Wall clock time and date at job start Tue Mar 31 2020 08:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46808 * 2 1 4 4 N 1.46494 * 109.46669 * 119.99830 * 2 1 3 5 5 C 1.46502 * 120.00428 * 294.97605 * 4 2 1 6 6 C 1.50701 * 109.47343 * 263.01897 * 5 4 2 7 7 H 1.08004 * 119.99506 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00213 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00027 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 120.00169 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47143 * 59.99712 * 10 8 6 12 12 H 1.48498 * 109.47235 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46828 * 299.99802 * 10 8 6 14 14 C 1.34781 * 120.00011 * 114.98030 * 4 2 1 15 15 O 1.21651 * 119.99607 * 3.71105 * 14 4 2 16 16 C 1.46977 * 120.00337 * 183.71470 * 14 4 2 17 17 C 1.35806 * 125.14188 * 173.36942 * 16 14 4 18 18 C 1.46244 * 106.08848 * 180.13032 * 17 16 14 19 19 C 1.39761 * 134.16712 * 179.89434 * 18 17 16 20 20 C 1.36605 * 119.75518 * 179.70186 * 19 18 17 21 21 C 1.38831 * 120.46148 * 359.96328 * 20 19 18 22 22 C 1.37976 * 120.72006 * 0.04119 * 21 20 19 23 23 F 1.35095 * 120.09424 * 180.02562 * 22 21 20 24 24 C 1.39235 * 119.81207 * 359.97438 * 22 21 20 25 25 O 1.34743 * 133.24436 * 179.97438 * 24 22 21 26 26 H 1.09000 * 109.47455 * 299.99916 * 1 2 3 27 27 H 1.09004 * 109.46949 * 60.00236 * 1 2 3 28 28 H 1.08995 * 109.47214 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46946 * 239.99970 * 2 1 3 30 30 H 1.09004 * 109.46731 * 179.97438 * 3 2 1 31 31 H 1.08990 * 109.47129 * 299.99851 * 3 2 1 32 32 H 1.09000 * 109.47044 * 59.99833 * 3 2 1 33 33 H 1.08999 * 109.46903 * 23.01998 * 5 4 2 34 34 H 1.08995 * 109.47215 * 143.01819 * 5 4 2 35 35 H 0.97006 * 120.00270 * 180.02562 * 9 8 6 36 36 H 1.08002 * 126.95467 * 359.76289 * 17 16 14 37 37 H 1.07999 * 120.12509 * 359.66227 * 19 18 17 38 38 H 1.08002 * 119.76360 * 179.97438 * 20 19 18 39 39 H 1.08002 * 119.63930 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7573 -0.1292 2.5240 6 6 2.9574 0.6598 2.9805 7 1 3.8276 0.7352 2.3452 8 6 2.9444 1.2855 4.2090 9 7 1.8850 1.1933 4.9827 10 14 4.4317 2.2641 4.7746 11 1 4.6941 3.3655 3.8139 12 1 4.1673 2.8330 6.1206 13 1 5.6164 1.3710 4.8393 14 6 2.7076 -1.8424 1.0752 15 8 2.9828 -2.2734 -0.0286 16 6 3.1267 -2.5778 2.2767 17 6 3.7094 -3.8045 2.2789 18 6 3.9461 -4.1383 3.6830 19 6 4.5028 -5.2378 4.3420 20 6 4.5871 -5.2396 5.7055 21 6 4.1243 -4.1567 6.4407 22 6 3.5711 -3.0613 5.8100 23 9 3.1253 -2.0142 6.5378 24 6 3.4747 -3.0377 4.4212 25 8 2.9958 -2.1337 3.5443 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 0.8879 0.5265 2.4767 34 1 1.5646 -0.9378 3.2289 35 1 1.8757 1.6338 5.8470 36 1 3.9444 -4.4132 1.4183 37 1 4.8645 -6.0832 3.7756 38 1 5.0170 -6.0894 6.2149 39 1 4.1979 -4.1720 7.5181 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610239601.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:30 Heat of formation + Delta-G solvation = -45.340626 kcal Electronic energy + Delta-G solvation = -25777.666889 eV Core-core repulsion = 21987.713792 eV Total energy + Delta-G solvation = -3789.953096 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.43458 -42.08591 -39.22063 -37.50635 -36.02064 -32.96852 -32.23288 -31.56655 -29.88142 -29.16385 -27.29699 -26.63720 -24.28354 -23.09714 -22.60552 -21.50551 -20.53440 -18.84235 -17.66912 -17.35598 -16.65858 -16.37403 -15.94409 -15.86754 -15.33258 -14.84749 -14.76171 -14.44755 -14.07040 -13.80724 -13.26955 -13.07448 -12.80862 -12.70542 -12.57340 -12.31985 -11.87372 -11.80830 -11.74360 -11.65586 -11.33619 -11.16222 -10.99091 -10.83529 -10.66540 -10.32146 -9.99760 -9.76982 -9.71765 -9.59334 -8.50982 -8.42306 -8.02646 -7.73743 -6.09527 -4.14007 0.78194 1.43088 2.09884 2.88012 3.28444 3.33641 3.35994 3.65487 3.67395 3.75544 4.37633 4.39793 4.67727 4.84880 5.08011 5.24899 5.26353 5.28963 5.39117 5.51595 5.60095 5.73011 5.76813 5.97648 6.04117 6.09461 6.12254 6.18585 6.28717 6.36004 6.42916 6.55241 6.64922 6.69912 6.74760 6.93992 7.24823 7.38044 7.52769 7.82116 8.10356 8.11703 8.63497 8.89339 9.50944 10.98207 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.011835 B = 0.007275 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.365555 B = 3847.639213 C = 5544.632882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.134 3.866 3 C -0.152 4.152 4 N -0.573 5.573 5 C 0.232 3.768 6 C -0.528 4.528 7 H 0.057 0.943 8 C 0.073 3.927 9 N -0.884 5.884 10 Si 0.888 3.112 11 H -0.276 1.276 12 H -0.285 1.285 13 H -0.277 1.277 14 C 0.590 3.410 15 O -0.552 6.552 16 C 0.019 3.981 17 C -0.153 4.153 18 C -0.115 4.115 19 C -0.081 4.081 20 C -0.118 4.118 21 C -0.139 4.139 22 C 0.124 3.876 23 F -0.121 7.121 24 C 0.026 3.974 25 O -0.114 6.114 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.043 0.957 34 H 0.051 0.949 35 H 0.264 0.736 36 H 0.167 0.833 37 H 0.131 0.869 38 H 0.135 0.865 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.277 -9.463 -1.110 9.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.031 3.969 3 C -0.210 4.210 4 N -0.302 5.302 5 C 0.113 3.887 6 C -0.567 4.567 7 H 0.075 0.925 8 C -0.131 4.131 9 N -0.522 5.522 10 Si 0.716 3.284 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.203 1.203 14 C 0.377 3.623 15 O -0.434 6.434 16 C -0.033 4.033 17 C -0.174 4.174 18 C -0.117 4.117 19 C -0.100 4.100 20 C -0.136 4.136 21 C -0.158 4.158 22 C 0.104 3.896 23 F -0.099 7.099 24 C -0.024 4.024 25 O -0.011 6.011 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.108 0.892 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.184 0.816 37 H 0.149 0.851 38 H 0.152 0.848 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.148 -9.234 -1.381 9.407 hybrid contribution 0.835 0.802 0.736 1.372 sum 1.984 -8.432 -0.644 8.686 Atomic orbital electron populations 1.22145 0.95418 1.01833 1.02325 1.20993 0.93694 0.93824 0.88366 1.22051 1.01753 0.95106 1.02063 1.48383 1.50849 1.20792 1.10179 1.19705 0.97775 0.94958 0.76221 1.21234 1.00860 1.32080 1.02506 0.92506 1.24794 0.95905 0.96220 0.96139 1.69882 1.28258 1.43245 1.10765 0.86711 0.83405 0.80385 0.77934 1.20203 1.21098 1.20264 1.16782 0.78910 0.81246 0.85396 1.90764 1.58511 1.69582 1.24525 1.22236 1.02409 0.94774 0.83859 1.22516 1.03502 0.96076 0.95297 1.19797 1.03585 0.95464 0.92815 1.20294 0.98809 0.96756 0.94097 1.20483 1.01420 0.98265 0.93430 1.20890 1.01485 0.92566 1.00882 1.16641 1.01865 0.86998 0.84099 1.91608 1.86719 1.55020 1.76544 1.19982 1.00857 0.90534 0.91073 1.84963 1.64363 1.38600 1.13222 0.91667 0.91955 0.92871 0.89223 0.92426 0.92892 0.90608 0.93888 0.93175 0.92591 0.81560 0.85096 0.84750 0.83952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.26 37.16 0.34 -2.12 16 2 C 0.13 2.43 3.22 -67.93 -0.22 2.21 16 3 C -0.15 -2.65 8.66 37.16 0.32 -2.32 16 4 N -0.57 -12.23 2.38 -168.89 -0.40 -12.63 16 5 C 0.23 5.58 3.91 -5.19 -0.02 5.56 16 6 C -0.53 -13.86 7.44 -34.44 -0.26 -14.12 16 7 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 8 C 0.07 1.97 5.46 -17.82 -0.10 1.87 16 9 N -0.88 -24.74 13.29 55.43 0.74 -24.00 16 10 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 C 0.59 12.79 7.58 -12.72 -0.10 12.70 16 15 O -0.55 -12.24 16.17 5.23 0.08 -12.16 16 16 C 0.02 0.40 6.70 -36.91 -0.25 0.15 16 17 C -0.15 -2.71 10.81 -37.24 -0.40 -3.11 16 18 C -0.12 -1.96 6.38 -105.20 -0.67 -2.63 16 19 C -0.08 -1.06 10.06 -39.60 -0.40 -1.46 16 20 C -0.12 -1.38 9.98 -39.95 -0.40 -1.78 16 21 C -0.14 -1.92 9.99 -39.46 -0.39 -2.31 16 22 C 0.12 2.29 7.32 -39.31 -0.29 2.00 16 23 F -0.12 -2.55 17.27 2.25 0.04 -2.51 16 24 C 0.03 0.52 7.39 -38.30 -0.28 0.24 16 25 O -0.11 -2.59 6.38 2.71 0.02 -2.57 16 26 H 0.06 1.07 6.91 -51.93 -0.36 0.71 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.09 1.62 6.91 -51.93 -0.36 1.26 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.46 7.09 -51.93 -0.37 1.10 16 33 H 0.04 1.07 6.48 -51.93 -0.34 0.73 16 34 H 0.05 1.31 5.43 -51.93 -0.28 1.03 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.17 2.52 8.06 -52.49 -0.42 2.09 16 37 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 LS Contribution 334.23 15.07 5.04 5.04 Total: -1.00 -29.98 334.23 -7.25 -37.23 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -4.63 Total: 0.33 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -3.11 Total: -5.12 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.34 Total: -36.63 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: 0.10 Total: -14.73 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.04 Total: -2.51 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.98 -7.25 -37.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610239601.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.111 kcal (2) G-P(sol) polarization free energy of solvation -29.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds