Wall clock time and date at job start Tue Mar 31 2020 08:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47411 * 2 1 4 4 N 1.46503 * 109.47029 * 120.00347 * 2 1 3 5 5 C 1.46502 * 119.99966 * 123.74340 * 4 2 1 6 6 C 1.50703 * 109.47111 * 262.86794 * 5 4 2 7 7 H 1.08002 * 119.99619 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00086 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00339 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00093 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47347 * 59.99679 * 10 8 6 12 12 H 1.48505 * 109.47454 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47179 * 299.99931 * 10 8 6 14 14 C 1.34775 * 120.00051 * 303.73817 * 4 2 1 15 15 O 1.21531 * 119.99842 * 3.15432 * 14 4 2 16 16 C 1.48043 * 119.99939 * 183.15341 * 14 4 2 17 17 C 1.39530 * 119.46907 * 172.92257 * 16 14 4 18 18 C 1.38460 * 119.39810 * 179.97438 * 17 16 14 19 19 C 1.38664 * 118.35898 * 0.02562 * 18 17 16 20 20 O 1.35046 * 134.03635 * 179.97438 * 19 18 17 21 21 C 1.34369 * 108.13265 * 180.02562 * 20 19 18 22 22 O 1.35093 * 124.89320 * 180.02562 * 21 20 19 23 23 N 1.30718 * 110.22047 * 0.02562 * 21 20 19 24 24 C 1.36024 * 108.82808 * 0.02562 * 23 21 20 25 25 N 1.32526 * 133.38542 * 180.30292 * 24 23 21 26 26 H 1.09002 * 109.47230 * 305.54451 * 1 2 3 27 27 H 1.08999 * 109.47272 * 65.54533 * 1 2 3 28 28 H 1.08998 * 109.47430 * 185.54601 * 1 2 3 29 29 H 1.09007 * 109.46780 * 239.99818 * 2 1 3 30 30 H 1.09001 * 109.47350 * 184.92324 * 3 2 1 31 31 H 1.09004 * 109.47076 * 304.92575 * 3 2 1 32 32 H 1.08995 * 109.47029 * 64.92028 * 3 2 1 33 33 H 1.09002 * 109.47000 * 22.86417 * 5 4 2 34 34 H 1.08993 * 109.47120 * 142.86866 * 5 4 2 35 35 H 0.97003 * 120.00717 * 179.97438 * 9 8 6 36 36 H 1.08001 * 120.29803 * 359.97438 * 17 16 14 37 37 H 1.07994 * 120.82266 * 180.02562 * 18 17 16 38 38 H 0.96696 * 113.99599 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.9269 -1.8322 1.0632 6 6 2.1379 -3.1139 1.1400 7 1 1.0668 -3.0813 1.2748 8 6 2.7834 -4.3279 1.0382 9 7 4.0875 -4.3675 0.8736 10 14 1.8055 -5.9166 1.1340 11 1 0.8050 -5.9491 0.0371 12 1 2.7264 -7.0737 0.9992 13 1 1.1075 -5.9900 2.4428 14 6 1.6317 -0.2759 2.4188 15 8 0.8336 0.6341 2.5276 16 6 2.1794 -0.9288 3.6294 17 6 1.8893 -0.3976 4.8866 18 6 2.4019 -1.0097 6.0178 19 6 3.1919 -2.1377 5.8557 20 8 3.8369 -2.9625 6.7086 21 6 4.4594 -3.9084 5.9851 22 8 5.2058 -4.9094 6.5008 23 7 4.2388 -3.7206 4.7105 24 6 3.4495 -2.6232 4.5586 25 7 2.9359 -2.0105 3.5017 26 1 -0.3634 0.5974 0.8362 27 1 -0.3634 0.4254 -0.9354 28 1 -0.3634 -1.0228 0.0993 29 1 1.8933 -0.5139 -0.8900 30 1 3.1265 1.4437 -0.0882 31 1 1.6065 1.9811 -0.8426 32 1 1.7505 1.9302 0.9307 33 1 3.4399 -1.7783 0.1030 34 1 3.6605 -1.8084 1.8690 35 1 4.5418 -5.2217 0.8023 36 1 1.2705 0.4830 4.9764 37 1 2.1916 -0.6184 7.0022 38 1 5.5820 -5.5022 5.8359 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597040964.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:34 Heat of formation + Delta-G solvation = 16.821614 kcal Electronic energy + Delta-G solvation = -25824.142150 eV Core-core repulsion = 22056.804572 eV Total energy + Delta-G solvation = -3767.337578 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.17805 -39.92139 -38.46150 -37.73215 -35.47090 -34.37982 -33.15522 -32.09355 -31.03263 -29.42136 -26.82889 -26.62331 -24.92280 -23.47938 -22.77700 -22.07788 -21.68569 -19.43682 -19.05967 -17.82890 -17.22869 -17.19896 -16.51990 -16.03564 -15.41770 -14.69222 -14.64138 -14.42206 -14.12111 -13.75094 -13.65468 -13.32841 -13.01227 -12.97103 -12.80824 -12.55068 -12.09206 -11.68556 -11.45883 -11.43435 -10.96333 -10.85561 -10.80613 -10.70757 -10.65303 -10.33419 -10.02115 -9.56372 -9.21540 -9.13274 -8.51155 -8.33940 -8.06538 -7.57990 -5.91241 -3.87993 0.87127 0.97975 1.61243 2.48353 3.31502 3.34959 3.35838 3.38666 3.43694 3.82049 4.28466 4.37109 4.51211 4.59959 5.01707 5.06945 5.33988 5.46827 5.48445 5.54654 5.69133 5.70114 5.83035 5.98872 6.09260 6.10325 6.22652 6.34942 6.42457 6.44737 6.73122 6.84354 6.94443 6.98465 7.53654 7.68327 7.81628 7.99386 8.21043 8.36761 8.37985 8.91713 9.10063 9.69556 11.16919 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.011837 B = 0.007198 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.969550 B = 3889.155156 C = 5628.824433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.144 3.856 3 C -0.164 4.164 4 N -0.566 5.566 5 C 0.228 3.772 6 C -0.500 4.500 7 H 0.049 0.951 8 C 0.077 3.923 9 N -0.876 5.876 10 Si 0.883 3.117 11 H -0.280 1.280 12 H -0.288 1.288 13 H -0.282 1.282 14 C 0.570 3.430 15 O -0.563 6.563 16 C 0.102 3.898 17 C -0.107 4.107 18 C -0.057 4.057 19 C -0.046 4.046 20 O -0.203 6.203 21 C 0.449 3.551 22 O -0.417 6.417 23 N -0.476 5.476 24 C 0.255 3.745 25 N -0.331 5.331 26 H 0.078 0.922 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.024 0.976 34 H 0.083 0.917 35 H 0.259 0.741 36 H 0.161 0.839 37 H 0.147 0.853 38 H 0.444 0.556 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.385 5.132 7.735 9.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.040 3.960 3 C -0.222 4.222 4 N -0.294 5.294 5 C 0.109 3.891 6 C -0.540 4.540 7 H 0.067 0.933 8 C -0.126 4.126 9 N -0.514 5.514 10 Si 0.712 3.288 11 H -0.206 1.206 12 H -0.214 1.214 13 H -0.208 1.208 14 C 0.357 3.643 15 O -0.444 6.444 16 C -0.045 4.045 17 C -0.128 4.128 18 C -0.084 4.084 19 C -0.099 4.099 20 O -0.097 6.097 21 C 0.196 3.804 22 O -0.219 6.219 23 N -0.226 5.226 24 C 0.016 3.984 25 N -0.045 5.045 26 H 0.097 0.903 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.042 0.958 34 H 0.100 0.900 35 H 0.069 0.931 36 H 0.178 0.822 37 H 0.165 0.835 38 H 0.304 0.696 Dipole moment (debyes) X Y Z Total from point charges 0.525 4.871 7.058 8.592 hybrid contribution -0.540 -1.147 1.091 1.672 sum -0.015 3.724 8.149 8.960 Atomic orbital electron populations 1.22196 0.95367 1.02703 1.02096 1.20967 0.94494 0.92388 0.88154 1.22167 1.00662 0.96687 1.02689 1.48426 1.45655 1.31651 1.03677 1.20178 0.89152 0.81043 0.98709 1.21127 0.93317 0.90439 1.49071 0.93277 1.24674 0.94570 0.98093 0.95254 1.69880 1.07285 1.25456 1.48782 0.86821 0.79939 0.83799 0.78267 1.20608 1.21364 1.20825 1.17592 0.81549 0.82388 0.82810 1.90628 1.35673 1.31569 1.86573 1.21368 0.96408 0.92460 0.94245 1.21858 0.99405 1.00981 0.90567 1.20090 0.96196 0.91630 1.00472 1.21272 1.01747 0.96530 0.90377 1.84274 1.55148 1.34335 1.35953 1.22392 0.89824 0.86389 0.81777 1.84567 1.62384 1.36713 1.38269 1.71235 1.21172 1.18436 1.11784 1.20173 0.97143 0.93158 0.87914 1.68204 1.04331 1.04383 1.27598 0.90306 0.93035 0.92503 0.89559 0.93025 0.92392 0.91174 0.95765 0.90034 0.93084 0.82182 0.83534 0.69551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 8.94 37.16 0.33 -2.54 16 2 C 0.14 2.63 3.27 -67.93 -0.22 2.41 16 3 C -0.16 -2.59 9.23 37.15 0.34 -2.24 16 4 N -0.57 -12.07 2.43 -168.50 -0.41 -12.48 16 5 C 0.23 5.60 4.76 -5.19 -0.02 5.58 16 6 C -0.50 -13.38 7.94 -34.44 -0.27 -13.66 16 7 H 0.05 1.36 7.81 -52.49 -0.41 0.95 16 8 C 0.08 2.11 5.46 -17.82 -0.10 2.01 16 9 N -0.88 -24.51 13.29 55.43 0.74 -23.78 16 10 Si 0.88 21.68 29.54 -169.99 -5.02 16.65 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 14 C 0.57 11.89 6.97 -12.24 -0.09 11.80 16 15 O -0.56 -11.58 12.61 5.34 0.07 -11.51 16 16 C 0.10 2.05 6.62 -83.03 -0.55 1.50 16 17 C -0.11 -1.69 9.61 -39.02 -0.37 -2.06 16 18 C -0.06 -0.82 10.17 -39.34 -0.40 -1.22 16 19 C -0.05 -0.80 7.44 -38.43 -0.29 -1.08 16 20 O -0.20 -3.30 10.78 -19.86 -0.21 -3.51 16 21 C 0.45 7.16 9.53 52.29 0.50 7.66 16 22 O -0.42 -4.76 13.62 -40.28 -0.55 -5.31 16 23 N -0.48 -9.52 11.37 -14.31 -0.16 -9.68 16 24 C 0.26 5.33 8.38 -157.08 -1.32 4.01 16 25 N -0.33 -7.42 4.99 -9.24 -0.05 -7.46 16 26 H 0.08 1.44 6.02 -51.93 -0.31 1.13 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.09 1.57 7.73 -51.93 -0.40 1.17 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 1.19 6.45 -51.93 -0.33 0.86 16 33 H 0.02 0.63 7.81 -51.93 -0.41 0.22 16 34 H 0.08 2.14 5.25 -52.38 -0.27 1.87 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.16 2.15 7.63 -52.49 -0.40 1.75 16 37 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.44 3.08 9.06 45.56 0.41 3.50 16 LS Contribution 324.95 15.07 4.90 4.90 Total: -1.00 -32.25 324.95 -6.53 -38.78 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -3.38 Total: 1.24 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: -2.46 Total: 12.17 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 0.12 Total: -53.40 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.70 Total: -20.34 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.25 -6.53 -38.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597040964.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.601 kcal (2) G-P(sol) polarization free energy of solvation -32.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds