Wall clock time and date at job start Tue Mar 31 2020 08:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 110.30444 * 2 1 4 4 N 1.46492 * 109.47376 * 65.71841 * 3 2 1 5 5 C 1.34776 * 120.00501 * 180.02562 * 4 3 2 6 6 O 1.21613 * 119.99943 * 359.97438 * 5 4 3 7 7 C 1.47433 * 120.00750 * 179.97438 * 5 4 3 8 8 C 1.39228 * 120.27500 * 355.60453 * 7 5 4 9 9 C 1.38226 * 120.09009 * 179.97438 * 8 7 5 10 10 C 1.38833 * 120.67127 * 359.97438 * 9 8 7 11 11 C 1.37600 * 120.57301 * 359.97438 * 10 9 8 12 12 C 1.40704 * 119.87952 * 0.02562 * 11 10 9 13 13 C 1.40888 * 120.32328 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00158 * 215.51754 * 13 12 11 15 15 C 1.40272 * 120.00441 * 35.51760 * 13 12 11 16 16 N 1.30632 * 119.99352 * 9.12145 * 15 13 12 17 17 Si 1.86801 * 120.00540 * 189.12029 * 15 13 12 18 18 H 1.48503 * 109.46661 * 60.00060 * 17 15 13 19 19 H 1.48495 * 109.47248 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.46920 * 300.00355 * 17 15 13 21 21 C 1.53712 * 110.43058 * 237.76744 * 2 1 3 22 22 C 1.52940 * 112.48734 * 238.26018 * 21 2 1 23 23 C 1.55149 * 108.96479 * 30.09809 * 22 21 2 24 24 S 1.83401 * 110.34066 * 122.16916 * 2 1 3 25 25 H 1.09000 * 109.47358 * 60.70276 * 1 2 3 26 26 H 1.08994 * 109.47326 * 180.70160 * 1 2 3 27 27 H 1.09000 * 109.47464 * 300.70483 * 1 2 3 28 28 H 1.08998 * 109.47245 * 305.71148 * 3 2 1 29 29 H 1.09002 * 109.46964 * 185.71562 * 3 2 1 30 30 H 0.97003 * 120.00481 * 0.02562 * 4 3 2 31 31 H 1.07991 * 119.95963 * 359.95299 * 8 7 5 32 32 H 1.07991 * 119.66597 * 180.02562 * 9 8 7 33 33 H 1.08000 * 119.71216 * 179.72648 * 10 9 8 34 34 H 1.07997 * 120.05712 * 179.97438 * 11 10 9 35 35 H 0.97003 * 119.99625 * 180.02562 * 16 15 13 36 36 H 1.08996 * 108.88511 * 359.05082 * 21 2 1 37 37 H 1.09000 * 108.88445 * 117.46553 * 21 2 1 38 38 H 1.09002 * 109.60304 * 270.16719 * 22 21 2 39 39 H 1.09001 * 109.45141 * 149.94442 * 22 21 2 40 40 H 1.09009 * 111.13137 * 200.64883 * 23 22 21 41 41 H 1.09000 * 111.13231 * 76.47319 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0608 1.4349 0.0000 4 7 1.6977 2.0900 1.2589 5 6 2.0620 3.3681 1.4833 6 8 2.6927 3.9774 0.6407 7 6 1.6960 4.0276 2.7500 8 6 0.8969 3.3676 3.6797 9 6 0.5565 3.9894 4.8664 10 6 1.0043 5.2732 5.1471 11 6 1.7963 5.9503 4.2484 12 6 2.1571 5.3398 3.0331 13 6 2.9681 6.0243 2.1065 14 1 2.8050 5.8945 1.0468 15 6 3.9874 6.8745 2.5601 16 7 4.3033 6.8970 3.8275 17 14 4.8932 7.9744 1.3521 18 1 3.9262 8.8915 0.6969 19 1 5.9164 8.7693 2.0775 20 1 5.5570 7.1365 0.3215 21 6 2.0665 -0.7683 -1.2184 22 6 2.9673 -1.9388 -0.8217 23 6 2.5078 -2.4841 0.5562 24 16 2.1674 -0.9156 1.4556 25 1 -0.3634 0.5029 -0.8962 26 1 -0.3634 -1.0275 0.0126 27 1 -0.3634 0.5247 0.8836 28 1 1.6244 1.9838 -0.8344 29 1 3.1459 1.4208 -0.1023 30 1 1.1949 1.6040 1.9312 31 1 0.5421 2.3688 3.4733 32 1 -0.0634 3.4710 5.5828 33 1 0.7254 5.7460 6.0772 34 1 2.1397 6.9488 4.4752 35 1 5.0080 7.4852 4.1413 36 1 1.2234 -1.1510 -1.7935 37 1 2.6354 -0.0820 -1.8457 38 1 4.0006 -1.5985 -0.7541 39 1 2.8900 -2.7265 -1.5711 40 1 3.3040 -3.0499 1.0403 41 1 1.6040 -3.0856 0.4593 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601310878.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:02 Heat of formation + Delta-G solvation = -27.260999 kcal Electronic energy + Delta-G solvation = -22611.182835 eV Core-core repulsion = 19388.226907 eV Total energy + Delta-G solvation = -3222.955929 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.05239 -37.55068 -36.50497 -34.21819 -33.55490 -31.58855 -29.90235 -29.43131 -27.27295 -26.19164 -25.10933 -22.79436 -21.76844 -20.76796 -20.43387 -19.16729 -17.57062 -16.70818 -16.01412 -15.87156 -15.21528 -14.81229 -14.63882 -14.42604 -14.16111 -13.85530 -13.54035 -13.20943 -13.07123 -12.78237 -12.72399 -12.65264 -12.11403 -11.78372 -11.66645 -11.45142 -11.24135 -11.13927 -11.07810 -10.97311 -10.83189 -10.63114 -10.46073 -10.07295 -9.85181 -9.63021 -9.21025 -8.34969 -8.29848 -7.72925 -7.53784 -7.28855 -6.75012 -4.34493 1.69517 2.22783 2.41209 2.86979 3.12235 3.18409 3.28656 3.93445 4.01799 4.22060 4.33825 4.42808 4.60438 4.73755 4.76293 4.90897 4.98698 5.27197 5.35705 5.49117 5.60383 5.63598 5.66130 5.73359 5.80233 5.86883 5.96109 6.04148 6.07121 6.24014 6.34519 6.65943 6.99571 7.11387 7.19978 7.28491 7.50912 7.67292 7.92875 8.03736 8.22871 8.42217 8.72459 8.87836 8.95549 9.46486 10.21109 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.017161 B = 0.004166 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.182219 B = 6720.256657 C = 7728.617669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.024 4.024 3 C 0.149 3.851 4 N -0.744 5.744 5 C 0.566 3.434 6 O -0.540 6.540 7 C -0.260 4.260 8 C -0.056 4.056 9 C -0.244 4.244 10 C -0.096 4.096 11 C -0.147 4.147 12 C 0.148 3.852 13 C -0.423 4.423 14 H 0.109 0.891 15 C 0.069 3.931 16 N -0.795 5.795 17 Si 0.917 3.083 18 H -0.263 1.263 19 H -0.280 1.280 20 H -0.263 1.263 21 C -0.122 4.122 22 C -0.123 4.123 23 C -0.076 4.076 24 S -0.272 6.272 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.393 0.607 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.115 0.885 35 H 0.282 0.718 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.368 -14.635 -7.201 16.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 C 0.023 3.977 4 N -0.400 5.400 5 C 0.361 3.639 6 O -0.419 6.419 7 C -0.264 4.264 8 C -0.075 4.075 9 C -0.263 4.263 10 C -0.115 4.115 11 C -0.166 4.166 12 C 0.144 3.856 13 C -0.451 4.451 14 H 0.127 0.873 15 C -0.149 4.149 16 N -0.420 5.420 17 Si 0.741 3.259 18 H -0.188 1.188 19 H -0.205 1.205 20 H -0.187 1.187 21 C -0.161 4.161 22 C -0.162 4.162 23 C -0.225 4.225 24 S -0.044 6.044 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.228 0.772 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.133 0.867 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.122 0.878 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.569 -13.760 -6.484 15.625 hybrid contribution 0.116 -0.267 -1.060 1.100 sum -3.453 -14.027 -7.545 16.298 Atomic orbital electron populations 1.22029 0.91627 1.02361 1.03064 1.23553 0.98753 0.97337 0.93787 1.21136 1.00125 0.88029 0.88383 1.45996 1.60727 1.14308 1.18926 1.18388 0.78304 0.79781 0.87453 1.90645 1.40380 1.63910 1.46989 1.19453 1.13613 0.96718 0.96661 1.20650 0.96379 0.96586 0.93888 1.20282 1.09838 0.97544 0.98677 1.20796 0.98051 0.94842 0.97780 1.21329 0.99504 1.00138 0.95656 1.17467 0.88286 0.88389 0.91479 1.20252 1.10451 1.17645 0.96755 0.87293 1.26136 0.97435 0.95667 0.95635 1.69719 1.25160 1.31585 1.15524 0.86217 0.79064 0.79717 0.80890 1.18775 1.20526 1.18695 1.22096 1.00179 0.96960 0.96866 1.22366 1.00866 0.97304 0.95677 1.24329 1.04234 0.96881 0.97030 1.88205 1.85017 1.12484 1.18714 0.91490 0.91972 0.91354 0.91161 0.91234 0.77167 0.89390 0.89106 0.89100 0.86665 0.90739 0.90635 0.89786 0.90277 0.90292 0.87818 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 8.26 37.15 0.31 -1.06 16 2 C -0.02 -0.28 0.84 -90.25 -0.08 -0.36 16 3 C 0.15 2.30 4.39 -4.05 -0.02 2.29 16 4 N -0.74 -13.86 4.97 -61.39 -0.30 -14.16 16 5 C 0.57 13.50 7.72 -12.52 -0.10 13.40 16 6 O -0.54 -14.42 13.53 5.27 0.07 -14.35 16 7 C -0.26 -6.54 5.92 -104.37 -0.62 -7.16 16 8 C -0.06 -1.25 9.52 -39.22 -0.37 -1.62 16 9 C -0.24 -5.36 10.03 -39.37 -0.39 -5.75 16 10 C -0.10 -2.21 10.01 -39.59 -0.40 -2.61 16 11 C -0.15 -3.81 8.61 -38.88 -0.33 -4.15 16 12 C 0.15 4.06 5.49 -106.55 -0.58 3.47 16 13 C -0.42 -11.84 7.77 -37.82 -0.29 -12.13 16 14 H 0.11 3.15 5.74 -52.49 -0.30 2.85 16 15 C 0.07 1.82 5.25 -17.30 -0.09 1.73 16 16 N -0.79 -21.01 11.24 55.56 0.62 -20.39 16 17 Si 0.92 19.99 29.57 -169.99 -5.03 14.96 16 18 H -0.26 -5.61 7.11 56.52 0.40 -5.20 16 19 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 20 H -0.26 -5.85 7.11 56.52 0.40 -5.45 16 21 C -0.12 -1.09 5.74 -26.39 -0.15 -1.24 16 22 C -0.12 -0.98 6.34 -25.62 -0.16 -1.15 16 23 C -0.08 -0.67 7.52 38.29 0.29 -0.38 16 24 S -0.27 -3.53 21.15 -107.50 -2.27 -5.80 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.80 7.28 -51.93 -0.38 0.42 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.39 6.80 5.15 -40.82 -0.21 6.59 16 31 H 0.09 1.68 6.42 -52.49 -0.34 1.34 16 32 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 34 H 0.12 3.03 6.70 -52.49 -0.35 2.68 16 35 H 0.28 6.80 8.29 -40.82 -0.34 6.46 16 36 H 0.07 0.56 7.62 -51.93 -0.40 0.16 16 37 H 0.08 0.75 7.62 -51.93 -0.40 0.36 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.10 0.82 8.14 -51.92 -0.42 0.40 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 341.29 15.07 5.14 5.14 Total: -1.00 -30.62 341.29 -10.50 -41.12 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -5.73 Total: 10.21 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -3.00 Total: -16.73 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.32 Total: -34.55 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: 0.07 Total: -14.35 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.03 Total: 14.96 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -2.27 Total: -5.80 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.62 -10.50 -41.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601310878.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.859 kcal (2) G-P(sol) polarization free energy of solvation -30.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds