Wall clock time and date at job start Tue Mar 31 2020 08:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47308 * 2 1 4 4 C 1.50707 * 109.46956 * 240.00143 * 2 1 3 5 5 H 1.08000 * 119.99554 * 239.99791 * 4 2 1 6 6 C 1.37873 * 119.99917 * 60.00048 * 4 2 1 7 7 N 1.31515 * 120.00444 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00043 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47276 * 89.99657 * 8 6 4 10 10 H 1.48494 * 109.47464 * 210.00084 * 8 6 4 11 11 H 1.48509 * 109.46965 * 330.00059 * 8 6 4 12 12 C 1.52999 * 109.47341 * 120.00326 * 2 1 3 13 13 N 1.46500 * 109.46707 * 299.99907 * 12 2 1 14 14 C 1.34783 * 119.99823 * 180.02562 * 13 12 2 15 15 O 1.21798 * 119.99928 * 359.97438 * 14 13 12 16 16 C 1.41314 * 119.99944 * 180.02562 * 14 13 12 17 17 C 1.35085 * 119.99729 * 180.02562 * 16 14 13 18 18 S 1.76194 * 120.00302 * 359.97438 * 17 16 14 19 19 C 1.76204 * 100.00315 * 185.19789 * 18 17 16 20 20 C 1.38943 * 120.07085 * 85.91636 * 19 18 17 21 21 C 1.38087 * 119.92088 * 179.97438 * 20 19 18 22 22 C 1.38297 * 120.07562 * 0.02562 * 21 20 19 23 23 C 1.38301 * 120.15781 * 0.27269 * 22 21 20 24 24 C 1.38097 * 120.06991 * 359.45066 * 23 22 21 25 25 H 1.09005 * 109.46709 * 300.00104 * 1 2 3 26 26 H 1.08997 * 109.47314 * 59.99609 * 1 2 3 27 27 H 1.08992 * 109.47310 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47522 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.47152 * 300.00157 * 3 2 1 30 30 H 1.08997 * 109.47095 * 59.99662 * 3 2 1 31 31 H 0.96999 * 120.00394 * 180.02562 * 7 6 4 32 32 H 1.08996 * 109.47280 * 180.02562 * 12 2 1 33 33 H 1.08992 * 109.47159 * 59.99612 * 12 2 1 34 34 H 0.97003 * 120.00498 * 359.97438 * 13 12 2 35 35 H 1.07998 * 120.00231 * 359.97438 * 16 14 13 36 36 H 1.08004 * 119.99948 * 179.97438 * 17 16 14 37 37 H 1.08005 * 120.03857 * 359.95635 * 20 19 18 38 38 H 1.07996 * 119.96207 * 180.02562 * 21 20 19 39 39 H 1.08005 * 119.92385 * 180.02562 * 22 21 20 40 40 H 1.07995 * 119.96708 * 179.70189 * 23 22 21 41 41 H 1.08000 * 120.03403 * 180.26871 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6035 8 14 2.3212 -1.1203 -4.0080 9 1 1.3426 -2.1616 -4.4119 10 1 2.4865 -0.1413 -5.1123 11 1 3.6292 -1.7583 -3.7123 12 6 2.0401 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4453 14 6 1.8778 -0.4909 3.6695 15 8 2.5780 -1.4812 3.7812 16 6 1.4063 0.1749 4.8233 17 6 1.7335 -0.2860 6.0502 18 16 2.7476 -1.7178 6.2118 19 6 2.7046 -1.9275 7.9608 20 6 1.6682 -2.6399 8.5513 21 6 1.6378 -2.8028 9.9222 22 6 2.6371 -2.2573 10.7073 23 6 3.6670 -1.5423 10.1234 24 6 3.7066 -1.3804 8.7526 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 0.7081 1.1609 -3.4844 32 1 3.1300 -0.7209 1.2494 33 1 1.6767 -1.7489 1.2492 34 1 0.9943 0.7582 2.3564 35 1 0.7850 1.0528 4.7243 36 1 1.3736 0.2231 6.9321 37 1 0.8870 -3.0656 7.9388 38 1 0.8327 -3.3568 10.3818 39 1 2.6112 -2.3865 11.7793 40 1 4.4432 -1.1135 10.7399 41 1 4.5135 -0.8256 8.2969 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493743667.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:22 Heat of formation + Delta-G solvation = -9.282812 kcal Electronic energy + Delta-G solvation = -21404.328314 eV Core-core repulsion = 18182.151978 eV Total energy + Delta-G solvation = -3222.176336 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.89941 -39.81221 -38.18480 -34.96671 -33.93065 -32.60063 -31.91582 -31.88994 -27.64683 -27.54533 -27.08567 -24.46323 -23.51637 -23.46854 -21.09141 -20.54736 -19.06110 -18.46718 -17.76318 -17.03129 -16.70567 -16.41803 -16.23264 -15.92024 -15.74482 -15.11375 -14.73430 -14.58308 -14.53883 -14.37179 -14.00892 -13.84944 -13.40661 -13.19745 -13.07344 -12.68909 -12.59318 -12.39549 -12.24960 -12.13466 -12.13338 -11.86897 -11.57003 -11.44349 -11.17296 -10.69782 -10.38790 -10.37097 -9.95833 -9.93521 -9.73434 -8.57036 -8.01217 -6.16725 -0.05025 0.10859 0.41273 0.88601 1.42725 1.45414 1.53817 1.64565 2.40484 2.42839 2.64981 2.78714 3.22102 3.94303 3.97571 4.07532 4.19962 4.42747 4.50557 4.52159 4.53947 4.55052 4.73305 4.79189 4.92497 4.93472 5.05646 5.06394 5.08146 5.18027 5.21840 5.38988 5.40133 5.41201 5.50525 5.65044 5.68406 5.68880 5.96247 6.16930 6.23496 6.45126 6.74821 6.87495 7.36957 7.50711 8.97657 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.041248 B = 0.002385 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.663382 B =11738.870277 C =11930.335586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.050 3.950 3 C -0.120 4.120 4 C -0.527 4.527 5 H 0.043 0.957 6 C 0.027 3.973 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.276 1.276 12 C 0.151 3.849 13 N -0.706 5.706 14 C 0.523 3.477 15 O -0.570 6.570 16 C -0.222 4.222 17 C -0.088 4.088 18 S 0.066 5.934 19 C -0.211 4.211 20 C -0.084 4.084 21 C -0.133 4.133 22 C -0.096 4.096 23 C -0.133 4.133 24 C -0.084 4.084 25 H 0.038 0.962 26 H 0.062 0.938 27 H 0.017 0.983 28 H 0.017 0.983 29 H 0.062 0.938 30 H 0.038 0.962 31 H 0.260 0.740 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.409 0.591 35 H 0.171 0.829 36 H 0.170 0.830 37 H 0.128 0.872 38 H 0.149 0.851 39 H 0.154 0.846 40 H 0.149 0.851 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.384 -0.292 26.244 26.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.049 3.951 3 C -0.178 4.178 4 C -0.566 4.566 5 H 0.061 0.939 6 C -0.173 4.173 7 N -0.538 5.538 8 Si 0.772 3.228 9 H -0.205 1.205 10 H -0.208 1.208 11 H -0.202 1.202 12 C 0.026 3.974 13 N -0.357 5.357 14 C 0.315 3.685 15 O -0.456 6.456 16 C -0.257 4.257 17 C -0.223 4.223 18 S 0.316 5.684 19 C -0.321 4.321 20 C -0.104 4.104 21 C -0.153 4.153 22 C -0.114 4.114 23 C -0.152 4.152 24 C -0.104 4.104 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.246 0.754 35 H 0.189 0.811 36 H 0.187 0.813 37 H 0.146 0.854 38 H 0.166 0.834 39 H 0.171 0.829 40 H 0.167 0.833 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.649 -1.598 25.382 25.441 hybrid contribution -0.537 0.602 -0.453 0.925 sum 0.112 -0.996 24.929 24.949 Atomic orbital electron populations 1.21666 0.97104 0.98618 1.00426 1.18369 0.93272 0.93061 0.90382 1.21665 0.97867 0.97857 1.00423 1.21273 1.31604 1.12073 0.91622 0.93863 1.25460 0.95224 0.95630 1.00977 1.69906 1.37035 1.23287 1.23569 0.85762 0.78632 0.78498 0.79930 1.20491 1.20774 1.20155 1.21203 0.96829 0.94976 0.84351 1.45972 1.52735 1.31781 1.05232 1.17745 0.81055 0.84562 0.85133 1.90601 1.40873 1.28581 1.85543 1.21606 1.08343 1.05362 0.90437 1.26436 0.96841 0.98020 1.01019 1.86954 1.57037 1.29811 0.94558 1.23262 1.00516 1.06107 1.02173 1.21706 0.96787 0.95973 0.95962 1.21556 1.00114 1.00505 0.93081 1.21728 0.93167 0.94954 1.01510 1.21570 0.99754 0.99598 0.94315 1.21723 0.97083 0.97133 0.94440 0.94328 0.91908 0.96415 0.96407 0.91913 0.94326 0.93042 0.94565 0.94533 0.75355 0.81129 0.81288 0.85360 0.83372 0.82870 0.83286 0.85115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.41 8.08 71.98 0.58 -4.83 16 2 C 0.05 2.34 0.50 -52.93 -0.03 2.31 16 3 C -0.12 -5.41 8.08 71.98 0.58 -4.83 16 4 C -0.53 -28.32 8.01 25.60 0.21 -28.11 16 5 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 6 C 0.03 1.43 5.15 84.65 0.44 1.86 16 7 N -0.90 -48.38 9.35 21.45 0.20 -48.18 16 8 Si 0.94 43.15 29.54 68.60 2.03 45.18 16 9 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 C 0.15 6.56 4.50 86.38 0.39 6.95 16 13 N -0.71 -24.92 4.95 -472.39 -2.34 -27.25 16 14 C 0.52 18.07 7.54 85.00 0.64 18.71 16 15 O -0.57 -23.62 13.33 -4.66 -0.06 -23.69 16 16 C -0.22 -5.54 9.83 22.30 0.22 -5.32 16 17 C -0.09 -2.02 10.05 67.09 0.67 -1.35 16 18 S 0.07 1.85 18.58 -56.49 -1.05 0.80 16 19 C -0.21 -4.64 5.45 22.61 0.12 -4.51 16 20 C -0.08 -1.60 9.79 22.40 0.22 -1.38 16 21 C -0.13 -1.88 10.04 22.25 0.22 -1.65 16 22 C -0.10 -1.16 10.04 22.30 0.22 -0.93 16 23 C -0.13 -1.84 10.04 22.25 0.22 -1.62 16 24 C -0.08 -1.56 9.79 22.40 0.22 -1.34 16 25 H 0.04 1.44 6.86 -2.38 -0.02 1.43 16 26 H 0.06 3.13 6.07 -2.39 -0.01 3.12 16 27 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 3.13 6.07 -2.38 -0.01 3.11 16 30 H 0.04 1.44 6.86 -2.39 -0.02 1.43 16 31 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 32 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.41 12.44 6.12 -92.71 -0.57 11.87 16 35 H 0.17 2.99 8.06 -2.91 -0.02 2.96 16 36 H 0.17 2.77 8.02 -2.91 -0.02 2.75 16 37 H 0.13 2.36 8.06 -2.91 -0.02 2.33 16 38 H 0.15 1.34 8.06 -2.91 -0.02 1.31 16 39 H 0.15 0.92 8.06 -2.91 -0.02 0.90 16 40 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 41 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -64.37 350.92 4.17 -60.20 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 0.46 Total: 18.99 kcal Atomic # 6 Polarization: -30.98 SS G_CDS: 4.93 Total: -26.05 kcal Atomic # 7 Polarization: -73.29 SS G_CDS: -2.14 Total: -75.43 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.06 Total: -23.69 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -1.05 Total: 0.80 kcal Total: -64.37 4.17 -60.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493743667.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.916 kcal (2) G-P(sol) polarization free energy of solvation -64.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds