Wall clock time and date at job start Tue Mar 31 2020 08:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38086 * 120.02384 * 2 1 4 4 C 1.38501 * 120.05159 * 180.27751 * 3 2 1 5 5 F 1.35103 * 119.94367 * 179.73831 * 4 3 2 6 6 C 1.38548 * 120.11305 * 359.71765 * 4 3 2 7 7 C 1.38030 * 120.05113 * 0.02562 * 6 4 3 8 8 C 1.38958 * 120.03328 * 179.72059 * 2 1 3 9 9 N 1.39743 * 120.05183 * 359.97438 * 8 2 1 10 10 C 1.36854 * 119.99765 * 89.73006 * 9 8 2 11 11 H 1.07990 * 119.99944 * 185.21904 * 10 9 8 12 12 C 1.38994 * 119.99922 * 5.21708 * 10 9 8 13 13 N 1.31371 * 120.00318 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99805 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47126 * 60.00418 * 14 12 10 16 16 H 1.48506 * 109.46789 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47106 * 299.99701 * 14 12 10 18 18 C 1.34775 * 120.00262 * 269.72835 * 9 8 2 19 19 O 1.21662 * 119.99534 * 5.24728 * 18 9 8 20 20 C 1.46900 * 119.99950 * 185.24632 * 18 9 8 21 21 C 1.32253 * 118.88561 * 75.23336 * 20 18 9 22 22 C 1.50274 * 122.55350 * 180.59716 * 21 20 18 23 23 O 1.43032 * 110.01131 * 343.90982 * 22 21 20 24 24 C 1.43262 * 112.95555 * 50.91721 * 23 22 21 25 25 C 1.50414 * 118.88822 * 255.20658 * 20 18 9 26 26 H 1.09006 * 109.47201 * 270.27623 * 1 2 3 27 27 H 1.08993 * 109.47534 * 30.27985 * 1 2 3 28 28 H 1.09002 * 109.46816 * 150.28535 * 1 2 3 29 29 H 1.07996 * 119.97071 * 359.96971 * 3 2 1 30 30 H 1.07995 * 119.97145 * 179.97438 * 6 4 3 31 31 H 1.08003 * 120.02853 * 179.97438 * 7 6 4 32 32 H 0.96997 * 120.00534 * 180.02562 * 13 12 10 33 33 H 1.08003 * 118.72879 * 0.32201 * 21 20 18 34 34 H 1.09006 * 109.36044 * 104.28726 * 22 21 20 35 35 H 1.09002 * 109.37161 * 223.89986 * 22 21 20 36 36 H 1.08996 * 109.64339 * 171.25708 * 24 23 22 37 37 H 1.09003 * 109.63868 * 50.63920 * 24 23 22 38 38 H 1.08994 * 109.45840 * 283.39707 * 25 20 18 39 39 H 1.09004 * 109.45258 * 43.33615 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1956 0.0000 4 6 3.5829 1.1963 -0.0058 5 9 4.2567 2.3673 -0.0111 6 6 4.2786 -0.0019 -0.0057 7 6 3.5925 -1.1996 -0.0004 8 6 2.2025 -1.2030 0.0059 9 7 1.5055 -2.4142 0.0123 10 6 1.1590 -3.0105 -1.1697 11 1 0.5484 -3.9012 -1.1665 12 6 1.5930 -2.4697 -2.3744 13 7 2.3362 -1.3865 -2.3783 14 14 1.1194 -3.2833 -3.9878 15 1 -0.3599 -3.3041 -4.1162 16 1 1.7041 -2.5182 -5.1183 17 1 1.6380 -4.6746 -4.0117 18 6 1.1747 -2.9952 1.1826 19 8 1.3974 -2.4203 2.2314 20 6 0.5452 -4.3224 1.1916 21 6 1.2930 -5.3858 0.9486 22 6 0.7327 -6.7800 0.9245 23 8 -0.5538 -6.8013 1.5491 24 6 -1.4406 -5.7998 1.0363 25 6 -0.9279 -4.4261 1.4775 26 1 -0.3634 0.0050 1.0277 27 1 -0.3634 0.8874 -0.5181 28 1 -0.3633 -0.8926 -0.5094 29 1 1.6578 2.1308 -0.0005 30 1 5.3585 0.0013 -0.0107 31 1 4.1352 -2.1334 -0.0007 32 1 2.6388 -1.0089 -3.2189 33 1 2.3466 -5.2465 0.7558 34 1 0.6424 -7.1153 -0.1088 35 1 1.4046 -7.4490 1.4621 36 1 -2.4433 -5.9609 1.4320 37 1 -1.4606 -5.8510 -0.0524 38 1 -1.1000 -4.3006 2.5464 39 1 -1.4595 -3.6474 0.9306 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602387857.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:17 Heat of formation + Delta-G solvation = -83.962135 kcal Electronic energy + Delta-G solvation = -25791.187339 eV Core-core repulsion = 21999.559488 eV Total energy + Delta-G solvation = -3791.627851 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.70829 -41.57904 -40.10780 -38.84559 -36.57394 -34.61094 -33.62739 -33.32386 -31.99415 -30.48670 -28.01025 -27.26025 -26.33550 -24.71077 -23.76239 -22.67756 -21.54192 -20.20038 -18.96207 -18.29281 -17.97023 -17.50394 -17.14503 -16.77341 -16.64287 -16.39546 -16.02860 -15.62097 -15.41112 -15.11624 -14.63566 -14.54123 -14.30368 -14.17049 -14.00735 -13.73139 -13.49319 -13.42618 -13.27075 -12.90076 -12.80231 -12.48967 -12.40162 -12.26552 -12.19660 -12.00420 -11.75832 -11.28875 -11.00908 -10.28352 -10.02175 -9.81471 -9.60969 -9.33901 -7.94848 -5.93903 0.51665 0.57553 0.94213 1.41915 1.47992 1.55813 1.85586 2.26024 2.77528 2.90119 3.04891 3.18574 3.47610 3.88736 3.95878 3.96778 4.05692 4.08669 4.32759 4.36123 4.43751 4.57501 4.61703 4.62851 4.73074 4.77191 4.79503 4.87828 4.94603 5.01275 5.06081 5.29961 5.36776 5.38422 5.42753 5.51402 5.68472 5.77583 5.89317 6.14210 6.17828 6.51091 7.06699 7.43285 7.85453 8.72070 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.015014 B = 0.005946 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.489123 B = 4708.060830 C = 5658.083013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.071 4.071 3 C -0.150 4.150 4 C 0.060 3.940 5 F -0.151 7.151 6 C -0.150 4.150 7 C -0.079 4.079 8 C 0.230 3.770 9 N -0.407 5.407 10 C -0.346 4.346 11 H 0.114 0.886 12 C 0.003 3.997 13 N -0.872 5.872 14 Si 0.984 3.016 15 H -0.265 1.265 16 H -0.290 1.290 17 H -0.266 1.266 18 C 0.485 3.515 19 O -0.633 6.633 20 C -0.126 4.126 21 C -0.162 4.162 22 C 0.098 3.902 23 O -0.392 6.392 24 C 0.066 3.934 25 C -0.104 4.104 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.059 0.941 29 H 0.143 0.857 30 H 0.141 0.859 31 H 0.105 0.895 32 H 0.269 0.731 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.280 -5.194 -0.215 6.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.073 4.073 3 C -0.169 4.169 4 C 0.041 3.959 5 F -0.130 7.130 6 C -0.169 4.169 7 C -0.099 4.099 8 C 0.138 3.862 9 N -0.121 5.121 10 C -0.472 4.472 11 H 0.132 0.868 12 C -0.201 4.201 13 N -0.509 5.509 14 Si 0.808 3.192 15 H -0.190 1.190 16 H -0.216 1.216 17 H -0.190 1.190 18 C 0.276 3.724 19 O -0.521 6.521 20 C -0.129 4.129 21 C -0.182 4.182 22 C 0.022 3.978 23 O -0.311 6.311 24 C -0.010 4.010 25 C -0.141 4.141 26 H 0.078 0.922 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.160 0.840 30 H 0.159 0.841 31 H 0.123 0.877 32 H 0.080 0.920 33 H 0.124 0.876 34 H 0.105 0.895 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.103 -4.871 0.231 6.373 hybrid contribution 0.627 0.552 -1.204 1.466 sum -3.477 -4.319 -0.973 5.629 Atomic orbital electron populations 1.20538 0.90563 1.02830 1.01146 1.19791 0.96791 0.91677 0.99029 1.20768 0.92185 0.98559 1.05386 1.17482 0.90245 0.80769 1.07380 1.91395 1.80597 1.46355 1.94685 1.20777 1.00389 0.90654 1.05127 1.20688 0.93441 0.96948 0.98827 1.17134 0.90361 0.85521 0.93154 1.41446 1.47489 1.17149 1.05986 1.19914 1.33411 1.12120 0.81767 0.86828 1.25989 0.95653 0.96365 1.02093 1.70008 1.33201 1.20018 1.27635 0.85097 0.78798 0.78274 0.76989 1.19030 1.21624 1.19041 1.18798 0.83231 0.87719 0.82601 1.90663 1.61655 1.66908 1.32880 1.20651 0.97516 0.91930 1.02836 1.23414 0.99918 0.95692 0.99132 1.21608 0.84407 0.92203 0.99618 1.88089 1.23834 1.55072 1.64060 1.22764 0.94188 0.84908 0.99175 1.20958 0.90464 1.00307 1.02405 0.92219 0.90436 0.92227 0.83953 0.84111 0.87727 0.92007 0.87575 0.89535 0.85882 0.85722 0.91553 0.90372 0.89954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.78 9.77 71.24 0.70 -3.08 16 2 C -0.07 -3.21 5.34 -19.73 -0.11 -3.31 16 3 C -0.15 -6.17 9.67 22.30 0.22 -5.96 16 4 C 0.06 2.49 7.30 22.41 0.16 2.66 16 5 F -0.15 -5.80 17.27 44.97 0.78 -5.02 16 6 C -0.15 -6.26 10.02 22.29 0.22 -6.04 16 7 C -0.08 -3.69 8.68 22.40 0.19 -3.50 16 8 C 0.23 11.09 2.22 38.24 0.08 11.17 16 9 N -0.41 -19.39 1.78 -462.86 -0.82 -20.22 16 10 C -0.35 -15.88 8.51 84.09 0.72 -15.16 16 11 H 0.11 4.88 6.41 -2.92 -0.02 4.86 16 12 C 0.00 0.13 5.44 84.94 0.46 0.59 16 13 N -0.87 -42.21 9.32 21.67 0.20 -42.01 16 14 Si 0.98 36.72 29.55 68.60 2.03 38.75 16 15 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 16 H -0.29 -11.17 7.11 99.48 0.71 -10.46 16 17 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 18 C 0.48 23.03 6.84 86.51 0.59 23.62 16 19 O -0.63 -34.39 17.09 -4.23 -0.07 -34.46 16 20 C -0.13 -4.87 3.99 -18.73 -0.07 -4.94 16 21 C -0.16 -5.46 9.12 24.51 0.22 -5.24 16 22 C 0.10 2.46 7.04 71.10 0.50 2.96 16 23 O -0.39 -10.60 10.84 -148.98 -1.62 -12.22 16 24 C 0.07 1.60 6.88 72.02 0.50 2.10 16 25 C -0.10 -3.25 6.08 29.80 0.18 -3.07 16 26 H 0.06 2.32 8.14 -2.38 -0.02 2.31 16 27 H 0.08 2.66 8.09 -2.39 -0.02 2.64 16 28 H 0.06 2.57 6.90 -2.39 -0.02 2.56 16 29 H 0.14 4.99 8.06 -2.91 -0.02 4.97 16 30 H 0.14 5.02 8.06 -2.91 -0.02 5.00 16 31 H 0.10 4.86 8.06 -2.91 -0.02 4.83 16 32 H 0.27 12.82 8.31 -92.71 -0.77 12.05 16 33 H 0.11 3.77 8.00 -2.91 -0.02 3.75 16 34 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.07 1.50 8.09 -2.39 -0.02 1.49 16 38 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 Total: -1.00 -60.58 332.89 6.13 -54.45 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: 1.07 Total: 27.93 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 4.57 Total: -7.21 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: -0.62 Total: -62.22 kcal Atomic # 8 Polarization: -44.99 SS G_CDS: -1.69 Total: -46.68 kcal Atomic # 9 Polarization: -5.80 SS G_CDS: 0.78 Total: -5.02 kcal Atomic # 14 Polarization: 36.72 SS G_CDS: 2.03 Total: 38.75 kcal Total: -60.58 6.13 -54.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602387857.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.513 kcal (2) G-P(sol) polarization free energy of solvation -60.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds