Wall clock time and date at job start Tue Mar 31 2020 08:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47420 * 2 1 4 4 H 1.09003 * 109.58192 * 55.27206 * 3 2 1 5 5 C 1.53755 * 109.62494 * 175.71557 * 3 2 1 6 6 N 1.46380 * 109.20611 * 177.62289 * 5 3 2 7 7 C 1.34775 * 119.64667 * 114.91218 * 6 5 3 8 8 O 1.21611 * 119.99946 * 355.88782 * 7 6 5 9 9 C 1.47430 * 120.00005 * 175.89128 * 7 6 5 10 10 C 1.39228 * 120.28522 * 55.44169 * 9 7 6 11 11 C 1.38216 * 120.09539 * 179.97438 * 10 9 7 12 12 C 1.38822 * 120.67556 * 0.02562 * 11 10 9 13 13 C 1.37596 * 120.57125 * 359.97438 * 12 11 10 14 14 C 1.40704 * 119.88094 * 359.97438 * 13 12 11 15 15 C 1.40893 * 120.32920 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00483 * 214.59068 * 15 14 13 17 17 C 1.40277 * 119.99351 * 34.59482 * 15 14 13 18 18 N 1.30625 * 120.00364 * 5.33141 * 17 15 14 19 19 Si 1.86809 * 119.99564 * 185.33155 * 17 15 14 20 20 H 1.48500 * 109.46708 * 89.99800 * 19 17 15 21 21 H 1.48494 * 109.46853 * 209.99977 * 19 17 15 22 22 H 1.48504 * 109.47124 * 330.00021 * 19 17 15 23 23 C 1.46383 * 120.70522 * 294.63724 * 6 5 3 24 24 C 1.53241 * 109.48823 * 65.36201 * 23 6 5 25 25 S 1.81743 * 109.58081 * 294.99984 * 3 2 1 26 26 H 1.09002 * 109.46946 * 59.99978 * 1 2 3 27 27 H 1.08995 * 109.47250 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46956 * 300.00640 * 1 2 3 29 29 H 1.09002 * 109.46956 * 239.99360 * 2 1 3 30 30 H 1.09002 * 109.46946 * 120.00022 * 2 1 3 31 31 H 1.09001 * 109.60747 * 57.70165 * 5 3 2 32 32 H 1.09002 * 109.60711 * 297.53935 * 5 3 2 33 33 H 1.08003 * 119.95303 * 359.95826 * 10 9 7 34 34 H 1.08000 * 119.66501 * 180.02562 * 11 10 9 35 35 H 1.08005 * 119.71569 * 179.69892 * 12 11 10 36 36 H 1.07994 * 120.06101 * 179.97438 * 13 12 11 37 37 H 0.96998 * 120.00006 * 180.02562 * 18 17 15 38 38 H 1.08997 * 109.46420 * 185.36649 * 23 6 5 39 39 H 1.09003 * 109.46500 * 305.35681 * 23 6 5 40 40 H 1.08998 * 109.58371 * 62.13628 * 24 23 6 41 41 H 1.09000 * 109.58357 * 182.41126 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6103 1.9819 0.8440 5 6 3.5738 1.4478 0.1082 6 7 4.0558 2.8288 0.0503 7 6 4.6651 3.3679 1.1248 8 8 4.7455 2.7343 2.1597 9 6 5.2340 4.7257 1.0456 10 6 4.4368 5.7995 0.6584 11 6 4.9740 7.0709 0.5860 12 6 6.3086 7.2945 0.8959 13 6 7.1214 6.2535 1.2817 14 6 6.5989 4.9497 1.3645 15 6 7.4228 3.8766 1.7579 16 1 7.2756 2.8968 1.3281 17 6 8.4344 4.0810 2.7080 18 7 8.5462 5.2377 3.3046 19 14 9.6216 2.6988 3.1201 20 1 10.7983 2.7714 2.2171 21 1 10.0699 2.8351 4.5292 22 1 8.9404 1.3914 2.9415 23 6 3.8885 3.6285 -1.1643 24 6 2.3961 3.8666 -1.4181 25 16 1.5609 2.2579 -1.5519 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 4.0008 0.8790 -0.7178 32 1 3.8754 0.9972 1.0538 33 1 3.3971 5.6387 0.4140 34 1 4.3492 7.8989 0.2852 35 1 6.7136 8.2936 0.8294 36 1 8.1586 6.4367 1.5205 37 1 9.2459 5.3790 3.9613 38 1 4.3933 4.5866 -1.0408 39 1 4.3208 3.0967 -2.0119 40 1 1.9701 4.4315 -0.5890 41 1 2.2677 4.4254 -2.3451 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601259719.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:28 Heat of formation + Delta-G solvation = -36.261487 kcal Electronic energy + Delta-G solvation = -23178.019354 eV Core-core repulsion = 19954.673135 eV Total energy + Delta-G solvation = -3223.346219 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.25220 -38.90985 -37.52289 -35.95293 -35.48560 -32.17380 -31.85306 -31.39331 -29.82428 -27.36016 -25.25231 -24.64372 -23.14160 -22.73625 -22.42445 -20.37825 -19.18674 -18.43334 -17.58805 -17.16586 -16.97960 -16.39894 -16.24398 -15.95674 -15.52339 -15.15316 -14.92093 -14.50425 -14.43242 -14.27270 -14.05605 -13.79228 -13.61823 -13.47369 -13.06402 -12.96437 -12.88743 -12.72004 -12.51053 -12.30770 -12.23610 -12.01928 -11.84858 -11.72670 -11.52824 -11.15613 -10.76613 -10.59764 -9.88314 -9.36373 -9.29991 -8.66967 -8.64326 -6.45540 0.61993 0.71456 0.97671 1.30709 1.41668 1.46133 1.48773 1.88537 2.09908 2.16762 2.71574 3.52767 3.57591 3.71319 3.88084 3.90344 4.04946 4.13354 4.29209 4.33886 4.39453 4.53239 4.55013 4.63815 4.70461 4.71871 4.83748 4.84951 4.89365 5.05701 5.06927 5.17219 5.18483 5.31574 5.37601 5.52208 5.60321 5.80972 5.95852 6.06276 6.22867 6.38387 6.60014 6.83727 6.90209 7.33848 8.29655 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.016746 B = 0.004900 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.661384 B = 5712.941948 C = 6992.284838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 C -0.057 4.057 4 H 0.072 0.928 5 C 0.113 3.887 6 N -0.618 5.618 7 C 0.581 3.419 8 O -0.582 6.582 9 C -0.261 4.261 10 C -0.063 4.063 11 C -0.223 4.223 12 C -0.094 4.094 13 C -0.171 4.171 14 C 0.117 3.883 15 C -0.477 4.477 16 H 0.055 0.945 17 C 0.037 3.963 18 N -0.826 5.826 19 Si 0.976 3.024 20 H -0.251 1.251 21 H -0.264 1.264 22 H -0.274 1.274 23 C 0.099 3.901 24 C -0.095 4.095 25 S -0.249 6.249 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.050 0.950 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.122 0.878 34 H 0.134 0.866 35 H 0.121 0.879 36 H 0.104 0.896 37 H 0.289 0.711 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.508 -4.236 -9.775 14.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.138 4.138 3 C -0.187 4.187 4 H 0.090 0.910 5 C -0.011 4.011 6 N -0.351 5.351 7 C 0.373 3.627 8 O -0.462 6.462 9 C -0.266 4.266 10 C -0.082 4.082 11 C -0.242 4.242 12 C -0.113 4.113 13 C -0.191 4.191 14 C 0.114 3.886 15 C -0.506 4.506 16 H 0.073 0.927 17 C -0.178 4.178 18 N -0.453 5.453 19 Si 0.798 3.202 20 H -0.175 1.175 21 H -0.189 1.189 22 H -0.198 1.198 23 C -0.025 4.025 24 C -0.244 4.244 25 S -0.022 6.022 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.140 0.860 34 H 0.152 0.848 35 H 0.139 0.861 36 H 0.122 0.878 37 H 0.100 0.900 38 H 0.123 0.877 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.990 -4.828 -9.898 15.558 hybrid contribution 1.481 0.042 1.660 2.225 sum -9.509 -4.785 -8.238 13.460 Atomic orbital electron populations 1.21761 0.94034 1.02626 1.02084 1.21359 0.97381 0.91379 1.03717 1.23709 0.97141 1.01024 0.96835 0.90988 1.21835 0.92569 0.82853 1.03855 1.47981 1.59201 1.13837 1.14074 1.18665 0.75188 0.86562 0.82289 1.90642 1.59633 1.64217 1.31658 1.19740 0.95149 0.92622 1.19065 1.20896 0.97889 0.92261 0.97116 1.20789 0.95754 0.96470 1.11180 1.21183 0.94497 0.98042 0.97557 1.21331 0.99753 0.93101 1.04883 1.17699 0.90023 0.93716 0.87180 1.19515 1.13760 0.95887 1.21478 0.92678 1.26625 0.97941 0.99006 0.94182 1.69700 1.29909 1.24919 1.20768 0.85290 0.78137 0.78027 0.78794 1.17466 1.18859 1.19848 1.22048 0.95741 0.98146 0.86553 1.23918 0.96476 0.96587 1.07432 1.86551 1.68753 1.17972 1.28916 0.92191 0.90857 0.93057 0.89958 0.90061 0.89016 0.90301 0.86019 0.84801 0.86058 0.87755 0.90029 0.87693 0.89299 0.90081 0.83954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.74 71.98 0.70 -1.90 16 2 C -0.10 -1.98 5.42 30.59 0.17 -1.81 16 3 C -0.06 -1.45 2.77 30.85 0.09 -1.37 16 4 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 5 C 0.11 3.48 5.55 86.66 0.48 3.97 16 6 N -0.62 -22.06 2.78 -824.33 -2.29 -24.35 16 7 C 0.58 27.13 6.33 86.66 0.55 27.67 16 8 O -0.58 -31.98 15.69 -4.07 -0.06 -32.04 16 9 C -0.26 -12.50 4.85 -19.70 -0.10 -12.59 16 10 C -0.06 -2.49 7.40 22.50 0.17 -2.33 16 11 C -0.22 -8.39 10.03 22.40 0.22 -8.16 16 12 C -0.09 -3.95 10.01 22.26 0.22 -3.73 16 13 C -0.17 -8.62 8.62 22.72 0.20 -8.42 16 14 C 0.12 6.29 5.52 -21.11 -0.12 6.18 16 15 C -0.48 -26.91 7.88 23.42 0.18 -26.72 16 16 H 0.05 3.20 7.43 -2.91 -0.02 3.18 16 17 C 0.04 1.95 5.32 85.37 0.45 2.41 16 18 N -0.83 -44.21 10.97 21.88 0.24 -43.97 16 19 Si 0.98 41.12 29.57 68.60 2.03 43.15 16 20 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 21 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 C 0.10 2.79 5.49 86.48 0.48 3.26 16 24 C -0.10 -2.14 6.47 72.06 0.47 -1.67 16 25 S -0.25 -5.76 20.48 -56.49 -1.16 -6.92 16 26 H 0.06 1.11 7.14 -2.39 -0.02 1.09 16 27 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.08 2.81 6.90 -2.39 -0.02 2.79 16 33 H 0.12 4.03 6.37 -2.91 -0.02 4.01 16 34 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 35 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 36 H 0.10 5.52 6.48 -2.91 -0.02 5.51 16 37 H 0.29 13.99 8.29 -92.71 -0.77 13.22 16 38 H 0.11 3.24 4.58 -2.39 -0.01 3.23 16 39 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.08 1.93 7.24 -2.39 -0.02 1.91 16 41 H 0.14 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -66.05 337.90 3.94 -62.11 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: 1.03 Total: 27.24 kcal Atomic # 6 Polarization: -29.38 SS G_CDS: 4.16 Total: -25.22 kcal Atomic # 7 Polarization: -66.27 SS G_CDS: -2.05 Total: -68.32 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.06 Total: -32.04 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Atomic # 16 Polarization: -5.76 SS G_CDS: -1.16 Total: -6.92 kcal Total: -66.05 3.94 -62.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601259719.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.848 kcal (2) G-P(sol) polarization free energy of solvation -66.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds