Wall clock time and date at job start Tue Mar 31 2020 08:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38086 * 120.02384 * 2 1 4 4 C 1.38501 * 120.05159 * 180.27751 * 3 2 1 5 5 F 1.35103 * 119.94367 * 179.73831 * 4 3 2 6 6 C 1.38548 * 120.11305 * 359.71765 * 4 3 2 7 7 C 1.38030 * 120.05113 * 0.02562 * 6 4 3 8 8 C 1.38958 * 120.03328 * 179.72059 * 2 1 3 9 9 N 1.39743 * 120.05183 * 359.97438 * 8 2 1 10 10 C 1.36854 * 119.99765 * 89.73006 * 9 8 2 11 11 H 1.07990 * 119.99944 * 185.21904 * 10 9 8 12 12 C 1.38994 * 119.99922 * 5.21708 * 10 9 8 13 13 N 1.31371 * 120.00318 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99805 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47126 * 60.00418 * 14 12 10 16 16 H 1.48506 * 109.46789 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47106 * 299.99701 * 14 12 10 18 18 C 1.34775 * 120.00262 * 269.72835 * 9 8 2 19 19 O 1.21662 * 119.99534 * 5.24728 * 18 9 8 20 20 C 1.46900 * 119.99950 * 185.24632 * 18 9 8 21 21 C 1.32253 * 118.88561 * 75.23336 * 20 18 9 22 22 C 1.50274 * 122.55350 * 180.59716 * 21 20 18 23 23 O 1.43032 * 110.01131 * 343.90982 * 22 21 20 24 24 C 1.43262 * 112.95555 * 50.91721 * 23 22 21 25 25 C 1.50414 * 118.88822 * 255.20658 * 20 18 9 26 26 H 1.09006 * 109.47201 * 270.27623 * 1 2 3 27 27 H 1.08993 * 109.47534 * 30.27985 * 1 2 3 28 28 H 1.09002 * 109.46816 * 150.28535 * 1 2 3 29 29 H 1.07996 * 119.97071 * 359.96971 * 3 2 1 30 30 H 1.07995 * 119.97145 * 179.97438 * 6 4 3 31 31 H 1.08003 * 120.02853 * 179.97438 * 7 6 4 32 32 H 0.96997 * 120.00534 * 180.02562 * 13 12 10 33 33 H 1.08003 * 118.72879 * 0.32201 * 21 20 18 34 34 H 1.09006 * 109.36044 * 104.28726 * 22 21 20 35 35 H 1.09002 * 109.37161 * 223.89986 * 22 21 20 36 36 H 1.08996 * 109.64339 * 171.25708 * 24 23 22 37 37 H 1.09003 * 109.63868 * 50.63920 * 24 23 22 38 38 H 1.08994 * 109.45840 * 283.39707 * 25 20 18 39 39 H 1.09004 * 109.45258 * 43.33615 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1956 0.0000 4 6 3.5829 1.1963 -0.0058 5 9 4.2567 2.3673 -0.0111 6 6 4.2786 -0.0019 -0.0057 7 6 3.5925 -1.1996 -0.0004 8 6 2.2025 -1.2030 0.0059 9 7 1.5055 -2.4142 0.0123 10 6 1.1590 -3.0105 -1.1697 11 1 0.5484 -3.9012 -1.1665 12 6 1.5930 -2.4697 -2.3744 13 7 2.3362 -1.3865 -2.3783 14 14 1.1194 -3.2833 -3.9878 15 1 -0.3599 -3.3041 -4.1162 16 1 1.7041 -2.5182 -5.1183 17 1 1.6380 -4.6746 -4.0117 18 6 1.1747 -2.9952 1.1826 19 8 1.3974 -2.4203 2.2314 20 6 0.5452 -4.3224 1.1916 21 6 1.2930 -5.3858 0.9486 22 6 0.7327 -6.7800 0.9245 23 8 -0.5538 -6.8013 1.5491 24 6 -1.4406 -5.7998 1.0363 25 6 -0.9279 -4.4261 1.4775 26 1 -0.3634 0.0050 1.0277 27 1 -0.3634 0.8874 -0.5181 28 1 -0.3633 -0.8926 -0.5094 29 1 1.6578 2.1308 -0.0005 30 1 5.3585 0.0013 -0.0107 31 1 4.1352 -2.1334 -0.0007 32 1 2.6388 -1.0089 -3.2189 33 1 2.3466 -5.2465 0.7558 34 1 0.6424 -7.1153 -0.1088 35 1 1.4046 -7.4490 1.4621 36 1 -2.4433 -5.9609 1.4320 37 1 -1.4606 -5.8510 -0.0524 38 1 -1.1000 -4.3006 2.5464 39 1 -1.4595 -3.6474 0.9306 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602387857.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:17 Heat of formation + Delta-G solvation = -70.213153 kcal Electronic energy + Delta-G solvation = -25790.591138 eV Core-core repulsion = 21999.559488 eV Total energy + Delta-G solvation = -3791.031650 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.07702 -39.93210 -38.79264 -37.20446 -34.78935 -33.23737 -31.90479 -31.60473 -30.81897 -28.81142 -26.38691 -25.74426 -24.72432 -23.52452 -22.13193 -21.02398 -19.89064 -18.56229 -17.48538 -16.80041 -16.31253 -16.08503 -15.69854 -15.25729 -14.94310 -14.77162 -14.69898 -14.16099 -13.88283 -13.49825 -13.11339 -13.01354 -12.70884 -12.57517 -12.43964 -12.28104 -12.12949 -12.01040 -11.61952 -11.31525 -11.14975 -11.13827 -10.80127 -10.65887 -10.55442 -10.48119 -10.31903 -9.70425 -9.57028 -8.74325 -8.39243 -8.22452 -7.90691 -7.63824 -6.19583 -4.13276 2.20558 2.28176 2.37679 2.99751 3.08927 3.10998 3.55691 3.90486 4.04402 4.48038 4.61406 4.92228 5.12812 5.15203 5.27186 5.32580 5.48923 5.57879 5.62493 5.63997 5.67270 5.81880 5.93790 5.98108 6.18766 6.20490 6.22568 6.38766 6.39558 6.59092 6.73007 6.79538 6.98019 7.05211 7.09914 7.16305 7.25109 7.29908 7.43876 7.60846 7.84252 8.28103 8.85231 9.19348 9.61661 10.49391 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.015014 B = 0.005946 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.489123 B = 4708.060830 C = 5658.083013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.050 4.050 3 C -0.149 4.149 4 C 0.065 3.935 5 F -0.159 7.159 6 C -0.152 4.152 7 C -0.059 4.059 8 C 0.252 3.748 9 N -0.405 5.405 10 C -0.339 4.339 11 H 0.105 0.895 12 C 0.039 3.961 13 N -0.853 5.853 14 Si 0.924 3.076 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.273 1.273 18 C 0.495 3.505 19 O -0.589 6.589 20 C -0.096 4.096 21 C -0.177 4.177 22 C 0.096 3.904 23 O -0.383 6.383 24 C 0.061 3.939 25 C -0.107 4.107 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.274 0.726 33 H 0.119 0.881 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.057 0.943 38 H 0.084 0.916 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.384 -4.135 0.720 5.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.051 4.051 3 C -0.169 4.169 4 C 0.046 3.954 5 F -0.138 7.138 6 C -0.171 4.171 7 C -0.078 4.078 8 C 0.161 3.839 9 N -0.120 5.120 10 C -0.465 4.465 11 H 0.123 0.877 12 C -0.167 4.167 13 N -0.490 5.490 14 Si 0.750 3.250 15 H -0.198 1.198 16 H -0.207 1.207 17 H -0.198 1.198 18 C 0.285 3.715 19 O -0.474 6.474 20 C -0.099 4.099 21 C -0.196 4.196 22 C 0.020 3.980 23 O -0.302 6.302 24 C -0.015 4.015 25 C -0.145 4.145 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.130 0.870 32 H 0.086 0.914 33 H 0.137 0.863 34 H 0.083 0.917 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.201 -3.800 1.173 5.105 hybrid contribution 0.259 0.173 -1.509 1.541 sum -2.942 -3.628 -0.336 4.683 Atomic orbital electron populations 1.20607 0.91781 1.02600 1.00964 1.19473 0.95598 0.91512 0.98566 1.20476 0.91927 0.97949 1.06536 1.17409 0.90006 0.80495 1.07462 1.91378 1.80771 1.46927 1.94753 1.20545 0.99099 0.91218 1.06288 1.20614 0.93350 0.96450 0.97426 1.16787 0.89781 0.84789 0.92573 1.41265 1.47989 1.17149 1.05635 1.19646 1.33305 1.11811 0.81765 0.87695 1.25274 0.95830 0.96003 0.99605 1.69845 1.32487 1.19035 1.27584 0.86023 0.78924 0.79105 0.80914 1.19791 1.20734 1.19789 1.18104 0.83571 0.86487 0.83325 1.90720 1.59762 1.65339 1.31584 1.20592 0.95660 0.93598 1.00001 1.23124 1.00615 0.94127 1.01728 1.21423 0.84329 0.94353 0.97917 1.88090 1.23574 1.54961 1.63556 1.22641 0.93342 0.87041 0.98501 1.20926 0.92482 0.98360 1.02712 0.92415 0.92839 0.90449 0.86506 0.86522 0.87006 0.91368 0.86332 0.91736 0.88296 0.88684 0.92485 0.89806 0.89698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.06 9.77 36.00 0.35 -1.71 16 2 C -0.05 -1.11 5.34 -104.41 -0.56 -1.67 16 3 C -0.15 -3.13 9.67 -39.54 -0.38 -3.51 16 4 C 0.07 1.37 7.30 -39.37 -0.29 1.09 16 5 F -0.16 -3.17 17.27 2.25 0.04 -3.13 16 6 C -0.15 -3.17 10.02 -39.54 -0.40 -3.57 16 7 C -0.06 -1.34 8.68 -39.37 -0.34 -1.68 16 8 C 0.25 5.97 2.22 -83.70 -0.19 5.78 16 9 N -0.40 -9.45 1.78 -60.28 -0.11 -9.56 16 10 C -0.34 -7.76 8.51 -15.03 -0.13 -7.89 16 11 H 0.11 2.28 6.41 -52.49 -0.34 1.95 16 12 C 0.04 0.90 5.44 -17.47 -0.10 0.81 16 13 N -0.85 -20.57 9.32 55.50 0.52 -20.05 16 14 Si 0.92 18.28 29.55 -169.99 -5.02 13.25 16 15 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 16 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 17 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 18 C 0.50 11.42 6.84 -12.76 -0.09 11.34 16 19 O -0.59 -15.38 17.09 5.22 0.09 -15.29 16 20 C -0.10 -1.84 3.99 -103.18 -0.41 -2.25 16 21 C -0.18 -3.04 9.12 -36.44 -0.33 -3.38 16 22 C 0.10 1.34 7.04 35.80 0.25 1.59 16 23 O -0.38 -5.73 10.84 -35.23 -0.38 -6.11 16 24 C 0.06 0.83 6.88 37.22 0.26 1.08 16 25 C -0.11 -1.72 6.08 -27.96 -0.17 -1.89 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.05 0.94 8.09 -51.93 -0.42 0.52 16 28 H 0.08 1.66 6.90 -51.93 -0.36 1.30 16 29 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 30 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 31 H 0.11 2.49 8.06 -52.48 -0.42 2.07 16 32 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 33 H 0.12 2.10 8.00 -52.48 -0.42 1.68 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 38 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 39 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 332.89 15.07 5.02 5.02 Total: -1.00 -27.96 332.89 -7.26 -35.22 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -4.89 Total: 6.51 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -2.52 Total: -5.86 kcal Atomic # 7 Polarization: -30.02 SS G_CDS: 0.41 Total: -29.61 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.29 Total: -21.40 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.04 Total: -3.13 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.02 Total: 13.25 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.96 -7.26 -35.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602387857.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.990 kcal (2) G-P(sol) polarization free energy of solvation -27.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds