Wall clock time and date at job start Tue Mar 31 2020 08:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47411 * 2 1 4 4 N 1.46503 * 109.47029 * 120.00347 * 2 1 3 5 5 C 1.46502 * 119.99966 * 123.74340 * 4 2 1 6 6 C 1.50703 * 109.47111 * 262.86794 * 5 4 2 7 7 H 1.08002 * 119.99619 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00086 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00339 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00093 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47347 * 59.99679 * 10 8 6 12 12 H 1.48505 * 109.47454 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47179 * 299.99931 * 10 8 6 14 14 C 1.34775 * 120.00051 * 303.73817 * 4 2 1 15 15 O 1.21531 * 119.99842 * 3.15432 * 14 4 2 16 16 C 1.48043 * 119.99939 * 183.15341 * 14 4 2 17 17 C 1.39530 * 119.46907 * 172.92257 * 16 14 4 18 18 C 1.38460 * 119.39810 * 179.97438 * 17 16 14 19 19 C 1.38664 * 118.35898 * 0.02562 * 18 17 16 20 20 O 1.35046 * 134.03635 * 179.97438 * 19 18 17 21 21 C 1.34369 * 108.13265 * 180.02562 * 20 19 18 22 22 O 1.35093 * 124.89320 * 180.02562 * 21 20 19 23 23 N 1.30718 * 110.22047 * 0.02562 * 21 20 19 24 24 C 1.36024 * 108.82808 * 0.02562 * 23 21 20 25 25 N 1.32526 * 133.38542 * 180.30292 * 24 23 21 26 26 H 1.09002 * 109.47230 * 305.54451 * 1 2 3 27 27 H 1.08999 * 109.47272 * 65.54533 * 1 2 3 28 28 H 1.08998 * 109.47430 * 185.54601 * 1 2 3 29 29 H 1.09007 * 109.46780 * 239.99818 * 2 1 3 30 30 H 1.09001 * 109.47350 * 184.92324 * 3 2 1 31 31 H 1.09004 * 109.47076 * 304.92575 * 3 2 1 32 32 H 1.08995 * 109.47029 * 64.92028 * 3 2 1 33 33 H 1.09002 * 109.47000 * 22.86417 * 5 4 2 34 34 H 1.08993 * 109.47120 * 142.86866 * 5 4 2 35 35 H 0.97003 * 120.00717 * 179.97438 * 9 8 6 36 36 H 1.08001 * 120.29803 * 359.97438 * 17 16 14 37 37 H 1.07994 * 120.82266 * 180.02562 * 18 17 16 38 38 H 0.96696 * 113.99599 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.9269 -1.8322 1.0632 6 6 2.1379 -3.1139 1.1400 7 1 1.0668 -3.0813 1.2748 8 6 2.7834 -4.3279 1.0382 9 7 4.0875 -4.3675 0.8736 10 14 1.8055 -5.9166 1.1340 11 1 0.8050 -5.9491 0.0371 12 1 2.7264 -7.0737 0.9992 13 1 1.1075 -5.9900 2.4428 14 6 1.6317 -0.2759 2.4188 15 8 0.8336 0.6341 2.5276 16 6 2.1794 -0.9288 3.6294 17 6 1.8893 -0.3976 4.8866 18 6 2.4019 -1.0097 6.0178 19 6 3.1919 -2.1377 5.8557 20 8 3.8369 -2.9625 6.7086 21 6 4.4594 -3.9084 5.9851 22 8 5.2058 -4.9094 6.5008 23 7 4.2388 -3.7206 4.7105 24 6 3.4495 -2.6232 4.5586 25 7 2.9359 -2.0105 3.5017 26 1 -0.3634 0.5974 0.8362 27 1 -0.3634 0.4254 -0.9354 28 1 -0.3634 -1.0228 0.0993 29 1 1.8933 -0.5139 -0.8900 30 1 3.1265 1.4437 -0.0882 31 1 1.6065 1.9811 -0.8426 32 1 1.7505 1.9302 0.9307 33 1 3.4399 -1.7783 0.1030 34 1 3.6605 -1.8084 1.8690 35 1 4.5418 -5.2217 0.8023 36 1 1.2705 0.4830 4.9764 37 1 2.1916 -0.6184 7.0022 38 1 5.5820 -5.5022 5.8359 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597040964.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:33 Heat of formation + Delta-G solvation = -7.909971 kcal Electronic energy + Delta-G solvation = -25825.214592 eV Core-core repulsion = 22056.804572 eV Total energy + Delta-G solvation = -3768.410020 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.49147 -41.43361 -39.76162 -38.93426 -37.08807 -35.72438 -34.91424 -33.71542 -32.57794 -30.80523 -28.74405 -27.97633 -26.34251 -24.81256 -24.62363 -23.42264 -23.17144 -20.82815 -20.25830 -19.23080 -18.56733 -18.51445 -18.43145 -17.72242 -16.87638 -16.35287 -16.20416 -15.91822 -15.66700 -14.94512 -14.93780 -14.66985 -14.47655 -14.39155 -14.15307 -14.13095 -13.85703 -13.33797 -13.18363 -12.79379 -12.71566 -12.67010 -12.25598 -12.13549 -12.09419 -12.02030 -11.74860 -11.53881 -10.73010 -10.62630 -10.39657 -9.74130 -9.68564 -9.27398 -7.98454 -6.01447 -0.46423 -0.33953 0.42116 1.21099 1.36891 1.37937 1.43889 1.80011 2.01060 2.31072 2.50513 2.83185 3.09407 3.27037 3.36736 3.60417 3.84860 4.09681 4.11117 4.30475 4.32431 4.43172 4.45580 4.76012 4.79085 4.80723 4.85082 5.01563 5.05614 5.17178 5.22271 5.34928 5.45175 5.59746 5.80869 5.95448 6.03281 6.33338 6.39779 6.59982 6.82549 7.02698 7.33496 7.60400 9.08789 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.011837 B = 0.007198 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.969550 B = 3889.155156 C = 5628.824433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.131 3.869 3 C -0.151 4.151 4 N -0.575 5.575 5 C 0.248 3.752 6 C -0.502 4.502 7 H 0.031 0.969 8 C 0.041 3.959 9 N -0.901 5.901 10 Si 0.930 3.070 11 H -0.276 1.276 12 H -0.280 1.280 13 H -0.291 1.291 14 C 0.566 3.434 15 O -0.563 6.563 16 C 0.078 3.922 17 C -0.098 4.098 18 C -0.027 4.027 19 C -0.045 4.045 20 O -0.195 6.195 21 C 0.471 3.529 22 O -0.398 6.398 23 N -0.527 5.527 24 C 0.223 3.777 25 N -0.380 5.380 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.032 0.968 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.002 0.998 34 H 0.069 0.931 35 H 0.258 0.742 36 H 0.189 0.811 37 H 0.201 0.799 38 H 0.462 0.538 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.294 5.987 9.577 11.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.028 3.972 3 C -0.209 4.209 4 N -0.304 5.304 5 C 0.127 3.873 6 C -0.541 4.541 7 H 0.049 0.951 8 C -0.159 4.159 9 N -0.540 5.540 10 Si 0.758 3.242 11 H -0.201 1.201 12 H -0.205 1.205 13 H -0.217 1.217 14 C 0.353 3.647 15 O -0.444 6.444 16 C -0.069 4.069 17 C -0.119 4.119 18 C -0.053 4.053 19 C -0.098 4.098 20 O -0.089 6.089 21 C 0.218 3.782 22 O -0.202 6.202 23 N -0.278 5.278 24 C -0.016 4.016 25 N -0.094 5.094 26 H 0.088 0.912 27 H 0.102 0.898 28 H 0.052 0.948 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.077 0.923 33 H 0.020 0.980 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.206 0.794 37 H 0.219 0.781 38 H 0.327 0.673 Dipole moment (debyes) X Y Z Total from point charges -0.156 5.719 8.881 10.564 hybrid contribution -0.302 -1.400 0.657 1.576 sum -0.457 4.318 9.538 10.480 Atomic orbital electron populations 1.22094 0.94458 1.01243 1.03441 1.21245 0.95251 0.93668 0.87012 1.22057 1.00672 0.94832 1.03364 1.48400 1.45636 1.31264 1.05051 1.19699 0.89192 0.81551 0.96827 1.21133 0.92397 0.91644 1.48914 0.95103 1.25171 0.95245 1.00255 0.95259 1.69967 1.08174 1.25733 1.50123 0.86084 0.78999 0.81457 0.77674 1.20109 1.20516 1.21738 1.17848 0.81397 0.82406 0.83051 1.90607 1.35566 1.31529 1.86715 1.21503 0.97144 0.92735 0.95493 1.22137 0.99120 1.01428 0.89230 1.20668 0.93044 0.89354 1.02223 1.21507 1.02010 0.97216 0.89107 1.84291 1.55075 1.34246 1.35319 1.22474 0.88491 0.86220 0.80999 1.84629 1.61241 1.35697 1.38671 1.71146 1.23091 1.19660 1.13923 1.20343 0.98095 0.94015 0.89174 1.67883 1.05977 1.05877 1.29661 0.91192 0.89773 0.94830 0.90057 0.93153 0.89340 0.92267 0.97980 0.91383 0.93245 0.79399 0.78149 0.67345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.28 8.94 71.98 0.64 -4.63 16 2 C 0.13 4.82 3.27 44.99 0.15 4.96 16 3 C -0.15 -4.62 9.23 71.98 0.66 -3.95 16 4 N -0.58 -25.21 2.43 -805.30 -1.96 -27.17 16 5 C 0.25 12.73 4.76 85.63 0.41 13.14 16 6 C -0.50 -27.87 7.94 25.60 0.20 -27.67 16 7 H 0.03 1.78 7.81 -2.91 -0.02 1.76 16 8 C 0.04 2.31 5.46 84.65 0.46 2.78 16 9 N -0.90 -51.97 13.29 21.44 0.28 -51.69 16 10 Si 0.93 45.36 29.54 68.60 2.03 47.39 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 13 H -0.29 -14.47 7.11 99.48 0.71 -13.77 16 14 C 0.57 23.80 6.97 86.85 0.61 24.40 16 15 O -0.56 -22.78 12.61 -3.81 -0.05 -22.82 16 16 C 0.08 3.11 6.62 41.94 0.28 3.38 16 17 C -0.10 -2.86 9.61 22.63 0.22 -2.65 16 18 C -0.03 -0.67 10.17 22.42 0.23 -0.44 16 19 C -0.05 -1.47 7.44 23.02 0.17 -1.30 16 20 O -0.20 -5.89 10.78 11.69 0.13 -5.76 16 21 C 0.47 14.42 9.53 130.41 1.24 15.66 16 22 O -0.40 -8.26 13.62 -61.40 -0.84 -9.10 16 23 N -0.53 -21.22 11.37 -427.50 -4.86 -26.08 16 24 C 0.22 9.36 8.38 134.44 1.13 10.49 16 25 N -0.38 -17.42 4.99 -183.14 -0.91 -18.34 16 26 H 0.07 2.51 6.02 -2.39 -0.01 2.49 16 27 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.08 3.02 7.73 -2.38 -0.02 3.01 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.06 1.94 6.45 -2.39 -0.02 1.93 16 33 H 0.00 0.12 7.81 -2.39 -0.02 0.10 16 34 H 0.07 3.77 5.25 -3.26 -0.02 3.75 16 35 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 36 H 0.19 4.38 7.63 -2.91 -0.02 4.36 16 37 H 0.20 2.83 8.06 -2.91 -0.02 2.81 16 38 H 0.46 5.63 9.06 -74.06 -0.67 4.96 16 Total: -1.00 -72.81 324.95 0.67 -72.14 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 0.45 Total: 7.24 kcal Atomic # 6 Polarization: 27.79 SS G_CDS: 6.40 Total: 34.18 kcal Atomic # 7 Polarization: -115.83 SS G_CDS: -7.44 Total: -123.27 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -0.76 Total: -37.68 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -72.81 0.67 -72.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597040964.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.229 kcal (2) G-P(sol) polarization free energy of solvation -72.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds