003 * 113.87171 * 41.07881 * 21 9 7 37 37 H 1.09004 * 113.76908 * 269.58726 * 21 9 7 38 38 H 1.07999 * 120.07171 * 180.24736 * 22 4 3 39 39 H 1.07997 * 119.92767 * 179.97438 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.1944 0.0000 4 6 3.5933 1.1925 -0.0067 5 6 4.3337 2.4637 -0.0134 6 6 3.9419 3.4682 -0.8241 7 6 2.9414 3.2218 -1.8632 8 8 2.5538 2.0884 -2.0784 9 7 2.4493 4.2501 -2.5821 10 6 1.4627 4.3708 -3.6731 11 6 2.2020 5.6654 -4.0573 12 8 3.2557 5.4674 -5.0020 13 6 1.2838 6.8005 -4.4307 14 1 0.2145 6.6489 -4.4415 15 6 1.8087 8.0326 -4.7584 16 7 3.1107 8.2171 -4.7457 17 14 0.6704 9.4398 -5.2206 18 1 0.3010 10.1992 -3.9990 19 1 1.3624 10.3433 -6.1747 20 1 -0.5568 8.8957 -5.8553 21 6 2.6815 5.7110 -2.5953 22 6 4.2852 -0.0236 -0.0012 23 6 3.5858 -1.2105 0.0049 24 6 2.1988 -1.2018 0.0054 25 9 1.5188 -2.3691 0.0100 26 1 -0.3634 0.0047 1.0276 27 1 -0.3634 0.8877 -0.5178 28 1 -0.3634 -0.8922 -0.5099 29 1 1.6546 2.1297 0.0004 30 1 5.1909 2.5927 0.6308 31 1 4.3667 4.4540 -0.7063 32 1 0.4423 4.5340 -3.3266 33 1 1.5363 3.5837 -4.4235 34 1 3.7417 6.2736 -5.2238 35 1 3.4801 9.0838 -4.9767 36 1 3.7289 5.9921 -2.4851 37 1 2.0185 6.2673 -1.9327 38 1 5.3652 -0.0317 -0.0023 39 1 4.1186 -2.1499 0.0087 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492832198.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:34 Heat of formation + Delta-G solvation = -44.954497 kcal Electronic energy + Delta-G solvation = -24456.674665 eV Core-core repulsion = 20666.738313 eV Total energy + Delta-G solvation = -3789.936352 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.81020 -39.87983 -38.89607 -37.29623 -34.02565 -33.75658 -32.47142 -32.25747 -29.79848 -28.26142 -26.96128 -25.59893 -25.29061 -23.47227 -21.97519 -20.98004 -19.48146 -18.01874 -17.50419 -17.41162 -16.81481 -16.21189 -15.65587 -15.56086 -15.11114 -14.77164 -14.31508 -14.13631 -13.93260 -13.68730 -13.39928 -13.25073 -13.07056 -12.84478 -12.55876 -12.36208 -12.26698 -12.00925 -11.80644 -11.60600 -11.38539 -11.10634 -11.04053 -10.92815 -10.56113 -10.32720 -9.78646 -9.59366 -9.28855 -8.82289 -8.67475 -8.39839 -7.90604 -7.80149 -6.42747 -4.53185 0.77433 1.42540 1.88200 3.11791 3.20517 3.23784 3.56541 3.72273 3.79139 4.15924 4.36729 4.73216 4.76263 4.80933 4.84906 4.98103 5.26456 5.35624 5.49961 5.57280 5.58209 5.62661 5.80792 5.90730 6.00538 6.07672 6.14299 6.18137 6.23753 6.29171 6.34306 6.47281 6.48804 6.57555 6.62940 6.76006 7.02741 7.06410 7.59379 7.78516 8.44392 8.50149 8.74974 9.18214 9.38871 10.63893 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.028370 B = 0.003167 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.707373 B = 8838.292204 C = 9324.772286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.131 4.131 3 C -0.005 4.005 4 C -0.066 4.066 5 C -0.049 4.049 6 C -0.182 4.182 7 C 0.547 3.453 8 O -0.552 6.552 9 N -0.624 5.624 10 C 0.112 3.888 11 C 0.238 3.762 12 O -0.572 6.572 13 C -0.538 4.538 14 H 0.071 0.929 15 C 0.073 3.927 16 N -0.898 5.898 17 Si 0.907 3.093 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.271 1.271 21 C 0.077 3.923 22 C -0.082 4.082 23 C -0.165 4.165 24 C 0.098 3.902 25 F -0.144 7.144 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.122 0.878 30 H 0.136 0.864 31 H 0.131 0.869 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.392 0.608 35 H 0.273 0.727 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.129 0.871 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.351 -9.381 11.167 14.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.132 4.132 3 C -0.024 4.024 4 C -0.066 4.066 5 C -0.069 4.069 6 C -0.202 4.202 7 C 0.339 3.661 8 O -0.434 6.434 9 N -0.356 5.356 10 C -0.010 4.010 11 C 0.196 3.804 12 O -0.384 6.384 13 C -0.576 4.576 14 H 0.089 0.911 15 C -0.130 4.130 16 N -0.538 5.538 17 Si 0.734 3.266 18 H -0.203 1.203 19 H -0.209 1.209 20 H -0.195 1.195 21 C -0.046 4.046 22 C -0.100 4.100 23 C -0.184 4.184 24 C 0.079 3.921 25 F -0.123 7.123 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.140 0.860 30 H 0.153 0.847 31 H 0.149 0.851 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.246 0.754 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.147 0.853 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.125 -10.616 11.126 15.419 hybrid contribution -0.234 1.378 -0.318 1.434 sum 0.892 -9.238 10.808 14.246 Atomic orbital electron populations 1.20656 0.90490 1.03323 1.02094 1.19692 0.96820 0.91755 1.04917 1.20842 0.92711 0.96668 0.92139 1.18888 0.93194 0.92960 1.01590 1.22220 0.96727 0.91199 0.96745 1.23129 1.00323 0.99783 0.97009 1.18040 0.82213 0.84077 0.81785 1.90823 1.62150 1.21272 1.69119 1.50265 1.41243 1.08248 1.35798 1.23433 0.92520 0.98364 0.86682 1.19848 0.85658 0.90382 0.84466 1.86071 1.49420 1.40006 1.62909 1.21505 0.93787 0.94616 1.47711 0.91076 1.25065 0.95452 0.98938 0.93555 1.69396 1.10842 1.25238 1.48308 0.86342 0.80595 0.81122 0.78528 1.20311 1.20900 1.19540 1.24391 1.01073 0.76914 1.02185 1.20956 0.99549 0.90717 0.98789 1.20833 0.92013 0.99402 1.06145 1.17639 0.89927 0.80682 1.03865 1.91435 1.80330 1.46558 1.93991 0.91365 0.90984 0.91498 0.85963 0.84675 0.85110 0.89637 0.91138 0.75376 0.91681 0.91243 0.89910 0.85328 0.85207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 9.83 36.00 0.35 -1.02 16 2 C -0.13 -1.94 5.88 -104.62 -0.62 -2.55 16 3 C -0.01 -0.08 6.24 -39.12 -0.24 -0.32 16 4 C -0.07 -0.95 4.53 -105.05 -0.48 -1.42 16 5 C -0.05 -0.63 9.81 -37.17 -0.36 -0.99 16 6 C -0.18 -2.75 9.70 -37.51 -0.36 -3.11 16 7 C 0.55 10.55 7.02 -13.00 -0.09 10.46 16 8 O -0.55 -11.70 12.88 5.19 0.07 -11.63 16 9 N -0.62 -12.67 3.62 -179.71 -0.65 -13.32 16 10 C 0.11 2.38 8.23 -2.96 -0.02 2.36 16 11 C 0.24 5.55 1.40 -90.86 -0.13 5.42 16 12 O -0.57 -14.45 13.48 -35.23 -0.48 -14.93 16 13 C -0.54 -13.16 8.61 -34.44 -0.30 -13.46 16 14 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 15 C 0.07 1.76 5.40 -17.82 -0.10 1.67 16 16 N -0.90 -22.15 11.20 55.43 0.62 -21.53 16 17 Si 0.91 19.04 29.54 -169.99 -5.02 14.02 16 18 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 19 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 21 C 0.08 1.58 7.88 -2.79 -0.02 1.56 16 22 C -0.08 -1.05 9.79 -39.12 -0.38 -1.43 16 23 C -0.17 -2.14 10.01 -39.58 -0.40 -2.54 16 24 C 0.10 1.42 7.25 -39.25 -0.28 1.14 16 25 F -0.14 -2.07 16.46 2.25 0.04 -2.03 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 28 H 0.07 0.82 7.63 -51.93 -0.40 0.42 16 29 H 0.12 1.92 7.03 -52.49 -0.37 1.55 16 30 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.13 1.75 7.90 -52.49 -0.41 1.34 16 32 H 0.09 1.66 8.09 -51.93 -0.42 1.24 16 33 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 34 H 0.39 9.94 6.60 45.56 0.30 10.24 16 35 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 36 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.08 1.62 8.09 -51.93 -0.42 1.20 16 38 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 338.21 15.07 5.10 5.10 Total: -1.00 -27.95 338.21 -7.98 -35.92 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -4.22 Total: 12.66 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -3.43 Total: -4.25 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: -0.03 Total: -34.86 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.41 Total: -26.56 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.02 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.95 -7.98 -35.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492832198.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.031 kcal (2) G-P(sol) polarization free energy of solvation -27.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds