Wall clock time and date at job start Tue Mar 31 2020 08:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.47212 * 2 1 4 4 C 1.33395 * 125.20454 * 89.99539 * 3 2 1 5 5 C 1.38420 * 114.91986 * 179.78847 * 4 3 2 6 6 C 1.33390 * 114.92367 * 0.43574 * 5 4 3 7 7 C 1.50701 * 125.20460 * 179.85690 * 6 5 4 8 8 N 1.46899 * 109.46845 * 83.98723 * 7 6 5 9 9 C 1.46899 * 110.99847 * 76.23599 * 8 7 6 10 10 C 1.50701 * 109.46876 * 189.99358 * 9 8 7 11 11 H 1.08005 * 120.00208 * 0.02562 * 10 9 8 12 12 C 1.37873 * 120.00008 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00337 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00224 * 180.02562 * 12 10 9 15 15 H 1.48490 * 109.47469 * 89.99873 * 14 12 10 16 16 H 1.48503 * 109.47101 * 209.99886 * 14 12 10 17 17 H 1.48504 * 109.46724 * 329.99716 * 14 12 10 18 18 C 1.46904 * 110.99660 * 200.18686 * 8 7 6 19 19 C 1.50702 * 109.46994 * 72.39659 * 18 8 7 20 20 C 1.34513 * 125.79225 * 90.48642 * 19 18 8 21 21 C 1.41381 * 106.84175 * 179.97438 * 20 19 18 22 22 C 1.34516 * 106.84039 * 0.02562 * 21 20 19 23 23 O 1.34302 * 108.42246 * 359.73064 * 22 21 20 24 24 S 1.75886 * 109.59259 * 359.59017 * 6 5 4 25 25 H 1.09007 * 109.46597 * 59.99928 * 1 2 3 26 26 H 1.08998 * 109.47676 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47222 * 300.00432 * 1 2 3 28 28 H 1.08997 * 109.47222 * 239.99568 * 2 1 3 29 29 H 1.08999 * 109.46294 * 119.99996 * 2 1 3 30 30 H 1.08004 * 122.53583 * 0.02660 * 4 3 2 31 31 H 1.07999 * 122.53872 * 180.27137 * 5 4 3 32 32 H 1.09002 * 109.46696 * 323.98796 * 7 6 5 33 33 H 1.09000 * 109.46997 * 203.98799 * 7 6 5 34 34 H 1.08992 * 109.47005 * 309.99511 * 9 8 7 35 35 H 1.09003 * 109.47017 * 69.99923 * 9 8 7 36 36 H 0.96993 * 120.00535 * 179.97438 * 13 12 10 37 37 H 1.09003 * 109.47180 * 192.39020 * 18 8 7 38 38 H 1.08995 * 109.47251 * 312.39176 * 18 8 7 39 39 H 1.07994 * 126.57743 * 0.03743 * 20 19 18 40 40 H 1.07997 * 126.57923 * 179.97438 * 21 20 19 41 41 H 1.08005 * 125.79139 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2886 2.1458 1.0900 5 6 2.7470 3.4283 0.8428 6 6 2.8544 3.7480 -0.4477 7 6 3.3250 5.0781 -0.9771 8 7 4.7933 5.0964 -1.0196 9 6 5.2967 4.3157 -2.1576 10 6 6.7894 4.1509 -2.0326 11 1 7.3119 4.5827 -1.1917 12 6 7.4881 3.4482 -2.9912 13 7 6.8520 2.9220 -4.0150 14 14 9.3384 3.2433 -2.8359 15 1 9.6370 2.0077 -2.0685 16 1 9.9406 3.1429 -4.1897 17 1 9.9084 4.4168 -2.1264 18 6 5.3016 6.4741 -1.0604 19 6 5.1113 7.1198 0.2880 20 6 6.0006 7.1104 1.2972 21 6 5.4160 7.8296 2.3649 22 6 4.2042 8.2350 1.9444 23 8 4.0273 7.8070 0.6838 24 16 2.3699 2.3769 -1.4372 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 2.1526 1.7600 2.0895 31 1 2.9962 4.1189 1.6350 32 1 2.9705 5.8752 -0.3236 33 1 2.9305 5.2295 -1.9818 34 1 4.8221 3.3345 -2.1634 35 1 5.0652 4.8368 -3.0866 36 1 7.3435 2.4279 -4.6896 37 1 6.3623 6.4628 -1.3113 38 1 4.7558 7.0406 -1.8148 39 1 6.9746 6.6440 1.2924 40 1 5.8573 8.0169 3.3326 41 1 3.4958 8.8114 2.5209 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000535063129.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:27:50 Heat of formation + Delta-G solvation = 28.585939 kcal Electronic energy + Delta-G solvation = -22406.176696 eV Core-core repulsion = 19185.642472 eV Total energy + Delta-G solvation = -3220.534224 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.38372 -39.35929 -38.16415 -34.95276 -34.51665 -33.81436 -31.79544 -30.69876 -28.63482 -27.08666 -25.78883 -24.39326 -23.11409 -22.63069 -22.38831 -21.17607 -19.53710 -18.63900 -18.19747 -17.75733 -17.17937 -16.65395 -16.29321 -16.08540 -15.55237 -15.37876 -15.01665 -14.85909 -14.34987 -14.04654 -13.76014 -13.65958 -13.58686 -13.54170 -13.28687 -13.06618 -12.90578 -12.68959 -12.64026 -12.50227 -12.42898 -12.17389 -11.96936 -11.75397 -11.47067 -11.31194 -10.74189 -10.60631 -9.44738 -9.32232 -9.24785 -9.11068 -8.18842 -6.28232 0.12659 0.76014 0.89314 1.18517 1.41287 1.42437 1.52927 1.80035 1.91949 2.17084 2.40860 3.14407 3.41131 3.83498 3.86978 3.94257 4.12977 4.22131 4.24869 4.28306 4.44912 4.46562 4.52054 4.59430 4.69430 4.76408 4.91117 4.99329 5.02184 5.07426 5.12330 5.15945 5.23397 5.31228 5.35321 5.36255 5.46740 5.63707 5.71871 5.72619 6.02050 6.20480 6.31916 6.50290 6.85587 7.40465 8.92066 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.008251 B = 0.006238 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3392.827964 B = 4487.566324 C = 7154.617569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.053 4.053 3 C -0.176 4.176 4 C -0.143 4.143 5 C -0.123 4.123 6 C -0.171 4.171 7 C 0.126 3.874 8 N -0.527 5.527 9 C 0.206 3.794 10 C -0.522 4.522 11 H 0.064 0.936 12 C 0.007 3.993 13 N -0.930 5.930 14 Si 0.963 3.037 15 H -0.277 1.277 16 H -0.283 1.283 17 H -0.262 1.262 18 C 0.142 3.858 19 C -0.013 4.013 20 C -0.207 4.207 21 C -0.221 4.221 22 C -0.042 4.042 23 O -0.193 6.193 24 S 0.057 5.943 25 H 0.045 0.955 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.162 0.838 31 H 0.141 0.859 32 H 0.095 0.905 33 H 0.028 0.972 34 H 0.024 0.976 35 H -0.037 1.037 36 H 0.264 0.736 37 H 0.102 0.898 38 H 0.040 0.960 39 H 0.140 0.860 40 H 0.170 0.830 41 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.713 2.604 12.484 16.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.092 4.092 3 C -0.293 4.293 4 C -0.173 4.173 5 C -0.154 4.154 6 C -0.288 4.288 7 C -0.004 4.004 8 N -0.252 5.252 9 C 0.080 3.920 10 C -0.560 4.560 11 H 0.082 0.918 12 C -0.191 4.191 13 N -0.570 5.570 14 Si 0.788 3.212 15 H -0.202 1.202 16 H -0.208 1.208 17 H -0.187 1.187 18 C 0.014 3.986 19 C -0.063 4.063 20 C -0.227 4.227 21 C -0.240 4.240 22 C -0.109 4.109 23 O -0.090 6.090 24 S 0.321 5.679 25 H 0.065 0.935 26 H 0.098 0.902 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.116 0.884 30 H 0.180 0.820 31 H 0.158 0.842 32 H 0.113 0.887 33 H 0.046 0.954 34 H 0.042 0.958 35 H -0.020 1.020 36 H 0.073 0.927 37 H 0.120 0.880 38 H 0.059 0.941 39 H 0.158 0.842 40 H 0.187 0.813 41 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -10.855 2.085 10.985 15.584 hybrid contribution 1.119 0.434 0.329 1.244 sum -9.737 2.518 11.313 15.137 Atomic orbital electron populations 1.21746 0.93093 1.02870 1.02093 1.20197 0.97106 0.88162 1.03720 1.24845 1.08180 1.01691 0.94634 1.20229 1.03390 0.93644 1.00058 1.20142 1.02113 0.97751 0.95404 1.24277 1.08383 0.99320 0.96866 1.20493 0.88614 0.92651 0.98592 1.62050 1.06337 1.11149 1.45648 1.19513 0.95334 0.92312 0.84847 1.21399 0.92730 1.33951 1.07938 0.91818 1.25816 1.03362 0.95159 0.94786 1.70081 1.37729 1.36584 1.12627 0.85473 0.79501 0.78849 0.77361 1.20247 1.20820 1.18651 1.20374 1.02133 0.87389 0.88695 1.22297 0.86631 0.99192 0.98142 1.21745 1.01920 1.05035 0.94041 1.22092 0.96527 1.04020 1.01385 1.24784 0.99985 1.03266 0.82862 1.83995 1.39310 1.55911 1.29824 1.84555 1.64653 1.06990 1.11655 0.93549 0.90249 0.91917 0.91352 0.88416 0.82045 0.84156 0.88740 0.95395 0.95842 1.01951 0.92748 0.87998 0.94145 0.84196 0.81268 0.74289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.89 71.98 0.71 -1.85 16 2 C -0.05 -1.18 6.43 29.85 0.19 -0.99 16 3 C -0.18 -5.26 5.76 24.59 0.14 -5.12 16 4 C -0.14 -4.16 10.05 21.22 0.21 -3.95 16 5 C -0.12 -4.11 10.05 21.22 0.21 -3.89 16 6 C -0.17 -6.45 5.47 24.59 0.13 -6.31 16 7 C 0.13 4.92 5.32 85.56 0.46 5.38 16 8 N -0.53 -23.34 4.36 -909.94 -3.96 -27.30 16 9 C 0.21 10.97 4.54 85.56 0.39 11.36 16 10 C -0.52 -29.36 8.28 25.60 0.21 -29.15 16 11 H 0.06 3.51 7.26 -2.91 -0.02 3.49 16 12 C 0.01 0.41 5.46 84.65 0.46 0.88 16 13 N -0.93 -55.87 13.29 21.45 0.28 -55.58 16 14 Si 0.96 44.32 29.54 68.60 2.03 46.34 16 15 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 16 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 17 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 18 C 0.14 5.65 5.34 85.56 0.46 6.11 16 19 C -0.01 -0.44 6.15 24.83 0.15 -0.28 16 20 C -0.21 -6.70 10.81 22.19 0.24 -6.47 16 21 C -0.22 -5.54 10.91 22.19 0.24 -5.30 16 22 C -0.04 -0.97 12.09 66.97 0.81 -0.16 16 23 O -0.19 -5.94 9.79 -2.55 -0.02 -5.97 16 24 S 0.06 2.10 22.30 -56.49 -1.26 0.84 16 25 H 0.05 0.93 8.14 -2.38 -0.02 0.92 16 26 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 28 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.16 3.62 8.06 -2.91 -0.02 3.60 16 31 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 32 H 0.09 3.38 6.47 -2.39 -0.02 3.36 16 33 H 0.03 1.13 7.99 -2.39 -0.02 1.11 16 34 H 0.02 1.35 6.52 -2.39 -0.02 1.33 16 35 H -0.04 -2.15 8.12 -2.39 -0.02 -2.17 16 36 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 37 H 0.10 4.36 6.59 -2.39 -0.02 4.34 16 38 H 0.04 1.56 8.05 -2.39 -0.02 1.54 16 39 H 0.14 4.59 8.06 -2.91 -0.02 4.57 16 40 H 0.17 3.18 8.06 -2.91 -0.02 3.16 16 41 H 0.24 3.02 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -66.83 357.45 3.10 -63.73 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 1.01 Total: 17.68 kcal Atomic # 6 Polarization: -44.76 SS G_CDS: 5.03 Total: -39.74 kcal Atomic # 7 Polarization: -79.21 SS G_CDS: -3.68 Total: -82.89 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -0.02 Total: -5.97 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -1.26 Total: 0.84 kcal Total: -66.83 3.10 -63.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535063129.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.318 kcal (2) G-P(sol) polarization free energy of solvation -66.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds