Wall clock time and date at job start Tue Mar 31 2020 08:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47117 * 2 1 4 4 N 1.46507 * 109.47271 * 119.99757 * 2 1 3 5 5 C 1.46495 * 119.99723 * 294.97737 * 4 2 1 6 6 C 1.50698 * 109.47361 * 263.16824 * 5 4 2 7 7 H 1.07999 * 119.99538 * 0.02562 * 6 5 4 8 8 C 1.37869 * 120.00079 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00363 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00066 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47229 * 59.99305 * 10 8 6 12 12 H 1.48496 * 109.47212 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.46604 * 299.99931 * 10 8 6 14 14 C 1.34772 * 119.99668 * 114.97401 * 4 2 1 15 15 O 1.21659 * 120.00649 * 3.59867 * 14 4 2 16 16 C 1.46974 * 119.99753 * 183.59178 * 14 4 2 17 17 C 1.35814 * 125.13278 * 173.47994 * 16 14 4 18 18 C 1.46257 * 106.08114 * 180.02562 * 17 16 14 19 19 C 1.39734 * 134.13250 * 179.97438 * 18 17 16 20 20 C 1.37786 * 119.57445 * 180.02562 * 19 18 17 21 21 F 1.35102 * 119.87567 * 179.97438 * 20 19 18 22 22 C 1.39053 * 120.25105 * 359.74315 * 20 19 18 23 23 C 1.37757 * 120.72244 * 0.51650 * 22 20 19 24 24 C 1.39003 * 120.02695 * 359.48289 * 23 22 20 25 25 O 1.34789 * 133.12078 * 180.23099 * 24 23 22 26 26 H 1.08994 * 109.47260 * 300.00248 * 1 2 3 27 27 H 1.09001 * 109.46861 * 60.00634 * 1 2 3 28 28 H 1.09005 * 109.46997 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47169 * 239.99839 * 2 1 3 30 30 H 1.09003 * 109.46794 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.46992 * 299.99828 * 3 2 1 32 32 H 1.08994 * 109.47258 * 59.99751 * 3 2 1 33 33 H 1.09000 * 109.47577 * 23.17685 * 5 4 2 34 34 H 1.09003 * 109.46919 * 143.17237 * 5 4 2 35 35 H 0.97003 * 120.00398 * 180.02562 * 9 8 6 36 36 H 1.07992 * 126.96022 * 0.03598 * 17 16 14 37 37 H 1.07997 * 120.21373 * 0.04087 * 19 18 17 38 38 H 1.07995 * 119.63931 * 180.27523 * 22 20 19 39 39 H 1.07998 * 119.98593 * 179.76036 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7575 -0.1291 2.5239 6 6 2.9560 0.6631 2.9788 7 1 3.8250 0.7409 2.3423 8 6 2.9431 1.2885 4.2074 9 7 1.8851 1.1933 4.9827 10 14 4.4286 2.2711 4.7709 11 1 4.6866 3.3733 3.8099 12 1 4.1646 2.8391 6.1173 13 1 5.6158 1.3811 4.8337 14 6 2.7076 -1.8424 1.0751 15 8 2.9810 -2.2747 -0.0287 16 6 3.1292 -2.5763 2.2767 17 6 3.7140 -3.8020 2.2789 18 6 3.9550 -4.1335 3.6829 19 6 4.5167 -5.2307 4.3410 20 6 4.5973 -5.2304 5.7165 21 9 5.1388 -6.2883 6.3592 22 6 4.1279 -4.1433 6.4455 23 6 3.5673 -3.0580 5.8086 24 6 3.4755 -3.0364 4.4218 25 8 2.9934 -2.1340 3.5443 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 0.8863 0.5244 2.4773 34 1 1.5675 -0.9379 3.2295 35 1 1.8759 1.6337 5.8470 36 1 3.9529 -4.4090 1.4182 37 1 4.8855 -6.0734 3.7752 38 1 4.2001 -4.1516 7.5231 39 1 3.2030 -2.2218 6.3868 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522762185.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:28 Heat of formation + Delta-G solvation = -61.481694 kcal Electronic energy + Delta-G solvation = -25332.957579 eV Core-core repulsion = 21542.304554 eV Total energy + Delta-G solvation = -3790.653026 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.89974 -43.50618 -40.81787 -38.56224 -37.63813 -34.87936 -33.86095 -33.16732 -31.06089 -30.44870 -29.19350 -27.99215 -25.74893 -25.01117 -23.67172 -23.03617 -21.96209 -20.39581 -19.22489 -18.78532 -18.36487 -17.99895 -17.44941 -17.30359 -16.71441 -16.52214 -16.30926 -15.78345 -15.42466 -15.19684 -14.79210 -14.46859 -14.38491 -14.30420 -14.16384 -13.94448 -13.83445 -13.30915 -13.14779 -12.93554 -12.86668 -12.76587 -12.53241 -12.31419 -12.13997 -11.95101 -11.65583 -11.55940 -11.33522 -11.26635 -10.52779 -9.71613 -9.50034 -9.27975 -8.14410 -6.23544 -0.54531 0.10089 0.73965 1.38907 1.40805 1.46816 1.55827 2.10620 2.16675 2.43464 2.45128 3.01131 3.17363 3.37181 3.52923 3.82773 3.89531 4.06842 4.08340 4.23483 4.27082 4.39004 4.48235 4.63516 4.76067 4.80112 4.81833 4.91716 4.97559 4.99675 5.04148 5.10290 5.24128 5.27037 5.41367 5.46627 5.54681 5.70243 5.78967 6.07868 6.11005 6.38676 6.81445 7.04226 7.43461 8.92200 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.012714 B = 0.005883 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.741931 B = 4758.213303 C = 6374.200216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.125 3.875 3 C -0.143 4.143 4 N -0.579 5.579 5 C 0.251 3.749 6 C -0.521 4.521 7 H 0.042 0.958 8 C 0.033 3.967 9 N -0.913 5.913 10 Si 0.938 3.062 11 H -0.273 1.273 12 H -0.279 1.279 13 H -0.280 1.280 14 C 0.585 3.415 15 O -0.566 6.566 16 C -0.023 4.023 17 C -0.127 4.127 18 C -0.130 4.130 19 C -0.094 4.094 20 C 0.073 3.927 21 F -0.135 7.135 22 C -0.106 4.106 23 C -0.086 4.086 24 C 0.030 3.970 25 O -0.151 6.151 26 H 0.052 0.948 27 H 0.095 0.905 28 H 0.051 0.949 29 H 0.091 0.909 30 H 0.038 0.962 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.032 0.968 34 H 0.037 0.963 35 H 0.265 0.735 36 H 0.187 0.813 37 H 0.167 0.833 38 H 0.177 0.823 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.041 -8.326 -0.746 8.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.023 3.977 3 C -0.201 4.201 4 N -0.307 5.307 5 C 0.131 3.869 6 C -0.559 4.559 7 H 0.060 0.940 8 C -0.167 4.167 9 N -0.552 5.552 10 Si 0.764 3.236 11 H -0.199 1.199 12 H -0.204 1.204 13 H -0.206 1.206 14 C 0.373 3.627 15 O -0.450 6.450 16 C -0.074 4.074 17 C -0.147 4.147 18 C -0.131 4.131 19 C -0.112 4.112 20 C 0.054 3.946 21 F -0.114 7.114 22 C -0.125 4.125 23 C -0.105 4.105 24 C -0.019 4.019 25 O -0.051 6.051 26 H 0.071 0.929 27 H 0.114 0.886 28 H 0.071 0.929 29 H 0.109 0.891 30 H 0.058 0.942 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.204 0.796 37 H 0.184 0.816 38 H 0.195 0.805 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.954 -8.188 -1.037 8.308 hybrid contribution 0.853 0.594 0.647 1.224 sum 1.807 -7.594 -0.390 7.816 Atomic orbital electron populations 1.22077 0.93297 1.02122 1.03305 1.21281 0.95433 0.93768 0.87241 1.21974 1.00491 0.94880 1.02742 1.48401 1.51100 1.21054 1.10140 1.19281 0.96396 0.93910 0.77337 1.21328 1.00957 1.31490 1.02167 0.93989 1.25354 0.97903 0.97117 0.96332 1.69982 1.29614 1.44511 1.11126 0.85927 0.80577 0.79286 0.77786 1.19874 1.20397 1.20621 1.16983 0.78602 0.81271 0.85815 1.90734 1.59257 1.69881 1.25123 1.22146 1.05480 0.96045 0.83687 1.22799 1.00743 0.94916 0.96283 1.19727 1.04567 0.95991 0.92787 1.20605 0.99766 0.98309 0.92567 1.17328 1.01143 0.86066 0.90083 1.91504 1.83777 1.54456 1.81636 1.21170 0.98163 0.90924 1.02218 1.20047 1.01475 1.00317 0.88650 1.20524 0.98972 0.89299 0.93105 1.84819 1.65755 1.40617 1.13905 0.92919 0.88634 0.92944 0.89073 0.94238 0.89206 0.92822 0.95019 0.94566 0.92547 0.79564 0.81564 0.80532 0.83765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.41 9.26 71.98 0.67 -3.75 16 2 C 0.12 4.40 3.22 44.99 0.15 4.55 16 3 C -0.14 -4.83 8.66 71.98 0.62 -4.21 16 4 N -0.58 -24.58 2.38 -806.49 -1.92 -26.50 16 5 C 0.25 11.98 3.91 85.63 0.33 12.31 16 6 C -0.52 -26.89 7.44 25.60 0.19 -26.70 16 7 H 0.04 2.26 7.81 -2.91 -0.02 2.24 16 8 C 0.03 1.74 5.46 84.65 0.46 2.20 16 9 N -0.91 -49.10 13.29 21.44 0.28 -48.81 16 10 Si 0.94 42.03 29.54 68.60 2.03 44.05 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 12 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 14 C 0.59 25.38 7.58 86.53 0.66 26.04 16 15 O -0.57 -25.05 16.17 -4.22 -0.07 -25.12 16 16 C -0.02 -0.96 6.70 24.00 0.16 -0.80 16 17 C -0.13 -4.38 10.81 23.79 0.26 -4.12 16 18 C -0.13 -4.24 6.38 -20.23 -0.13 -4.37 16 19 C -0.09 -2.44 10.08 22.52 0.23 -2.21 16 20 C 0.07 1.83 7.29 22.36 0.16 1.99 16 21 F -0.14 -3.18 17.26 44.97 0.78 -2.41 16 22 C -0.11 -2.63 9.99 22.35 0.22 -2.40 16 23 C -0.09 -2.73 10.06 22.34 0.22 -2.50 16 24 C 0.03 1.13 7.40 23.05 0.17 1.30 16 25 O -0.15 -6.69 6.38 -13.68 -0.09 -6.78 16 26 H 0.05 1.67 6.91 -2.39 -0.02 1.66 16 27 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 29 H 0.09 3.20 6.91 -2.39 -0.02 3.18 16 30 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.05 2.04 7.09 -2.39 -0.02 2.02 16 33 H 0.03 1.58 6.49 -2.39 -0.02 1.56 16 34 H 0.04 1.89 5.41 -2.39 -0.01 1.88 16 35 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 36 H 0.19 5.41 8.06 -2.91 -0.02 5.38 16 37 H 0.17 3.30 8.06 -2.91 -0.02 3.28 16 38 H 0.18 3.13 8.06 -2.91 -0.02 3.11 16 39 H 0.14 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -60.36 334.30 6.47 -53.89 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 1.08 Total: 14.34 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: 4.38 Total: -2.67 kcal Atomic # 7 Polarization: -73.68 SS G_CDS: -1.63 Total: -75.31 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -0.16 Total: -31.89 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.78 Total: -2.41 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Total: -60.36 6.47 -53.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522762185.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.596 kcal (2) G-P(sol) polarization free energy of solvation -60.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds