Wall clock time and date at job start Tue Mar 31 2020 08:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 110.30444 * 2 1 4 4 N 1.46492 * 109.47376 * 65.71841 * 3 2 1 5 5 C 1.34776 * 120.00501 * 180.02562 * 4 3 2 6 6 O 1.21613 * 119.99943 * 359.97438 * 5 4 3 7 7 C 1.47433 * 120.00750 * 179.97438 * 5 4 3 8 8 C 1.39228 * 120.27500 * 355.60453 * 7 5 4 9 9 C 1.38226 * 120.09009 * 179.97438 * 8 7 5 10 10 C 1.38833 * 120.67127 * 359.97438 * 9 8 7 11 11 C 1.37600 * 120.57301 * 359.97438 * 10 9 8 12 12 C 1.40704 * 119.87952 * 0.02562 * 11 10 9 13 13 C 1.40888 * 120.32328 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00158 * 215.51754 * 13 12 11 15 15 C 1.40272 * 120.00441 * 35.51760 * 13 12 11 16 16 N 1.30632 * 119.99352 * 9.12145 * 15 13 12 17 17 Si 1.86801 * 120.00540 * 189.12029 * 15 13 12 18 18 H 1.48503 * 109.46661 * 60.00060 * 17 15 13 19 19 H 1.48495 * 109.47248 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.46920 * 300.00355 * 17 15 13 21 21 C 1.53712 * 110.43058 * 237.76744 * 2 1 3 22 22 C 1.52940 * 112.48734 * 238.26018 * 21 2 1 23 23 C 1.55149 * 108.96479 * 30.09809 * 22 21 2 24 24 S 1.83401 * 110.34066 * 122.16916 * 2 1 3 25 25 H 1.09000 * 109.47358 * 60.70276 * 1 2 3 26 26 H 1.08994 * 109.47326 * 180.70160 * 1 2 3 27 27 H 1.09000 * 109.47464 * 300.70483 * 1 2 3 28 28 H 1.08998 * 109.47245 * 305.71148 * 3 2 1 29 29 H 1.09002 * 109.46964 * 185.71562 * 3 2 1 30 30 H 0.97003 * 120.00481 * 0.02562 * 4 3 2 31 31 H 1.07991 * 119.95963 * 359.95299 * 8 7 5 32 32 H 1.07991 * 119.66597 * 180.02562 * 9 8 7 33 33 H 1.08000 * 119.71216 * 179.72648 * 10 9 8 34 34 H 1.07997 * 120.05712 * 179.97438 * 11 10 9 35 35 H 0.97003 * 119.99625 * 180.02562 * 16 15 13 36 36 H 1.08996 * 108.88511 * 359.05082 * 21 2 1 37 37 H 1.09000 * 108.88445 * 117.46553 * 21 2 1 38 38 H 1.09002 * 109.60304 * 270.16719 * 22 21 2 39 39 H 1.09001 * 109.45141 * 149.94442 * 22 21 2 40 40 H 1.09009 * 111.13137 * 200.64883 * 23 22 21 41 41 H 1.09000 * 111.13231 * 76.47319 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0608 1.4349 0.0000 4 7 1.6977 2.0900 1.2589 5 6 2.0620 3.3681 1.4833 6 8 2.6927 3.9774 0.6407 7 6 1.6960 4.0276 2.7500 8 6 0.8969 3.3676 3.6797 9 6 0.5565 3.9894 4.8664 10 6 1.0043 5.2732 5.1471 11 6 1.7963 5.9503 4.2484 12 6 2.1571 5.3398 3.0331 13 6 2.9681 6.0243 2.1065 14 1 2.8050 5.8945 1.0468 15 6 3.9874 6.8745 2.5601 16 7 4.3033 6.8970 3.8275 17 14 4.8932 7.9744 1.3521 18 1 3.9262 8.8915 0.6969 19 1 5.9164 8.7693 2.0775 20 1 5.5570 7.1365 0.3215 21 6 2.0665 -0.7683 -1.2184 22 6 2.9673 -1.9388 -0.8217 23 6 2.5078 -2.4841 0.5562 24 16 2.1674 -0.9156 1.4556 25 1 -0.3634 0.5029 -0.8962 26 1 -0.3634 -1.0275 0.0126 27 1 -0.3634 0.5247 0.8836 28 1 1.6244 1.9838 -0.8344 29 1 3.1459 1.4208 -0.1023 30 1 1.1949 1.6040 1.9312 31 1 0.5421 2.3688 3.4733 32 1 -0.0634 3.4710 5.5828 33 1 0.7254 5.7460 6.0772 34 1 2.1397 6.9488 4.4752 35 1 5.0080 7.4852 4.1413 36 1 1.2234 -1.1510 -1.7935 37 1 2.6354 -0.0820 -1.8457 38 1 4.0006 -1.5985 -0.7541 39 1 2.8900 -2.7265 -1.5711 40 1 3.3040 -3.0499 1.0403 41 1 1.6040 -3.0856 0.4593 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601310878.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:02 Heat of formation + Delta-G solvation = -44.351532 kcal Electronic energy + Delta-G solvation = -22611.923936 eV Core-core repulsion = 19388.226907 eV Total energy + Delta-G solvation = -3223.697030 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.79213 -38.91995 -38.03131 -35.78977 -35.22831 -32.81086 -31.77151 -31.19697 -28.16889 -27.59561 -26.75968 -24.11554 -23.18354 -22.55912 -21.58822 -20.67061 -19.42779 -18.22695 -17.33898 -17.14142 -16.86542 -16.15394 -16.09869 -15.92552 -15.43329 -15.22587 -14.90764 -14.73032 -14.48549 -14.29898 -13.92234 -13.81567 -13.50139 -13.42188 -12.90198 -12.85598 -12.65886 -12.47201 -12.41560 -12.32299 -12.12774 -11.99828 -11.91064 -11.57846 -11.47926 -11.13527 -10.75042 -10.24933 -9.96493 -9.40773 -9.22521 -8.73082 -8.67594 -6.37373 0.50506 0.79957 1.01037 1.33084 1.41143 1.45106 1.50700 2.21236 2.33623 2.46749 2.79646 3.48533 3.54483 3.70369 3.77613 3.98876 4.12261 4.29340 4.32183 4.35036 4.51573 4.56074 4.63844 4.67281 4.73444 4.78771 4.88471 4.91434 5.00621 5.04246 5.08246 5.19681 5.23768 5.24240 5.33232 5.60048 5.62368 5.81162 6.04008 6.10086 6.33858 6.62476 6.77932 6.90758 6.99907 7.63694 8.30603 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.017161 B = 0.004166 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.182219 B = 6720.256657 C = 7728.617669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.007 4.007 3 C 0.146 3.854 4 N -0.724 5.724 5 C 0.560 3.440 6 O -0.578 6.578 7 C -0.281 4.281 8 C -0.055 4.055 9 C -0.235 4.235 10 C -0.091 4.091 11 C -0.175 4.175 12 C 0.117 3.883 13 C -0.464 4.464 14 H 0.087 0.913 15 C 0.031 3.969 16 N -0.824 5.824 17 Si 0.980 3.020 18 H -0.256 1.256 19 H -0.259 1.259 20 H -0.273 1.273 21 C -0.122 4.122 22 C -0.120 4.120 23 C -0.055 4.055 24 S -0.352 6.352 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.401 0.599 31 H 0.122 0.878 32 H 0.132 0.868 33 H 0.122 0.878 34 H 0.100 0.900 35 H 0.289 0.711 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.585 -17.100 -7.549 19.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.117 4.117 3 C 0.021 3.979 4 N -0.378 5.378 5 C 0.354 3.646 6 O -0.460 6.460 7 C -0.286 4.286 8 C -0.074 4.074 9 C -0.254 4.254 10 C -0.110 4.110 11 C -0.194 4.194 12 C 0.114 3.886 13 C -0.492 4.492 14 H 0.105 0.895 15 C -0.183 4.183 16 N -0.450 5.450 17 Si 0.801 3.199 18 H -0.180 1.180 19 H -0.183 1.183 20 H -0.198 1.198 21 C -0.161 4.161 22 C -0.159 4.159 23 C -0.202 4.202 24 S -0.125 6.125 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.238 0.762 31 H 0.140 0.860 32 H 0.150 0.850 33 H 0.140 0.860 34 H 0.118 0.882 35 H 0.100 0.900 36 H 0.119 0.881 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.815 -16.272 -6.813 18.286 hybrid contribution 0.382 0.292 -0.894 1.015 sum -4.433 -15.980 -7.707 18.287 Atomic orbital electron populations 1.22030 0.90301 1.03662 1.02842 1.23487 0.99502 0.94519 0.94163 1.21307 0.99246 0.90623 0.86724 1.45783 1.59283 1.12614 1.20158 1.18418 0.78133 0.81204 0.86884 1.90618 1.42155 1.65243 1.48025 1.19849 1.14046 0.96654 0.98005 1.21001 0.95199 0.97855 0.93341 1.20783 1.08748 0.96935 0.98904 1.21179 0.96374 0.95306 0.98123 1.21290 1.01502 1.00129 0.96468 1.17848 0.88875 0.89562 0.92358 1.20227 1.12669 1.20426 0.95917 0.89514 1.26838 0.97631 0.96472 0.97408 1.69746 1.26037 1.32519 1.16727 0.85291 0.78204 0.77908 0.78473 1.18044 1.18296 1.19847 1.22154 1.01315 0.97060 0.95571 1.22372 0.99871 0.97658 0.95998 1.24454 1.05459 0.94117 0.96201 1.88444 1.85662 1.16779 1.21653 0.90385 0.89860 0.92900 0.91066 0.93145 0.76170 0.86038 0.85020 0.86001 0.88197 0.90014 0.88055 0.90048 0.91422 0.87134 0.86946 0.87376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 8.26 71.98 0.59 -1.79 16 2 C -0.01 -0.15 0.84 -10.56 -0.01 -0.16 16 3 C 0.15 4.55 4.39 86.38 0.38 4.92 16 4 N -0.72 -27.25 4.97 -466.38 -2.32 -29.56 16 5 C 0.56 27.63 7.72 86.67 0.67 28.30 16 6 O -0.58 -32.60 13.53 -4.07 -0.06 -32.65 16 7 C -0.28 -14.46 5.92 -19.70 -0.12 -14.58 16 8 C -0.06 -2.39 9.52 22.51 0.21 -2.17 16 9 C -0.23 -9.68 10.03 22.41 0.22 -9.46 16 10 C -0.09 -4.10 10.01 22.26 0.22 -3.88 16 11 C -0.17 -9.28 8.61 22.72 0.20 -9.09 16 12 C 0.12 6.70 5.49 -21.11 -0.12 6.59 16 13 C -0.46 -27.50 7.77 23.41 0.18 -27.31 16 14 H 0.09 5.39 5.74 -2.91 -0.02 5.38 16 15 C 0.03 1.71 5.25 85.37 0.45 2.16 16 16 N -0.82 -45.23 11.24 21.88 0.25 -44.99 16 17 Si 0.98 42.62 29.57 68.60 2.03 44.65 16 18 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 19 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 21 C -0.12 -1.86 5.74 30.81 0.18 -1.68 16 22 C -0.12 -1.54 6.34 31.31 0.20 -1.34 16 23 C -0.05 -0.80 7.52 72.72 0.55 -0.25 16 24 S -0.35 -8.72 21.15 -56.49 -1.19 -9.92 16 25 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.05 1.14 7.28 -2.39 -0.02 1.12 16 28 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.40 13.68 5.15 -92.71 -0.48 13.21 16 31 H 0.12 4.34 6.42 -2.92 -0.02 4.32 16 32 H 0.13 4.39 8.06 -2.92 -0.02 4.37 16 33 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 34 H 0.10 5.50 6.70 -2.91 -0.02 5.48 16 35 H 0.29 14.35 8.29 -92.71 -0.77 13.58 16 36 H 0.10 1.07 7.62 -2.39 -0.02 1.05 16 37 H 0.08 1.31 7.62 -2.39 -0.02 1.30 16 38 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.11 0.80 8.14 -2.39 -0.02 0.79 16 40 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -71.17 341.29 3.08 -68.08 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: 0.56 Total: 34.13 kcal Atomic # 6 Polarization: -33.55 SS G_CDS: 3.81 Total: -29.74 kcal Atomic # 7 Polarization: -72.48 SS G_CDS: -2.07 Total: -74.55 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -0.06 Total: -32.65 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.19 Total: -9.92 kcal Total: -71.17 3.08 -68.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601310878.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.731 kcal (2) G-P(sol) polarization free energy of solvation -71.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds