Wall clock time and date at job start Tue Mar 31 2020 08:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47117 * 2 1 4 4 N 1.46507 * 109.47271 * 119.99757 * 2 1 3 5 5 C 1.46495 * 119.99723 * 294.97737 * 4 2 1 6 6 C 1.50698 * 109.47361 * 263.16824 * 5 4 2 7 7 H 1.07999 * 119.99538 * 0.02562 * 6 5 4 8 8 C 1.37869 * 120.00079 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00363 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00066 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47229 * 59.99305 * 10 8 6 12 12 H 1.48496 * 109.47212 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.46604 * 299.99931 * 10 8 6 14 14 C 1.34772 * 119.99668 * 114.97401 * 4 2 1 15 15 O 1.21659 * 120.00649 * 3.59867 * 14 4 2 16 16 C 1.46974 * 119.99753 * 183.59178 * 14 4 2 17 17 C 1.35814 * 125.13278 * 173.47994 * 16 14 4 18 18 C 1.46257 * 106.08114 * 180.02562 * 17 16 14 19 19 C 1.39734 * 134.13250 * 179.97438 * 18 17 16 20 20 C 1.37786 * 119.57445 * 180.02562 * 19 18 17 21 21 F 1.35102 * 119.87567 * 179.97438 * 20 19 18 22 22 C 1.39053 * 120.25105 * 359.74315 * 20 19 18 23 23 C 1.37757 * 120.72244 * 0.51650 * 22 20 19 24 24 C 1.39003 * 120.02695 * 359.48289 * 23 22 20 25 25 O 1.34789 * 133.12078 * 180.23099 * 24 23 22 26 26 H 1.08994 * 109.47260 * 300.00248 * 1 2 3 27 27 H 1.09001 * 109.46861 * 60.00634 * 1 2 3 28 28 H 1.09005 * 109.46997 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47169 * 239.99839 * 2 1 3 30 30 H 1.09003 * 109.46794 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.46992 * 299.99828 * 3 2 1 32 32 H 1.08994 * 109.47258 * 59.99751 * 3 2 1 33 33 H 1.09000 * 109.47577 * 23.17685 * 5 4 2 34 34 H 1.09003 * 109.46919 * 143.17237 * 5 4 2 35 35 H 0.97003 * 120.00398 * 180.02562 * 9 8 6 36 36 H 1.07992 * 126.96022 * 0.03598 * 17 16 14 37 37 H 1.07997 * 120.21373 * 0.04087 * 19 18 17 38 38 H 1.07995 * 119.63931 * 180.27523 * 22 20 19 39 39 H 1.07998 * 119.98593 * 179.76036 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7575 -0.1291 2.5239 6 6 2.9560 0.6631 2.9788 7 1 3.8250 0.7409 2.3423 8 6 2.9431 1.2885 4.2074 9 7 1.8851 1.1933 4.9827 10 14 4.4286 2.2711 4.7709 11 1 4.6866 3.3733 3.8099 12 1 4.1646 2.8391 6.1173 13 1 5.6158 1.3811 4.8337 14 6 2.7076 -1.8424 1.0751 15 8 2.9810 -2.2747 -0.0287 16 6 3.1292 -2.5763 2.2767 17 6 3.7140 -3.8020 2.2789 18 6 3.9550 -4.1335 3.6829 19 6 4.5167 -5.2307 4.3410 20 6 4.5973 -5.2304 5.7165 21 9 5.1388 -6.2883 6.3592 22 6 4.1279 -4.1433 6.4455 23 6 3.5673 -3.0580 5.8086 24 6 3.4755 -3.0364 4.4218 25 8 2.9934 -2.1340 3.5443 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 0.8863 0.5244 2.4773 34 1 1.5675 -0.9379 3.2295 35 1 1.8759 1.6337 5.8470 36 1 3.9529 -4.4090 1.4182 37 1 4.8855 -6.0734 3.7752 38 1 4.2001 -4.1516 7.5231 39 1 3.2030 -2.2218 6.3868 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522762185.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:29 Heat of formation + Delta-G solvation = -48.323944 kcal Electronic energy + Delta-G solvation = -25332.387016 eV Core-core repulsion = 21542.304554 eV Total energy + Delta-G solvation = -3790.082463 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.78675 -42.11461 -39.24387 -37.29713 -36.04799 -33.02840 -32.52342 -31.57563 -29.80873 -29.11308 -27.35219 -26.66335 -24.37009 -23.15035 -22.38106 -21.73437 -20.55336 -18.91259 -17.81303 -17.23807 -16.80796 -16.56899 -15.90610 -15.83061 -15.37358 -15.29866 -14.54284 -14.21816 -14.14123 -13.84356 -13.35040 -13.19503 -13.06719 -12.83751 -12.61721 -12.51719 -12.35087 -11.78869 -11.69824 -11.62748 -11.31433 -11.06405 -10.86871 -10.85592 -10.68032 -10.35137 -10.04674 -10.01726 -9.76066 -9.62617 -8.55212 -8.27667 -8.15072 -7.80550 -6.17449 -4.21839 0.76240 1.34327 2.12120 2.93764 3.22955 3.27559 3.31466 3.64592 3.65739 3.71472 4.25453 4.34029 4.66024 4.78874 5.04861 5.16758 5.23421 5.31852 5.42163 5.47657 5.57794 5.71783 5.79202 5.96075 6.01839 6.06316 6.08693 6.19288 6.26148 6.31877 6.33490 6.52691 6.62636 6.67724 6.74521 6.90876 7.21155 7.35174 7.50713 7.75385 8.04059 8.08375 8.60988 8.83077 9.43069 10.89969 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.012714 B = 0.005883 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.741931 B = 4758.213303 C = 6374.200216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.134 3.866 3 C -0.152 4.152 4 N -0.574 5.574 5 C 0.231 3.769 6 C -0.523 4.523 7 H 0.057 0.943 8 C 0.070 3.930 9 N -0.890 5.890 10 Si 0.888 3.112 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.590 3.410 15 O -0.551 6.551 16 C 0.021 3.979 17 C -0.153 4.153 18 C -0.118 4.118 19 C -0.105 4.105 20 C 0.071 3.929 21 F -0.143 7.143 22 C -0.130 4.130 23 C -0.068 4.068 24 C 0.057 3.943 25 O -0.120 6.120 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.043 0.957 34 H 0.053 0.947 35 H 0.264 0.736 36 H 0.165 0.835 37 H 0.137 0.863 38 H 0.144 0.856 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.268 -7.217 -1.051 7.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.031 3.969 3 C -0.210 4.210 4 N -0.303 5.303 5 C 0.112 3.888 6 C -0.561 4.561 7 H 0.076 0.924 8 C -0.132 4.132 9 N -0.528 5.528 10 Si 0.716 3.284 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.202 1.202 14 C 0.376 3.624 15 O -0.433 6.433 16 C -0.031 4.031 17 C -0.173 4.173 18 C -0.120 4.120 19 C -0.124 4.124 20 C 0.052 3.948 21 F -0.122 7.122 22 C -0.149 4.149 23 C -0.086 4.086 24 C 0.008 3.992 25 O -0.018 6.018 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.108 0.892 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.183 0.817 37 H 0.155 0.845 38 H 0.161 0.839 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.185 -7.082 -1.330 7.208 hybrid contribution 1.041 0.382 0.678 1.300 sum 1.226 -6.700 -0.653 6.842 Atomic orbital electron populations 1.22144 0.95414 1.01847 1.02321 1.20994 0.93693 0.93803 0.88395 1.22053 1.01747 0.95121 1.02066 1.48366 1.50940 1.20834 1.10138 1.19720 0.97711 0.95019 0.76362 1.21286 1.00975 1.31557 1.02323 0.92438 1.24806 0.95958 0.96259 0.96208 1.69906 1.28360 1.43716 1.10859 0.86706 0.83279 0.80502 0.77924 1.20168 1.21135 1.20180 1.16795 0.78881 0.81229 0.85448 1.90771 1.58498 1.69479 1.24595 1.22167 1.02378 0.94600 0.83953 1.22477 1.03537 0.96141 0.95192 1.19639 1.03527 0.95476 0.93319 1.20327 1.01387 0.98568 0.92143 1.17291 1.01529 0.85914 0.90092 1.91473 1.83983 1.54859 1.81840 1.20840 1.00966 0.92461 1.00624 1.19900 1.00036 0.99175 0.89501 1.19998 0.98198 0.88875 0.92170 1.84925 1.64512 1.39128 1.13260 0.91671 0.91962 0.92854 0.89225 0.92429 0.92892 0.90622 0.93872 0.92963 0.92634 0.81727 0.84493 0.83867 0.83477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.26 37.16 0.34 -2.05 16 2 C 0.13 2.36 3.22 -67.93 -0.22 2.14 16 3 C -0.15 -2.57 8.66 37.16 0.32 -2.25 16 4 N -0.57 -11.82 2.38 -168.89 -0.40 -12.22 16 5 C 0.23 5.29 3.91 -5.20 -0.02 5.27 16 6 C -0.52 -13.08 7.44 -34.44 -0.26 -13.33 16 7 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 8 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -23.47 13.29 55.43 0.74 -22.74 16 10 Si 0.89 20.30 29.54 -169.99 -5.02 15.28 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 C 0.59 12.43 7.58 -12.72 -0.10 12.33 16 15 O -0.55 -12.04 16.17 5.23 0.08 -11.96 16 16 C 0.02 0.42 6.70 -36.91 -0.25 0.17 16 17 C -0.15 -2.67 10.81 -37.23 -0.40 -3.07 16 18 C -0.12 -2.00 6.38 -105.19 -0.67 -2.67 16 19 C -0.11 -1.51 10.08 -39.19 -0.40 -1.91 16 20 C 0.07 1.00 7.29 -39.44 -0.29 0.71 16 21 F -0.14 -1.95 17.26 2.25 0.04 -1.91 16 22 C -0.13 -1.77 9.99 -39.46 -0.39 -2.17 16 23 C -0.07 -1.09 10.06 -39.47 -0.40 -1.48 16 24 C 0.06 1.07 7.40 -38.37 -0.28 0.78 16 25 O -0.12 -2.56 6.38 2.58 0.02 -2.54 16 26 H 0.06 1.03 6.91 -51.93 -0.36 0.67 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.09 1.58 6.91 -51.93 -0.36 1.22 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.42 7.09 -51.93 -0.37 1.05 16 33 H 0.04 1.03 6.49 -51.93 -0.34 0.69 16 34 H 0.05 1.29 5.41 -51.93 -0.28 1.01 16 35 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 36 H 0.17 2.51 8.06 -52.49 -0.42 2.08 16 37 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.15 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 334.30 15.07 5.04 5.04 Total: -1.00 -27.58 334.30 -7.24 -34.82 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -4.63 Total: 2.05 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -3.10 Total: -5.82 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.34 Total: -34.96 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: 0.10 Total: -14.50 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.58 -7.24 -34.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522762185.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.507 kcal (2) G-P(sol) polarization free energy of solvation -27.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds