Wall clock time and date at job start Tue Mar 31 2020 08:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37814 * 119.92736 * 2 1 4 4 C 1.39881 * 119.85091 * 180.31701 * 3 2 1 5 5 C 1.47113 * 120.14359 * 179.69990 * 4 3 2 6 6 C 1.34892 * 119.99855 * 316.09984 * 5 4 3 7 7 C 1.46340 * 119.99783 * 349.02726 * 6 5 4 8 8 O 1.21702 * 120.00455 * 353.21654 * 7 6 5 9 9 N 1.34778 * 119.99649 * 173.22248 * 7 6 5 10 10 C 1.47584 * 134.49070 * 179.97438 * 9 7 6 11 11 C 1.53946 * 86.11546 * 204.65464 * 10 9 7 12 12 O 1.42904 * 113.73972 * 90.73883 * 11 10 9 13 13 C 1.50697 * 113.74286 * 221.93811 * 11 10 9 14 14 H 1.08002 * 119.99994 * 358.07770 * 13 11 10 15 15 C 1.37879 * 119.99988 * 178.07458 * 13 11 10 16 16 N 1.31506 * 120.00075 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99721 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.46979 * 90.00496 * 17 15 13 19 19 H 1.48505 * 109.46923 * 209.99717 * 17 15 13 20 20 H 1.48493 * 109.47386 * 330.00189 * 17 15 13 21 21 C 1.47923 * 134.50302 * 0.02701 * 9 7 6 22 22 C 1.39917 * 119.71267 * 359.42768 * 4 3 2 23 23 C 1.37771 * 119.85287 * 0.27664 * 22 4 3 24 24 C 1.38668 * 119.92886 * 179.74464 * 2 1 3 25 25 F 1.35093 * 119.85036 * 0.02562 * 24 2 1 26 26 H 1.08997 * 109.47301 * 270.26075 * 1 2 3 27 27 H 1.09005 * 109.47213 * 30.25693 * 1 2 3 28 28 H 1.08994 * 109.47427 * 150.25175 * 1 2 3 29 29 H 1.07996 * 120.07424 * 0.02669 * 3 2 1 30 30 H 1.07999 * 119.99853 * 136.09555 * 5 4 3 31 31 H 1.07993 * 119.99717 * 169.03318 * 6 5 4 32 32 H 1.08998 * 113.76998 * 90.35701 * 10 9 7 33 33 H 1.08995 * 113.87449 * 318.96959 * 10 9 7 34 34 H 0.96706 * 113.99820 * 181.92090 * 12 11 10 35 35 H 0.97005 * 119.99947 * 179.97438 * 16 15 13 36 36 H 1.09003 * 113.87171 * 41.07881 * 21 9 7 37 37 H 1.09004 * 113.76908 * 269.58726 * 21 9 7 38 38 H 1.07999 * 120.07171 * 180.24736 * 22 4 3 39 39 H 1.07997 * 119.92767 * 179.97438 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.1944 0.0000 4 6 3.5933 1.1925 -0.0067 5 6 4.3337 2.4637 -0.0134 6 6 3.9419 3.4682 -0.8241 7 6 2.9414 3.2218 -1.8632 8 8 2.5538 2.0884 -2.0784 9 7 2.4493 4.2501 -2.5821 10 6 1.4627 4.3708 -3.6731 11 6 2.2020 5.6654 -4.0573 12 8 3.2557 5.4674 -5.0020 13 6 1.2838 6.8005 -4.4307 14 1 0.2145 6.6489 -4.4415 15 6 1.8087 8.0326 -4.7584 16 7 3.1107 8.2171 -4.7457 17 14 0.6704 9.4398 -5.2206 18 1 0.3010 10.1992 -3.9990 19 1 1.3624 10.3433 -6.1747 20 1 -0.5568 8.8957 -5.8553 21 6 2.6815 5.7110 -2.5953 22 6 4.2852 -0.0236 -0.0012 23 6 3.5858 -1.2105 0.0049 24 6 2.1988 -1.2018 0.0054 25 9 1.5188 -2.3691 0.0100 26 1 -0.3634 0.0047 1.0276 27 1 -0.3634 0.8877 -0.5178 28 1 -0.3634 -0.8922 -0.5099 29 1 1.6546 2.1297 0.0004 30 1 5.1909 2.5927 0.6308 31 1 4.3667 4.4540 -0.7063 32 1 0.4423 4.5340 -3.3266 33 1 1.5363 3.5837 -4.4235 34 1 3.7417 6.2736 -5.2238 35 1 3.4801 9.0838 -4.9767 36 1 3.7289 5.9921 -2.4851 37 1 2.0185 6.2673 -1.9327 38 1 5.3652 -0.0317 -0.0023 39 1 4.1186 -2.1499 0.0087 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492832198.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:33 Heat of formation + Delta-G solvation = -61.238062 kcal Electronic energy + Delta-G solvation = -24457.380774 eV Core-core repulsion = 20666.738313 eV Total energy + Delta-G solvation = -3790.642461 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.90911 -41.31605 -40.21126 -38.78597 -35.79366 -34.93092 -34.14749 -33.52380 -31.13759 -29.71040 -28.01107 -27.27401 -26.98052 -24.67993 -23.12752 -22.26713 -21.03332 -19.60242 -19.05776 -18.57076 -18.20067 -17.41483 -17.25027 -16.76627 -16.64626 -16.28356 -15.94419 -15.35512 -15.30171 -14.91930 -14.53239 -14.39842 -14.30984 -14.18537 -14.09045 -13.82239 -13.61629 -13.41331 -13.36164 -12.95412 -12.78744 -12.69002 -12.44302 -12.25282 -12.19057 -11.96662 -11.33594 -10.95839 -10.75105 -10.63023 -10.25181 -9.72639 -9.40892 -9.02764 -8.25984 -6.43027 -0.34348 0.36798 0.76911 1.46332 1.50404 1.59003 2.04469 2.34140 2.41965 2.70107 2.96873 3.30642 3.54826 3.69251 3.76718 3.85048 3.87953 4.19972 4.23005 4.33915 4.47306 4.52756 4.56245 4.61688 4.65297 4.75802 4.81750 4.88685 4.92466 4.99556 5.08813 5.11382 5.22138 5.24587 5.34198 5.41869 5.63093 5.72924 5.93991 5.98179 6.62223 6.90453 7.24282 7.31481 7.44797 8.79701 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.028370 B = 0.003167 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.707373 B = 8838.292204 C = 9324.772286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.148 4.148 3 C -0.023 4.023 4 C -0.088 4.088 5 C -0.012 4.012 6 C -0.211 4.211 7 C 0.541 3.459 8 O -0.578 6.578 9 N -0.629 5.629 10 C 0.112 3.888 11 C 0.218 3.782 12 O -0.587 6.587 13 C -0.558 4.558 14 H 0.070 0.930 15 C 0.035 3.965 16 N -0.915 5.915 17 Si 0.966 3.034 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.273 1.273 21 C 0.094 3.906 22 C -0.078 4.078 23 C -0.164 4.164 24 C 0.080 3.920 25 F -0.147 7.147 26 H 0.086 0.914 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.109 0.891 30 H 0.184 0.816 31 H 0.149 0.851 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.387 0.613 35 H 0.276 0.724 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.164 0.836 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.419 -9.515 12.602 15.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.149 4.149 3 C -0.041 4.041 4 C -0.088 4.088 5 C -0.032 4.032 6 C -0.232 4.232 7 C 0.335 3.665 8 O -0.461 6.461 9 N -0.362 5.362 10 C -0.010 4.010 11 C 0.176 3.824 12 O -0.399 6.399 13 C -0.596 4.596 14 H 0.088 0.912 15 C -0.166 4.166 16 N -0.555 5.555 17 Si 0.792 3.208 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.198 1.198 21 C -0.028 4.028 22 C -0.095 4.095 23 C -0.183 4.183 24 C 0.061 3.939 25 F -0.126 7.126 26 H 0.105 0.895 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.127 0.873 30 H 0.201 0.799 31 H 0.166 0.834 32 H 0.117 0.883 33 H 0.073 0.927 34 H 0.241 0.759 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.181 0.819 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.194 -10.761 12.578 16.698 hybrid contribution -0.560 1.274 -0.740 1.576 sum 1.635 -9.487 11.838 15.258 Atomic orbital electron populations 1.20668 0.89672 1.02873 1.03186 1.19950 0.97828 0.92012 1.05119 1.20857 0.93595 0.96300 0.93358 1.19240 0.93071 0.94495 1.01974 1.22706 0.96228 0.89252 0.94982 1.23040 1.00817 1.01624 0.97697 1.18785 0.82302 0.83288 0.82107 1.90811 1.63164 1.22073 1.70085 1.50265 1.41427 1.08438 1.36045 1.23366 0.93515 0.97028 0.87110 1.20134 0.85588 0.91111 0.85521 1.86055 1.50005 1.39922 1.63883 1.21725 0.93973 0.95407 1.48490 0.91228 1.25709 0.96687 1.00797 0.93398 1.69457 1.11827 1.25746 1.48441 0.85423 0.78713 0.78431 0.78258 1.19585 1.20902 1.19750 1.24119 1.01118 0.77279 1.00297 1.21353 1.01245 0.89775 0.97171 1.21211 0.91458 1.00850 1.04777 1.17892 0.90834 0.80504 1.04648 1.91424 1.80529 1.46537 1.94089 0.89507 0.91780 0.91491 0.87296 0.79934 0.83378 0.88265 0.92732 0.75867 0.91460 0.91153 0.89031 0.81875 0.82599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.73 9.83 71.23 0.70 -2.03 16 2 C -0.15 -4.36 5.88 -19.86 -0.12 -4.48 16 3 C -0.02 -0.69 6.24 22.57 0.14 -0.55 16 4 C -0.09 -2.33 4.53 -20.14 -0.09 -2.42 16 5 C -0.01 -0.28 9.81 23.83 0.23 -0.05 16 6 C -0.21 -6.01 9.70 23.61 0.23 -5.78 16 7 C 0.54 20.74 7.02 86.35 0.61 21.35 16 8 O -0.58 -24.67 12.88 -4.35 -0.06 -24.73 16 9 N -0.63 -25.72 3.62 -844.51 -3.05 -28.77 16 10 C 0.11 4.88 8.23 86.49 0.71 5.59 16 11 C 0.22 10.26 1.40 -10.89 -0.02 10.25 16 12 O -0.59 -30.24 13.48 -148.98 -2.01 -32.25 16 13 C -0.56 -27.43 8.61 25.60 0.22 -27.21 16 14 H 0.07 3.35 7.81 -2.91 -0.02 3.32 16 15 C 0.04 1.69 5.40 84.66 0.46 2.14 16 16 N -0.91 -45.00 11.20 21.45 0.24 -44.76 16 17 Si 0.97 38.68 29.54 68.60 2.03 40.71 16 18 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 19 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 20 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 21 C 0.09 3.87 7.88 86.41 0.68 4.55 16 22 C -0.08 -1.74 9.79 22.57 0.22 -1.52 16 23 C -0.16 -3.87 10.01 22.27 0.22 -3.64 16 24 C 0.08 2.25 7.25 22.48 0.16 2.41 16 25 F -0.15 -4.10 16.46 44.97 0.74 -3.36 16 26 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.06 1.69 8.08 -2.38 -0.02 1.67 16 28 H 0.07 1.66 7.63 -2.39 -0.02 1.64 16 29 H 0.11 3.50 7.03 -2.91 -0.02 3.48 16 30 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 31 H 0.15 3.64 7.90 -2.91 -0.02 3.62 16 32 H 0.10 3.94 8.09 -2.39 -0.02 3.92 16 33 H 0.05 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.39 20.07 6.60 -74.05 -0.49 19.58 16 35 H 0.28 12.85 8.31 -92.70 -0.77 12.08 16 36 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 37 H 0.09 3.55 8.09 -2.38 -0.02 3.53 16 38 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 39 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -60.48 338.21 2.84 -57.64 By element: Atomic # 1 Polarization: 36.30 SS G_CDS: 0.59 Total: 36.89 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 4.36 Total: -1.37 kcal Atomic # 7 Polarization: -70.72 SS G_CDS: -2.81 Total: -73.53 kcal Atomic # 8 Polarization: -54.92 SS G_CDS: -2.06 Total: -56.98 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.74 Total: -3.36 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Total: -60.48 2.84 -57.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492832198.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.600 kcal (2) G-P(sol) polarization free energy of solvation -60.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds