Wall clock time and date at job start Tue Mar 31 2020 08:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00071 * 2 1 4 4 C 1.53003 * 109.47310 * 125.00571 * 3 2 1 5 5 S 1.81394 * 109.47088 * 180.02562 * 4 3 2 6 6 C 1.81402 * 102.99805 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.47241 * 179.97438 * 6 5 4 8 8 N 1.46493 * 109.47138 * 179.97438 * 7 6 5 9 9 C 1.34776 * 119.99933 * 179.97438 * 8 7 6 10 10 O 1.21582 * 119.99748 * 0.02562 * 9 8 7 11 11 C 1.47649 * 120.00001 * 180.02562 * 9 8 7 12 12 C 1.40016 * 119.89637 * 0.24992 * 11 9 8 13 13 C 1.36306 * 120.10434 * 180.25839 * 12 11 9 14 14 C 1.40885 * 119.89590 * 359.47343 * 13 12 11 15 15 C 1.41111 * 120.10921 * 180.30311 * 14 13 12 16 16 H 1.07994 * 120.00597 * 154.53119 * 15 14 13 17 17 C 1.40227 * 119.99382 * 334.52933 * 15 14 13 18 18 N 1.30644 * 120.00033 * 343.05813 * 17 15 14 19 19 Si 1.86799 * 119.99848 * 163.06034 * 17 15 14 20 20 H 1.48501 * 109.47101 * 89.99684 * 19 17 15 21 21 H 1.48501 * 109.47179 * 209.99729 * 19 17 15 22 22 H 1.48501 * 109.46949 * 330.00066 * 19 17 15 23 23 C 1.40889 * 119.79071 * 0.27404 * 14 13 12 24 24 C 1.36316 * 119.89281 * 0.02562 * 23 14 13 25 25 H 1.07998 * 119.99804 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.00101 * 180.02562 * 1 2 3 27 27 H 1.08007 * 120.00364 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47229 * 4.99850 * 3 2 1 29 29 H 1.09002 * 109.46847 * 244.99943 * 3 2 1 30 30 H 1.09001 * 109.46840 * 59.99582 * 4 3 2 31 31 H 1.09007 * 109.46686 * 299.99984 * 4 3 2 32 32 H 1.08997 * 109.47638 * 59.99676 * 6 5 4 33 33 H 1.09003 * 109.46929 * 299.99525 * 6 5 4 34 34 H 1.08997 * 109.46964 * 59.99392 * 7 6 5 35 35 H 1.09002 * 109.46546 * 300.00117 * 7 6 5 36 36 H 0.97004 * 120.00572 * 0.02562 * 8 7 6 37 37 H 1.08002 * 119.94001 * 0.03091 * 12 11 9 38 38 H 1.08006 * 120.05292 * 179.74851 * 13 12 11 39 39 H 0.97005 * 119.99903 * 179.97438 * 18 17 15 40 40 H 1.08001 * 120.05483 * 180.02562 * 23 14 13 41 41 H 1.08000 * 119.94946 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 16 3.9416 2.9043 1.1819 6 6 5.0232 2.7510 2.6301 7 6 5.8690 4.0182 2.7714 8 7 6.7421 3.8946 3.9412 9 6 7.5825 4.8976 4.2639 10 8 7.6156 5.9052 3.5842 11 6 8.4628 4.7729 5.4426 12 6 8.4266 3.6094 6.2207 13 6 9.2336 3.4919 7.3128 14 6 10.1133 4.5388 7.6518 15 6 10.9554 4.4193 8.7778 16 1 11.8800 4.9755 8.8222 17 6 10.5915 3.5782 9.8392 18 7 9.3563 3.1684 9.9540 19 14 11.8728 3.0439 11.0890 20 1 11.9137 4.0224 12.2053 21 1 11.5182 1.7028 11.6190 22 1 13.2052 2.9818 10.4362 23 6 10.1500 5.7055 6.8628 24 6 9.3347 5.8164 5.7759 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6213 1.4026 -0.9314 30 1 3.7400 0.5065 1.0919 31 1 2.4773 1.2355 2.1130 32 1 5.6787 1.8893 2.5045 33 1 4.4154 2.6178 3.5251 34 1 5.2139 4.8802 2.8968 35 1 6.4768 4.1509 1.8763 36 1 6.7159 3.0906 4.4833 37 1 7.7554 2.8054 5.9571 38 1 9.2021 2.5957 7.9148 39 1 9.1047 2.5862 10.6880 40 1 10.8230 6.5105 7.1185 41 1 9.3618 6.7105 5.1707 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597968607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:35 Heat of formation + Delta-G solvation = -33.454482 kcal Electronic energy + Delta-G solvation = -20562.232569 eV Core-core repulsion = 17339.008070 eV Total energy + Delta-G solvation = -3223.224498 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.80847 -38.95216 -36.59841 -36.34003 -35.67293 -32.62841 -31.39255 -31.33109 -31.03593 -27.73256 -25.25448 -24.13427 -23.24535 -22.67113 -21.37873 -20.70482 -19.37108 -18.53850 -17.50580 -17.05568 -16.86597 -16.80292 -16.42293 -15.75578 -15.66877 -15.48486 -15.11925 -15.01413 -14.57135 -14.35686 -13.93547 -13.77447 -13.69521 -13.32680 -13.25480 -13.13588 -12.85747 -12.83618 -12.62506 -12.36712 -12.17058 -11.85502 -11.78175 -11.37911 -11.12707 -11.01152 -10.74809 -10.27453 -10.15994 -9.58048 -9.40977 -8.79391 -8.74155 -6.48978 0.42422 0.44708 1.14663 1.37565 1.38901 1.42524 1.54681 1.57049 2.10246 2.17941 2.47681 2.77750 3.61314 3.68009 3.84666 3.86950 4.02424 4.14243 4.24934 4.30899 4.34282 4.39275 4.44170 4.56727 4.66497 4.81290 4.81592 4.92112 5.02033 5.02936 5.10760 5.14947 5.29263 5.45123 5.58594 5.73603 5.81008 5.85583 5.93071 5.98836 6.22392 6.53350 6.65347 6.76719 6.88197 7.39058 8.15900 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.022064 B = 0.002126 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.704423 B =13168.247175 C =14308.779343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.159 4.159 3 C -0.076 4.076 4 C -0.070 4.070 5 S -0.284 6.284 6 C -0.087 4.087 7 C 0.143 3.857 8 N -0.722 5.722 9 C 0.573 3.427 10 O -0.605 6.605 11 C -0.293 4.293 12 C -0.053 4.053 13 C -0.196 4.196 14 C 0.101 3.899 15 C -0.473 4.473 16 H 0.085 0.915 17 C 0.038 3.962 18 N -0.798 5.798 19 Si 0.987 3.013 20 H -0.262 1.262 21 H -0.261 1.261 22 H -0.258 1.258 23 C -0.252 4.252 24 C -0.033 4.033 25 H 0.098 0.902 26 H 0.110 0.890 27 H 0.120 0.880 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.411 0.589 37 H 0.127 0.873 38 H 0.115 0.885 39 H 0.297 0.703 40 H 0.104 0.896 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.725 -11.059 -10.653 19.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.178 4.178 3 C -0.114 4.114 4 C -0.218 4.218 5 S -0.057 6.057 6 C -0.235 4.235 7 C 0.019 3.981 8 N -0.376 5.376 9 C 0.366 3.634 10 O -0.490 6.490 11 C -0.298 4.298 12 C -0.071 4.071 13 C -0.216 4.216 14 C 0.097 3.903 15 C -0.500 4.500 16 H 0.103 0.897 17 C -0.181 4.181 18 N -0.422 5.422 19 Si 0.807 3.193 20 H -0.186 1.186 21 H -0.185 1.185 22 H -0.181 1.181 23 C -0.272 4.272 24 C -0.053 4.053 25 H 0.116 0.884 26 H 0.128 0.872 27 H 0.138 0.862 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.248 0.752 37 H 0.144 0.856 38 H 0.133 0.867 39 H 0.108 0.892 40 H 0.122 0.878 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.979 -9.653 -11.694 19.960 hybrid contribution 0.586 -1.153 1.656 2.101 sum -12.393 -10.806 -10.038 19.264 Atomic orbital electron populations 1.24075 0.95963 1.02710 0.99895 1.22906 0.96140 0.97867 1.00922 1.20448 0.97284 0.96582 0.97100 1.23391 1.00178 0.95176 1.03034 1.87124 1.50385 1.29153 1.39032 1.23399 1.00096 1.00722 0.99299 1.20805 0.91999 0.96891 0.88455 1.45680 1.40788 1.20566 1.30525 1.18424 0.79136 0.81967 0.83868 1.90627 1.71202 1.32012 1.55150 1.19151 1.08515 0.99950 1.02187 1.20733 0.97173 0.95483 0.93759 1.21013 1.02040 0.99854 0.98655 1.18162 0.90437 0.90209 0.91461 1.20113 1.06075 1.22769 1.01084 0.89681 1.26916 0.97670 0.93072 1.00453 1.69754 1.18830 1.24304 1.29312 0.85118 0.78434 0.78663 0.77109 1.18624 1.18544 1.18129 1.20861 1.06408 0.98935 1.00956 1.20519 0.93363 0.96590 0.94802 0.88396 0.87192 0.86173 0.90959 0.90158 0.88660 0.89229 0.87729 0.87969 0.92253 0.92040 0.75192 0.85556 0.86706 0.89159 0.87794 0.87989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.88 14.32 67.79 0.97 -0.91 16 2 C -0.16 -1.66 9.52 25.65 0.24 -1.42 16 3 C -0.08 -0.93 5.66 29.85 0.17 -0.76 16 4 C -0.07 -0.92 5.92 71.98 0.43 -0.50 16 5 S -0.28 -5.57 21.74 -56.49 -1.23 -6.80 16 6 C -0.09 -1.65 6.05 71.98 0.44 -1.21 16 7 C 0.14 3.89 5.68 86.38 0.49 4.38 16 8 N -0.72 -22.66 5.50 -466.16 -2.57 -25.22 16 9 C 0.57 24.10 7.76 86.73 0.67 24.77 16 10 O -0.61 -29.36 16.32 -3.97 -0.06 -29.42 16 11 C -0.29 -13.30 5.89 -19.93 -0.12 -13.42 16 12 C -0.05 -2.25 9.47 22.25 0.21 -2.04 16 13 C -0.20 -9.53 8.63 22.47 0.19 -9.34 16 14 C 0.10 5.19 5.57 -21.28 -0.12 5.07 16 15 C -0.47 -23.71 9.05 23.46 0.21 -23.50 16 16 H 0.09 4.09 7.90 -2.91 -0.02 4.07 16 17 C 0.04 1.74 5.15 85.35 0.44 2.18 16 18 N -0.80 -37.61 10.95 21.87 0.24 -37.37 16 19 Si 0.99 34.32 29.59 68.60 2.03 36.35 16 20 H -0.26 -8.85 7.11 99.48 0.71 -8.15 16 21 H -0.26 -8.52 7.11 99.48 0.71 -7.81 16 22 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 23 C -0.25 -12.50 9.73 22.47 0.22 -12.28 16 24 C -0.03 -1.61 9.52 22.25 0.21 -1.40 16 25 H 0.10 0.95 7.84 -2.91 -0.02 0.93 16 26 H 0.11 0.83 8.06 -2.91 -0.02 0.81 16 27 H 0.12 1.02 8.06 -2.91 -0.02 1.00 16 28 H 0.07 0.96 7.79 -2.39 -0.02 0.94 16 29 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.06 1.82 8.14 -2.39 -0.02 1.81 16 36 H 0.41 10.66 6.47 -92.71 -0.60 10.06 16 37 H 0.13 4.28 6.37 -2.91 -0.02 4.26 16 38 H 0.12 5.62 6.18 -2.91 -0.02 5.61 16 39 H 0.30 12.39 8.29 -92.70 -0.77 11.62 16 40 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 41 H 0.10 4.80 7.63 -2.91 -0.02 4.77 16 Total: -1.00 -61.54 363.02 3.49 -58.05 By element: Atomic # 1 Polarization: 34.36 SS G_CDS: 0.42 Total: 34.78 kcal Atomic # 6 Polarization: -35.03 SS G_CDS: 4.66 Total: -30.36 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: -2.33 Total: -62.59 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.06 Total: -29.42 kcal Atomic # 14 Polarization: 34.32 SS G_CDS: 2.03 Total: 36.35 kcal Atomic # 16 Polarization: -5.57 SS G_CDS: -1.23 Total: -6.80 kcal Total: -61.54 3.49 -58.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597968607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.591 kcal (2) G-P(sol) polarization free energy of solvation -61.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds