Wall clock time and date at job start Tue Mar 31 2020 08:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00071 * 2 1 4 4 C 1.53003 * 109.47310 * 125.00571 * 3 2 1 5 5 S 1.81394 * 109.47088 * 180.02562 * 4 3 2 6 6 C 1.81402 * 102.99805 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.47241 * 179.97438 * 6 5 4 8 8 N 1.46493 * 109.47138 * 179.97438 * 7 6 5 9 9 C 1.34776 * 119.99933 * 179.97438 * 8 7 6 10 10 O 1.21582 * 119.99748 * 0.02562 * 9 8 7 11 11 C 1.47649 * 120.00001 * 180.02562 * 9 8 7 12 12 C 1.40016 * 119.89637 * 0.24992 * 11 9 8 13 13 C 1.36306 * 120.10434 * 180.25839 * 12 11 9 14 14 C 1.40885 * 119.89590 * 359.47343 * 13 12 11 15 15 C 1.41111 * 120.10921 * 180.30311 * 14 13 12 16 16 H 1.07994 * 120.00597 * 154.53119 * 15 14 13 17 17 C 1.40227 * 119.99382 * 334.52933 * 15 14 13 18 18 N 1.30644 * 120.00033 * 343.05813 * 17 15 14 19 19 Si 1.86799 * 119.99848 * 163.06034 * 17 15 14 20 20 H 1.48501 * 109.47101 * 89.99684 * 19 17 15 21 21 H 1.48501 * 109.47179 * 209.99729 * 19 17 15 22 22 H 1.48501 * 109.46949 * 330.00066 * 19 17 15 23 23 C 1.40889 * 119.79071 * 0.27404 * 14 13 12 24 24 C 1.36316 * 119.89281 * 0.02562 * 23 14 13 25 25 H 1.07998 * 119.99804 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.00101 * 180.02562 * 1 2 3 27 27 H 1.08007 * 120.00364 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47229 * 4.99850 * 3 2 1 29 29 H 1.09002 * 109.46847 * 244.99943 * 3 2 1 30 30 H 1.09001 * 109.46840 * 59.99582 * 4 3 2 31 31 H 1.09007 * 109.46686 * 299.99984 * 4 3 2 32 32 H 1.08997 * 109.47638 * 59.99676 * 6 5 4 33 33 H 1.09003 * 109.46929 * 299.99525 * 6 5 4 34 34 H 1.08997 * 109.46964 * 59.99392 * 7 6 5 35 35 H 1.09002 * 109.46546 * 300.00117 * 7 6 5 36 36 H 0.97004 * 120.00572 * 0.02562 * 8 7 6 37 37 H 1.08002 * 119.94001 * 0.03091 * 12 11 9 38 38 H 1.08006 * 120.05292 * 179.74851 * 13 12 11 39 39 H 0.97005 * 119.99903 * 179.97438 * 18 17 15 40 40 H 1.08001 * 120.05483 * 180.02562 * 23 14 13 41 41 H 1.08000 * 119.94946 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 16 3.9416 2.9043 1.1819 6 6 5.0232 2.7510 2.6301 7 6 5.8690 4.0182 2.7714 8 7 6.7421 3.8946 3.9412 9 6 7.5825 4.8976 4.2639 10 8 7.6156 5.9052 3.5842 11 6 8.4628 4.7729 5.4426 12 6 8.4266 3.6094 6.2207 13 6 9.2336 3.4919 7.3128 14 6 10.1133 4.5388 7.6518 15 6 10.9554 4.4193 8.7778 16 1 11.8800 4.9755 8.8222 17 6 10.5915 3.5782 9.8392 18 7 9.3563 3.1684 9.9540 19 14 11.8728 3.0439 11.0890 20 1 11.9137 4.0224 12.2053 21 1 11.5182 1.7028 11.6190 22 1 13.2052 2.9818 10.4362 23 6 10.1500 5.7055 6.8628 24 6 9.3347 5.8164 5.7759 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6213 1.4026 -0.9314 30 1 3.7400 0.5065 1.0919 31 1 2.4773 1.2355 2.1130 32 1 5.6787 1.8893 2.5045 33 1 4.4154 2.6178 3.5251 34 1 5.2139 4.8802 2.8968 35 1 6.4768 4.1509 1.8763 36 1 6.7159 3.0906 4.4833 37 1 7.7554 2.8054 5.9571 38 1 9.2021 2.5957 7.9148 39 1 9.1047 2.5862 10.6880 40 1 10.8230 6.5105 7.1185 41 1 9.3618 6.7105 5.1707 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597968607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:36 Heat of formation + Delta-G solvation = -19.739406 kcal Electronic energy + Delta-G solvation = -20561.637838 eV Core-core repulsion = 17339.008070 eV Total energy + Delta-G solvation = -3222.629768 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.13167 -37.18457 -36.08663 -34.90738 -33.89118 -31.09464 -30.83638 -29.63028 -29.43206 -26.01093 -24.40570 -22.97905 -21.70678 -20.89660 -20.24392 -19.71491 -17.55520 -16.96866 -16.30269 -16.08710 -15.74243 -15.52201 -15.36939 -14.79960 -14.18339 -14.03910 -13.78566 -13.60921 -13.26933 -13.09753 -12.84551 -12.56729 -12.25347 -12.04649 -11.95966 -11.83636 -11.58031 -11.38419 -11.30982 -11.25268 -10.99868 -10.66062 -10.25072 -10.08292 -9.81085 -9.58701 -9.38110 -9.01337 -8.67776 -7.92305 -7.75016 -7.56372 -7.05596 -4.63026 1.23646 1.86910 2.20134 2.29600 2.88795 2.92717 2.98805 3.00951 3.71867 3.84247 3.87334 4.39568 4.53976 4.57699 4.60263 4.68683 4.74455 4.84693 5.12624 5.24896 5.34063 5.49341 5.53699 5.61272 5.75339 5.78797 5.99975 6.11070 6.18103 6.29615 6.30788 6.74225 6.80328 6.84450 7.01453 7.10431 7.40944 7.61681 7.75266 7.83252 8.04500 8.17614 8.37147 8.60519 8.72419 9.02711 9.86496 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.022064 B = 0.002126 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.704423 B =13168.247175 C =14308.779343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.152 4.152 3 C -0.078 4.078 4 C -0.083 4.083 5 S -0.245 6.245 6 C -0.100 4.100 7 C 0.141 3.859 8 N -0.741 5.741 9 C 0.573 3.427 10 O -0.573 6.573 11 C -0.284 4.284 12 C -0.063 4.063 13 C -0.177 4.177 14 C 0.128 3.872 15 C -0.442 4.442 16 H 0.085 0.915 17 C 0.074 3.926 18 N -0.773 5.773 19 Si 0.913 3.087 20 H -0.266 1.266 21 H -0.273 1.273 22 H -0.257 1.257 23 C -0.238 4.238 24 C -0.022 4.022 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.111 0.889 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.397 0.603 37 H 0.088 0.912 38 H 0.120 0.880 39 H 0.286 0.714 40 H 0.099 0.901 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.906 -8.880 -10.952 18.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.172 4.172 3 C -0.116 4.116 4 C -0.232 4.232 5 S -0.018 6.018 6 C -0.249 4.249 7 C 0.016 3.984 8 N -0.396 5.396 9 C 0.368 3.632 10 O -0.454 6.454 11 C -0.288 4.288 12 C -0.082 4.082 13 C -0.196 4.196 14 C 0.125 3.875 15 C -0.470 4.470 16 H 0.103 0.897 17 C -0.147 4.147 18 N -0.396 5.396 19 Si 0.737 3.263 20 H -0.191 1.191 21 H -0.198 1.198 22 H -0.181 1.181 23 C -0.257 4.257 24 C -0.041 4.041 25 H 0.116 0.884 26 H 0.117 0.883 27 H 0.129 0.871 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.233 0.767 37 H 0.106 0.894 38 H 0.138 0.862 39 H 0.098 0.902 40 H 0.117 0.883 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.126 -7.443 -11.981 18.601 hybrid contribution 0.450 -1.835 1.839 2.637 sum -11.677 -9.279 -10.142 18.036 Atomic orbital electron populations 1.23913 0.95901 1.02098 1.00621 1.22876 0.95998 0.98007 1.00303 1.20475 0.97505 0.96182 0.97471 1.23350 1.00315 0.97083 1.02443 1.86932 1.49668 1.26316 1.38918 1.23558 1.00244 1.02405 0.98702 1.20758 0.92389 0.95149 0.90074 1.45889 1.42102 1.21464 1.30138 1.18595 0.78671 0.81486 0.84476 1.90644 1.70059 1.30460 1.54256 1.18879 1.08524 0.99938 1.01508 1.20460 0.97680 0.94959 0.95137 1.20966 1.00970 1.00105 0.97588 1.17798 0.89508 0.89503 0.90680 1.19844 1.05766 1.21177 1.00201 0.89692 1.26101 0.95769 0.93796 0.99053 1.69739 1.17358 1.24227 1.28312 0.86215 0.81488 0.78729 0.79899 1.19135 1.19808 1.18111 1.20729 1.05775 0.98704 1.00518 1.20370 0.92941 0.95989 0.94780 0.88394 0.88296 0.87149 0.90428 0.89923 0.89844 0.89872 0.89358 0.89331 0.91081 0.91078 0.76739 0.89392 0.86200 0.90242 0.88316 0.88035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.10 14.32 29.02 0.42 -0.69 16 2 C -0.15 -0.95 9.52 -36.02 -0.34 -1.29 16 3 C -0.08 -0.54 5.66 -27.88 -0.16 -0.70 16 4 C -0.08 -0.65 5.92 37.16 0.22 -0.43 16 5 S -0.25 -2.59 21.74 -107.50 -2.34 -4.92 16 6 C -0.10 -1.07 6.05 37.16 0.23 -0.84 16 7 C 0.14 2.01 5.68 -4.04 -0.02 1.99 16 8 N -0.74 -12.26 5.50 -61.31 -0.34 -12.60 16 9 C 0.57 12.23 7.76 -12.42 -0.10 12.13 16 10 O -0.57 -13.81 16.32 5.29 0.09 -13.72 16 11 C -0.28 -6.46 5.89 -104.73 -0.62 -7.08 16 12 C -0.06 -1.38 9.47 -39.61 -0.38 -1.76 16 13 C -0.18 -4.29 8.63 -39.28 -0.34 -4.63 16 14 C 0.13 3.25 5.57 -106.80 -0.59 2.65 16 15 C -0.44 -10.92 9.05 -37.75 -0.34 -11.26 16 16 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 17 C 0.07 1.71 5.15 -17.31 -0.09 1.62 16 18 N -0.77 -18.35 10.95 55.56 0.61 -17.74 16 19 Si 0.91 17.10 29.59 -169.99 -5.03 12.07 16 20 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 21 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 22 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 23 C -0.24 -5.74 9.73 -39.27 -0.38 -6.12 16 24 C -0.02 -0.51 9.52 -39.61 -0.38 -0.89 16 25 H 0.10 0.54 7.84 -52.49 -0.41 0.13 16 26 H 0.10 0.48 8.06 -52.49 -0.42 0.06 16 27 H 0.11 0.60 8.06 -52.48 -0.42 0.18 16 28 H 0.08 0.56 7.79 -51.93 -0.40 0.15 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.59 8.14 -51.92 -0.42 0.16 16 31 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 0.87 8.14 -51.92 -0.42 0.45 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.40 5.72 6.47 -40.82 -0.26 5.45 16 37 H 0.09 1.60 6.37 -52.49 -0.33 1.27 16 38 H 0.12 2.93 6.18 -52.48 -0.32 2.61 16 39 H 0.29 6.10 8.29 -40.82 -0.34 5.77 16 40 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 41 H 0.10 2.32 7.63 -52.49 -0.40 1.92 16 LS Contribution 363.02 15.07 5.47 5.47 Total: -1.00 -28.30 363.02 -10.33 -38.64 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -5.92 Total: 10.09 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -2.88 Total: -17.28 kcal Atomic # 7 Polarization: -30.61 SS G_CDS: 0.27 Total: -30.34 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.09 Total: -13.72 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.07 kcal Atomic # 16 Polarization: -2.59 SS G_CDS: -2.34 Total: -4.92 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.30 -10.33 -38.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597968607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.896 kcal (2) G-P(sol) polarization free energy of solvation -28.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds