Wall clock time and date at job start Tue Mar 31 2020 08:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47308 * 2 1 4 4 C 1.50707 * 109.46956 * 240.00143 * 2 1 3 5 5 H 1.08000 * 119.99554 * 239.99791 * 4 2 1 6 6 C 1.37873 * 119.99917 * 60.00048 * 4 2 1 7 7 N 1.31515 * 120.00444 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00043 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47276 * 89.99657 * 8 6 4 10 10 H 1.48494 * 109.47464 * 210.00084 * 8 6 4 11 11 H 1.48509 * 109.46965 * 330.00059 * 8 6 4 12 12 C 1.52999 * 109.47341 * 120.00326 * 2 1 3 13 13 N 1.46500 * 109.46707 * 299.99907 * 12 2 1 14 14 C 1.34783 * 119.99823 * 180.02562 * 13 12 2 15 15 O 1.21798 * 119.99928 * 359.97438 * 14 13 12 16 16 C 1.41314 * 119.99944 * 180.02562 * 14 13 12 17 17 C 1.35085 * 119.99729 * 180.02562 * 16 14 13 18 18 S 1.76194 * 120.00302 * 359.97438 * 17 16 14 19 19 C 1.76204 * 100.00315 * 185.19789 * 18 17 16 20 20 C 1.38943 * 120.07085 * 85.91636 * 19 18 17 21 21 C 1.38087 * 119.92088 * 179.97438 * 20 19 18 22 22 C 1.38297 * 120.07562 * 0.02562 * 21 20 19 23 23 C 1.38301 * 120.15781 * 0.27269 * 22 21 20 24 24 C 1.38097 * 120.06991 * 359.45066 * 23 22 21 25 25 H 1.09005 * 109.46709 * 300.00104 * 1 2 3 26 26 H 1.08997 * 109.47314 * 59.99609 * 1 2 3 27 27 H 1.08992 * 109.47310 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47522 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.47152 * 300.00157 * 3 2 1 30 30 H 1.08997 * 109.47095 * 59.99662 * 3 2 1 31 31 H 0.96999 * 120.00394 * 180.02562 * 7 6 4 32 32 H 1.08996 * 109.47280 * 180.02562 * 12 2 1 33 33 H 1.08992 * 109.47159 * 59.99612 * 12 2 1 34 34 H 0.97003 * 120.00498 * 359.97438 * 13 12 2 35 35 H 1.07998 * 120.00231 * 359.97438 * 16 14 13 36 36 H 1.08004 * 119.99948 * 179.97438 * 17 16 14 37 37 H 1.08005 * 120.03857 * 359.95635 * 20 19 18 38 38 H 1.07996 * 119.96207 * 180.02562 * 21 20 19 39 39 H 1.08005 * 119.92385 * 180.02562 * 22 21 20 40 40 H 1.07995 * 119.96708 * 179.70189 * 23 22 21 41 41 H 1.08000 * 120.03403 * 180.26871 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6035 8 14 2.3212 -1.1203 -4.0080 9 1 1.3426 -2.1616 -4.4119 10 1 2.4865 -0.1413 -5.1123 11 1 3.6292 -1.7583 -3.7123 12 6 2.0401 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4453 14 6 1.8778 -0.4909 3.6695 15 8 2.5780 -1.4812 3.7812 16 6 1.4063 0.1749 4.8233 17 6 1.7335 -0.2860 6.0502 18 16 2.7476 -1.7178 6.2118 19 6 2.7046 -1.9275 7.9608 20 6 1.6682 -2.6399 8.5513 21 6 1.6378 -2.8028 9.9222 22 6 2.6371 -2.2573 10.7073 23 6 3.6670 -1.5423 10.1234 24 6 3.7066 -1.3804 8.7526 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 0.7081 1.1609 -3.4844 32 1 3.1300 -0.7209 1.2494 33 1 1.6767 -1.7489 1.2492 34 1 0.9943 0.7582 2.3564 35 1 0.7850 1.0528 4.7243 36 1 1.3736 0.2231 6.9321 37 1 0.8870 -3.0656 7.9388 38 1 0.8327 -3.3568 10.3818 39 1 2.6112 -2.3865 11.7793 40 1 4.4432 -1.1135 10.7399 41 1 4.5135 -0.8256 8.2969 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493743667.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:22 Heat of formation + Delta-G solvation = 5.573982 kcal Electronic energy + Delta-G solvation = -21403.684075 eV Core-core repulsion = 18182.151978 eV Total energy + Delta-G solvation = -3221.532097 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.50633 -39.11968 -36.43666 -33.26459 -32.78186 -31.24563 -31.19162 -30.78092 -26.00058 -25.70162 -25.18218 -23.35451 -22.84282 -22.48256 -19.82473 -18.74533 -17.86193 -17.61008 -16.13295 -15.82388 -15.26712 -15.25189 -14.94464 -14.71060 -14.33791 -14.23078 -13.73214 -13.43514 -13.00238 -12.89435 -12.83566 -12.52751 -12.15112 -11.56554 -11.48705 -11.38699 -11.17361 -10.87390 -10.86560 -10.65314 -10.52014 -10.32574 -10.16931 -9.60873 -9.42986 -9.26010 -9.25461 -8.83181 -8.73933 -8.48067 -8.32945 -7.44682 -6.00082 -4.09926 0.70170 1.08918 1.18125 1.81401 2.56947 3.29863 3.36779 3.40866 3.48120 3.68681 3.98737 4.42795 4.59041 4.66571 4.77301 5.00638 5.14663 5.20664 5.26643 5.45854 5.47650 5.70068 5.90934 5.95638 6.04831 6.09642 6.15237 6.30909 6.37187 6.54655 6.60761 6.82201 6.85280 6.97192 7.04901 7.07526 7.38302 7.58099 7.71636 8.03430 8.09449 8.18346 8.40854 8.71414 8.90938 9.55749 11.01321 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.041248 B = 0.002385 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.663382 B =11738.870277 C =11930.335586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.504 4.504 5 H 0.057 0.943 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.132 3.868 13 N -0.709 5.709 14 C 0.528 3.472 15 O -0.534 6.534 16 C -0.210 4.210 17 C -0.112 4.112 18 S 0.128 5.872 19 C -0.204 4.204 20 C -0.069 4.069 21 C -0.133 4.133 22 C -0.099 4.099 23 C -0.133 4.133 24 C -0.070 4.070 25 H 0.006 0.994 26 H 0.085 0.915 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.085 0.915 30 H 0.006 0.994 31 H 0.259 0.741 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.399 0.601 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.130 0.870 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.198 -0.946 23.460 23.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.054 3.946 3 C -0.188 4.188 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.009 3.991 13 N -0.359 5.359 14 C 0.318 3.682 15 O -0.419 6.419 16 C -0.246 4.246 17 C -0.248 4.248 18 S 0.377 5.623 19 C -0.313 4.313 20 C -0.089 4.089 21 C -0.152 4.152 22 C -0.117 4.117 23 C -0.153 4.153 24 C -0.090 4.090 25 H 0.025 0.975 26 H 0.104 0.896 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.104 0.896 30 H 0.025 0.975 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.234 0.766 35 H 0.154 0.846 36 H 0.156 0.844 37 H 0.148 0.852 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.242 -2.269 22.594 22.741 hybrid contribution -0.757 0.871 0.228 1.177 sum 0.484 -1.397 22.821 22.869 Atomic orbital electron populations 1.21829 0.97782 0.99178 1.00063 1.18365 0.92788 0.92772 0.90664 1.21827 0.98591 0.98366 1.00063 1.20990 1.31372 1.12029 0.89889 0.92438 1.24884 0.94919 0.94929 0.98858 1.69803 1.36751 1.22783 1.23180 0.86574 0.79329 0.79379 0.82606 1.20733 1.21303 1.19903 1.21704 0.98143 0.95790 0.83447 1.46164 1.52221 1.31483 1.05986 1.17122 0.81733 0.84893 0.84493 1.90578 1.39515 1.27031 1.84743 1.21590 1.06932 1.04060 0.92003 1.26187 0.98815 0.99548 1.00239 1.86744 1.56293 1.28244 0.91028 1.23539 0.99017 1.04200 1.04520 1.21606 0.96868 0.95577 0.94847 1.21251 0.99283 1.00803 0.93903 1.21315 0.94125 0.96366 0.99936 1.21254 0.99023 1.00025 0.94980 1.21603 0.97227 0.96663 0.93470 0.97478 0.89634 0.95448 0.95442 0.89638 0.97474 0.93042 0.92673 0.92666 0.76586 0.84629 0.84376 0.85248 0.85716 0.85906 0.85730 0.85242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 2 C 0.05 1.27 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -2.96 8.08 37.16 0.30 -2.65 16 4 C -0.50 -13.25 8.01 -34.44 -0.28 -13.53 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.69 9.35 55.43 0.52 -23.17 16 8 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 C 0.13 2.82 4.50 -4.04 -0.02 2.80 16 13 N -0.71 -12.72 4.95 -63.31 -0.31 -13.03 16 14 C 0.53 9.21 7.54 -15.09 -0.11 9.10 16 15 O -0.53 -10.81 13.33 5.10 0.07 -10.74 16 16 C -0.21 -2.81 9.83 -39.53 -0.39 -3.20 16 17 C -0.11 -1.39 10.05 29.61 0.30 -1.09 16 18 S 0.13 1.77 18.58 -107.50 -2.00 -0.22 16 19 C -0.20 -2.32 5.45 -39.06 -0.21 -2.53 16 20 C -0.07 -0.70 9.79 -39.38 -0.39 -1.09 16 21 C -0.13 -1.12 10.04 -39.62 -0.40 -1.52 16 22 C -0.10 -0.77 10.04 -39.54 -0.40 -1.17 16 23 C -0.13 -1.11 10.04 -39.61 -0.40 -1.51 16 24 C -0.07 -0.70 9.79 -39.38 -0.39 -1.08 16 25 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 26 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 30 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 31 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 32 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.40 6.44 6.12 -40.82 -0.25 6.19 16 35 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.14 1.34 8.02 -52.48 -0.42 0.92 16 37 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 38 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.12 0.66 8.06 -52.48 -0.42 0.23 16 40 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 350.92 15.07 5.29 5.29 Total: -1.00 -29.08 350.92 -9.48 -38.56 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -5.78 Total: 4.82 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -2.24 Total: -17.31 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.21 Total: -36.20 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.07 Total: -10.74 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -2.00 Total: -0.22 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.08 -9.48 -38.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493743667.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.136 kcal (2) G-P(sol) polarization free energy of solvation -29.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds