Wall clock time and date at job start Tue Mar 31 2020 08:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50698 * 120.00126 * 2 1 4 4 N 1.46501 * 109.47313 * 125.00248 * 3 2 1 5 5 C 1.46498 * 119.99762 * 270.00623 * 4 3 2 6 6 C 1.50700 * 109.46818 * 269.99224 * 5 4 3 7 7 H 1.08001 * 120.00346 * 0.02562 * 6 5 4 8 8 C 1.37883 * 120.00156 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99714 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00138 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46967 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47135 * 119.99750 * 10 8 6 13 13 H 1.48502 * 109.46882 * 240.00222 * 10 8 6 14 14 C 1.34776 * 120.00150 * 89.99527 * 4 3 2 15 15 O 1.21589 * 120.00245 * 180.02562 * 14 4 3 16 16 N 1.34778 * 119.99815 * 0.02562 * 14 4 3 17 17 C 1.39945 * 119.99968 * 184.59076 * 16 14 4 18 18 C 1.38871 * 120.06812 * 324.90837 * 17 16 14 19 19 C 1.38113 * 119.92989 * 180.02562 * 18 17 16 20 20 C 1.38283 * 120.07054 * 359.97438 * 19 18 17 21 21 N 1.48023 * 119.92979 * 179.97438 * 20 19 18 22 22 O 1.21792 * 119.99918 * 0.02562 * 21 20 19 23 23 O 1.21797 * 119.99629 * 179.72196 * 21 20 19 24 24 C 1.38281 * 120.13798 * 0.27483 * 20 19 18 25 25 C 1.38116 * 120.07153 * 359.45353 * 24 20 19 26 26 H 1.08001 * 120.00121 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.00177 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00121 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47280 * 5.00125 * 3 2 1 30 30 H 1.09006 * 109.47325 * 245.00050 * 3 2 1 31 31 H 1.08993 * 109.47899 * 29.99380 * 5 4 3 32 32 H 1.08998 * 109.47096 * 149.99957 * 5 4 3 33 33 H 0.96997 * 119.99487 * 179.97438 * 9 8 6 34 34 H 0.97002 * 120.00298 * 4.58579 * 16 14 4 35 35 H 1.07995 * 120.03580 * 359.97438 * 18 17 16 36 36 H 1.07996 * 119.96467 * 179.97438 * 19 18 17 37 37 H 1.08001 * 119.96430 * 179.72583 * 24 20 19 38 38 H 1.07992 * 120.03741 * 180.27255 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5588 1.8648 2.4248 6 6 2.8443 3.3434 2.4805 7 1 3.3034 3.8370 1.6366 8 6 2.5194 4.0664 3.6087 9 7 1.9609 3.4653 4.6365 10 14 2.8726 5.8994 3.6774 11 1 3.4994 6.3308 2.4021 12 1 1.6021 6.6411 3.8796 13 1 3.7966 6.1835 4.8047 14 6 4.2497 0.8660 0.9823 15 8 5.0217 0.8878 1.9215 16 7 4.6498 0.3760 -0.2077 17 6 5.9207 -0.1954 -0.3375 18 6 6.9917 0.3192 0.3812 19 6 8.2448 -0.2466 0.2505 20 6 8.4335 -1.3248 -0.5946 21 7 9.7780 -1.9284 -0.7327 22 8 10.7165 -1.4758 -0.1021 23 8 9.9445 -2.8813 -1.4728 24 6 7.3701 -1.8363 -1.3155 25 6 6.1134 -1.2785 -1.1850 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 1.4888 1.6965 2.5460 32 1 3.0990 1.3602 3.2259 33 1 1.7327 3.9739 5.4304 34 1 4.0570 0.4194 -0.9743 35 1 6.8451 1.1615 1.0410 36 1 9.0782 0.1534 0.8089 37 1 7.5216 -2.6756 -1.9781 38 1 5.2824 -1.6812 -1.7450 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493896159.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:06 Heat of formation + Delta-G solvation = 28.021785 kcal Electronic energy + Delta-G solvation = -24133.053358 eV Core-core repulsion = 20366.201456 eV Total energy + Delta-G solvation = -3766.851902 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.14681 -40.71922 -38.90887 -36.53919 -36.11913 -34.95648 -33.33231 -32.34633 -31.49771 -30.67183 -27.79455 -26.29000 -25.51994 -23.56835 -23.23805 -22.00936 -20.34544 -19.70173 -19.35592 -18.63999 -18.22913 -17.50095 -17.33230 -16.64181 -15.57855 -15.44126 -15.03499 -14.87963 -14.57966 -14.32367 -13.90180 -13.80809 -13.35939 -13.12989 -12.97281 -12.40763 -12.01936 -11.81130 -11.55804 -11.47375 -11.28616 -11.19314 -11.13904 -11.01888 -10.75135 -10.70068 -10.31505 -9.83514 -9.69313 -9.42601 -9.41567 -8.66611 -8.56135 -7.95014 -6.17440 -4.23166 -0.16246 0.87622 1.32884 1.44772 2.19612 2.76537 3.11249 3.21304 3.29786 3.32551 3.57227 4.08534 4.29806 4.35338 4.40664 4.72127 4.79318 4.95917 5.09601 5.16466 5.18386 5.27065 5.39297 5.53061 5.69828 5.77704 5.88355 5.95322 6.10972 6.34134 6.43638 6.58917 6.63113 6.72095 7.12111 7.25140 7.38822 7.66931 7.78374 8.06059 8.21664 8.73382 8.88537 9.42640 10.90572 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.015525 B = 0.003543 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.082365 B = 7901.698272 C = 9349.560450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.177 4.177 3 C 0.135 3.865 4 N -0.596 5.596 5 C 0.260 3.740 6 C -0.532 4.532 7 H 0.058 0.942 8 C 0.063 3.937 9 N -0.892 5.892 10 Si 0.899 3.101 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.696 3.304 15 O -0.560 6.560 16 N -0.693 5.693 17 C 0.239 3.761 18 C -0.124 4.124 19 C -0.031 4.031 20 C -0.078 4.078 21 N 0.037 4.963 22 O -0.170 6.170 23 O -0.175 6.175 24 C -0.032 4.032 25 C -0.159 4.159 26 H 0.101 0.899 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.037 0.963 32 H 0.046 0.954 33 H 0.264 0.736 34 H 0.409 0.591 35 H 0.169 0.831 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.110 -8.455 -14.215 16.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.196 4.196 3 C 0.011 3.989 4 N -0.329 5.329 5 C 0.141 3.859 6 C -0.571 4.571 7 H 0.077 0.923 8 C -0.139 4.139 9 N -0.530 5.530 10 Si 0.726 3.274 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.398 3.602 15 O -0.435 6.435 16 N -0.342 5.342 17 C 0.139 3.861 18 C -0.145 4.145 19 C -0.051 4.051 20 C -0.163 4.163 21 N 0.553 4.447 22 O -0.385 6.385 23 O -0.389 6.389 24 C -0.052 4.052 25 C -0.181 4.181 26 H 0.119 0.881 27 H 0.114 0.886 28 H 0.122 0.878 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.247 0.753 35 H 0.186 0.814 36 H 0.172 0.828 37 H 0.171 0.829 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.818 -8.031 -13.179 15.540 hybrid contribution 0.046 0.807 -0.276 0.854 sum 1.864 -7.225 -13.455 15.385 Atomic orbital electron populations 1.23863 0.95798 1.02017 0.99391 1.23394 0.96570 0.98726 1.00942 1.20589 0.93256 0.96068 0.88972 1.47663 1.08472 1.62192 1.14546 1.19323 0.95498 0.93774 0.77258 1.21441 1.41054 0.93160 1.01413 0.92341 1.24928 0.94892 0.98876 0.95253 1.69935 1.41724 1.36225 1.05146 0.86432 0.77996 0.84724 0.78198 1.19819 1.20905 1.20771 1.15965 0.83623 0.78747 0.81829 1.90923 1.52597 1.61006 1.39019 1.43239 1.15154 1.62696 1.13068 1.17971 0.84798 0.89917 0.93377 1.21566 0.89199 1.02295 1.01479 1.20976 0.98858 0.91584 0.93731 1.21036 0.82940 1.02977 1.09331 1.43600 1.03072 0.99560 0.98422 1.94530 1.33678 1.65220 1.45033 1.94500 1.90698 1.18390 1.35264 1.20710 0.90108 0.98518 0.95864 1.20865 0.97354 0.96123 1.03776 0.88089 0.88576 0.87755 0.88647 0.91510 0.94485 0.93571 0.92605 0.75314 0.81401 0.82844 0.82946 0.83525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 14.32 29.02 0.42 -1.47 16 2 C -0.18 -2.10 9.85 -36.02 -0.35 -2.45 16 3 C 0.14 1.83 5.65 -5.19 -0.03 1.80 16 4 N -0.60 -11.09 2.44 -182.19 -0.44 -11.54 16 5 C 0.26 6.26 5.16 -5.20 -0.03 6.23 16 6 C -0.53 -14.05 9.39 -34.44 -0.32 -14.37 16 7 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -25.29 13.29 55.43 0.74 -24.55 16 10 Si 0.90 20.86 29.54 -169.99 -5.02 15.83 16 11 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.70 12.75 8.12 -86.92 -0.71 12.05 16 15 O -0.56 -12.56 13.36 5.29 0.07 -12.49 16 16 N -0.69 -8.96 5.22 -14.22 -0.07 -9.03 16 17 C 0.24 2.95 6.30 -83.69 -0.53 2.43 16 18 C -0.12 -1.71 8.69 -39.39 -0.34 -2.05 16 19 C -0.03 -0.40 9.55 -39.61 -0.38 -0.77 16 20 C -0.08 -0.97 6.85 -79.91 -0.55 -1.52 16 21 N 0.04 0.53 4.45 33.98 0.15 0.68 16 22 O -0.17 -2.57 18.44 -29.46 -0.54 -3.11 16 23 O -0.18 -2.51 18.44 -29.46 -0.54 -3.06 16 24 C -0.03 -0.32 9.55 -39.61 -0.38 -0.70 16 25 C -0.16 -1.50 9.97 -39.39 -0.39 -1.89 16 26 H 0.10 1.09 7.84 -52.49 -0.41 0.67 16 27 H 0.10 0.90 8.06 -52.49 -0.42 0.48 16 28 H 0.10 1.17 8.06 -52.49 -0.42 0.74 16 29 H 0.10 1.37 7.72 -51.93 -0.40 0.97 16 30 H 0.07 0.69 6.30 -51.93 -0.33 0.36 16 31 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 32 H 0.05 1.27 7.42 -51.93 -0.39 0.89 16 33 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.41 3.91 6.52 -40.82 -0.27 3.64 16 35 H 0.17 2.70 6.22 -52.49 -0.33 2.38 16 36 H 0.15 1.76 7.60 -52.49 -0.40 1.36 16 37 H 0.15 1.23 7.60 -52.49 -0.40 0.83 16 38 H 0.15 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 340.95 15.07 5.14 5.14 Total: -1.00 -31.74 340.95 -8.37 -40.10 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -4.15 Total: 3.13 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -3.69 Total: -1.11 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.37 Total: -44.44 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -1.02 Total: -18.66 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.74 -8.37 -40.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493896159.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.127 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds