Wall clock time and date at job start Tue Mar 31 2020 08:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47258 * 2 1 4 4 C 1.50700 * 109.47111 * 239.99924 * 2 1 3 5 5 H 1.08003 * 119.99465 * 239.99990 * 4 2 1 6 6 C 1.37871 * 120.00161 * 60.00343 * 4 2 1 7 7 N 1.31518 * 119.99984 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00081 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46907 * 59.99720 * 8 6 4 10 10 H 1.48498 * 109.46939 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47161 * 299.99986 * 8 6 4 12 12 C 1.52996 * 109.47079 * 119.99888 * 2 1 3 13 13 N 1.46500 * 109.47152 * 299.99965 * 12 2 1 14 14 C 1.34780 * 120.00051 * 179.97438 * 13 12 2 15 15 O 1.21795 * 120.00252 * 0.02562 * 14 13 12 16 16 C 1.41319 * 119.99723 * 179.97438 * 14 13 12 17 17 C 1.35095 * 119.99476 * 180.02562 * 16 14 13 18 18 S 1.76202 * 119.99582 * 180.02562 * 17 16 14 19 19 C 1.76202 * 99.99823 * 174.81246 * 18 17 16 20 20 C 1.38936 * 120.07409 * 273.86484 * 19 18 17 21 21 C 1.38091 * 119.92176 * 179.76769 * 20 19 18 22 22 C 1.38304 * 120.07651 * 0.47986 * 21 20 19 23 23 C 1.38299 * 120.14860 * 359.77416 * 22 21 20 24 24 C 1.38084 * 120.07880 * 359.97438 * 23 22 21 25 25 H 1.08997 * 109.47492 * 300.00239 * 1 2 3 26 26 H 1.08998 * 109.47038 * 60.00330 * 1 2 3 27 27 H 1.08999 * 109.47262 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46831 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.46826 * 299.99800 * 3 2 1 30 30 H 1.08997 * 109.46610 * 59.99779 * 3 2 1 31 31 H 0.97001 * 119.99658 * 180.02562 * 7 6 4 32 32 H 1.09006 * 109.47635 * 179.97438 * 12 2 1 33 33 H 1.08999 * 109.47214 * 59.99799 * 12 2 1 34 34 H 0.96997 * 120.00065 * 359.97438 * 13 12 2 35 35 H 1.07991 * 120.00188 * 0.02562 * 16 14 13 36 36 H 1.08000 * 120.00012 * 0.02562 * 17 16 14 37 37 H 1.08002 * 120.04154 * 359.97199 * 20 19 18 38 38 H 1.08001 * 119.96568 * 180.25072 * 21 20 19 39 39 H 1.07997 * 119.92460 * 179.74240 * 22 21 20 40 40 H 1.08001 * 119.95514 * 179.97438 * 23 22 21 41 41 H 1.07998 * 120.03852 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.8281 -2.5199 -4.0081 10 1 1.8270 -0.4200 -5.2204 11 1 3.8075 -1.1191 -4.0076 12 6 2.0399 -0.7212 1.2492 13 7 1.5516 -0.0306 2.4454 14 6 1.8768 -0.4913 3.6695 15 8 2.5770 -1.4816 3.7814 16 6 1.4061 0.1753 4.8233 17 6 1.7325 -0.2863 6.0503 18 16 1.1451 0.5444 7.4890 19 6 1.7297 -0.5540 8.7366 20 6 0.9662 -1.6532 9.1098 21 6 1.4296 -2.5147 10.0846 22 6 2.6475 -2.2788 10.6960 23 6 3.4075 -1.1827 10.3305 24 6 2.9526 -0.3201 9.3529 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 0.7082 1.1608 -3.4844 32 1 3.1300 -0.7217 1.2491 33 1 1.6766 -1.7489 1.2493 34 1 0.9943 0.7583 2.3564 35 1 0.7856 1.0535 4.7242 36 1 2.3534 -1.1644 6.1494 37 1 0.0130 -1.8355 8.6359 38 1 0.8386 -3.3716 10.3724 39 1 3.0056 -2.9519 11.4610 40 1 4.3579 -1.0013 10.8104 41 1 3.5465 0.5359 9.0683 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493743666.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:20 Heat of formation + Delta-G solvation = 0.771230 kcal Electronic energy + Delta-G solvation = -21155.239289 eV Core-core repulsion = 17933.498929 eV Total energy + Delta-G solvation = -3221.740360 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.40664 -39.33962 -36.40850 -33.23808 -32.81954 -31.44353 -31.41591 -30.77739 -26.04478 -25.69938 -25.19868 -23.51236 -23.02479 -22.63324 -19.70995 -18.75781 -18.03823 -17.52088 -16.47613 -15.80846 -15.44401 -15.34211 -15.01422 -14.67510 -14.63291 -14.07506 -13.88946 -13.53841 -13.06846 -12.96919 -12.80598 -12.63522 -12.16020 -11.83602 -11.65173 -11.38111 -11.16592 -10.87772 -10.79314 -10.71434 -10.69438 -10.35226 -10.18855 -9.63809 -9.60631 -9.40477 -9.36483 -9.20833 -8.77249 -8.44028 -8.30581 -7.77956 -5.99978 -4.10013 0.48314 0.94249 1.13123 1.40671 2.13472 3.30038 3.31512 3.35682 3.39277 3.71365 4.04528 4.42991 4.43055 4.53299 4.64244 4.97170 5.00005 5.03301 5.26558 5.27868 5.50722 5.54863 5.86932 5.87707 5.90291 6.00731 6.01579 6.31288 6.36231 6.42782 6.54675 6.81421 6.85685 6.97609 7.04832 7.07526 7.38372 7.58303 7.71416 8.03488 8.09528 8.18903 8.40939 8.74420 8.90588 9.55553 11.01400 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.036265 B = 0.002246 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.916277 B =12461.091328 C =12750.053418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.131 3.869 13 N -0.709 5.709 14 C 0.543 3.457 15 O -0.563 6.563 16 C -0.186 4.186 17 C -0.096 4.096 18 S 0.000 6.000 19 C -0.148 4.148 20 C -0.066 4.066 21 C -0.129 4.129 22 C -0.091 4.091 23 C -0.129 4.129 24 C -0.065 4.065 25 H 0.007 0.993 26 H 0.085 0.915 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.085 0.915 30 H 0.007 0.993 31 H 0.260 0.740 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.399 0.601 35 H 0.129 0.871 36 H 0.145 0.855 37 H 0.134 0.866 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.326 -0.409 24.916 24.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.544 4.544 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.009 3.991 13 N -0.359 5.359 14 C 0.330 3.670 15 O -0.445 6.445 16 C -0.219 4.219 17 C -0.230 4.230 18 S 0.248 5.752 19 C -0.260 4.260 20 C -0.086 4.086 21 C -0.149 4.149 22 C -0.109 4.109 23 C -0.149 4.149 24 C -0.086 4.086 25 H 0.026 0.974 26 H 0.104 0.896 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.104 0.896 30 H 0.026 0.974 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.234 0.766 35 H 0.146 0.854 36 H 0.162 0.838 37 H 0.151 0.849 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.558 0.070 25.012 25.018 hybrid contribution 0.794 -1.283 -1.036 1.830 sum 0.235 -1.212 23.975 24.007 Atomic orbital electron populations 1.21831 0.97745 0.99188 1.00114 1.18360 0.92823 0.92780 0.90583 1.21833 0.98591 0.98346 1.00109 1.20947 1.31481 1.12080 0.89910 0.92512 1.24882 0.94889 0.94942 0.98836 1.69798 1.36630 1.22755 1.23296 0.86629 0.79227 0.79783 0.82188 1.20301 1.21341 1.20296 1.21716 0.98156 0.95808 0.83442 1.46251 1.52098 1.31480 1.06073 1.16853 0.81366 0.84768 0.84036 1.90798 1.39279 1.26990 1.87431 1.21600 1.05099 1.02912 0.92329 1.25954 0.99457 1.01660 0.95879 1.84504 1.68061 1.29068 0.93539 1.21917 0.99235 1.01191 1.03614 1.21621 0.98988 0.92426 0.95559 1.21256 0.96772 0.99781 0.97054 1.21405 0.94258 0.96795 0.98446 1.21249 1.00389 0.95225 0.98050 1.21598 0.93916 0.98595 0.94442 0.97440 0.89587 0.95448 0.95444 0.89590 0.97439 0.92967 0.92683 0.92689 0.76573 0.85356 0.83751 0.84854 0.85232 0.85454 0.85244 0.84832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.08 37.15 0.30 -2.69 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -2.99 8.08 37.16 0.30 -2.69 16 4 C -0.51 -13.37 8.01 -34.44 -0.28 -13.65 16 5 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.75 9.35 55.43 0.52 -23.24 16 8 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.13 2.86 4.50 -4.04 -0.02 2.84 16 13 N -0.71 -13.07 4.95 -63.31 -0.31 -13.38 16 14 C 0.54 9.88 7.55 -15.09 -0.11 9.76 16 15 O -0.56 -12.23 16.10 5.10 0.08 -12.14 16 16 C -0.19 -2.64 9.50 -39.53 -0.38 -3.01 16 17 C -0.10 -1.25 9.49 29.61 0.28 -0.97 16 18 S 0.00 0.00 22.01 -107.50 -2.37 -2.37 16 19 C -0.15 -1.46 5.44 -39.07 -0.21 -1.68 16 20 C -0.07 -0.58 9.79 -39.38 -0.39 -0.97 16 21 C -0.13 -0.96 10.04 -39.61 -0.40 -1.35 16 22 C -0.09 -0.62 10.04 -39.53 -0.40 -1.02 16 23 C -0.13 -0.94 10.04 -39.62 -0.40 -1.34 16 24 C -0.07 -0.57 9.79 -39.38 -0.39 -0.95 16 25 H 0.01 0.13 6.86 -51.93 -0.36 -0.22 16 26 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 30 H 0.01 0.13 6.86 -51.93 -0.36 -0.22 16 31 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 32 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.40 6.59 6.12 -40.82 -0.25 6.34 16 35 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.14 2.08 7.41 -52.49 -0.39 1.69 16 37 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 40 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 355.64 15.07 5.36 5.36 Total: -1.00 -29.67 355.64 -9.74 -39.41 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -5.75 Total: 5.35 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -2.25 Total: -14.84 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.21 Total: -36.62 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.08 Total: -12.14 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -2.37 Total: -2.37 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.67 -9.74 -39.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493743666.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.185 kcal (2) G-P(sol) polarization free energy of solvation -29.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds