Wall clock time and date at job start Tue Mar 31 2020 08:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46808 * 2 1 4 4 N 1.46494 * 109.46669 * 119.99830 * 2 1 3 5 5 C 1.46502 * 120.00428 * 294.97605 * 4 2 1 6 6 C 1.50701 * 109.47343 * 263.01897 * 5 4 2 7 7 H 1.08004 * 119.99506 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00213 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00027 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 120.00169 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47143 * 59.99712 * 10 8 6 12 12 H 1.48498 * 109.47235 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46828 * 299.99802 * 10 8 6 14 14 C 1.34781 * 120.00011 * 114.98030 * 4 2 1 15 15 O 1.21651 * 119.99607 * 3.71105 * 14 4 2 16 16 C 1.46977 * 120.00337 * 183.71470 * 14 4 2 17 17 C 1.35806 * 125.14188 * 173.36942 * 16 14 4 18 18 C 1.46244 * 106.08848 * 180.13032 * 17 16 14 19 19 C 1.39761 * 134.16712 * 179.89434 * 18 17 16 20 20 C 1.36605 * 119.75518 * 179.70186 * 19 18 17 21 21 C 1.38831 * 120.46148 * 359.96328 * 20 19 18 22 22 C 1.37976 * 120.72006 * 0.04119 * 21 20 19 23 23 F 1.35095 * 120.09424 * 180.02562 * 22 21 20 24 24 C 1.39235 * 119.81207 * 359.97438 * 22 21 20 25 25 O 1.34743 * 133.24436 * 179.97438 * 24 22 21 26 26 H 1.09000 * 109.47455 * 299.99916 * 1 2 3 27 27 H 1.09004 * 109.46949 * 60.00236 * 1 2 3 28 28 H 1.08995 * 109.47214 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46946 * 239.99970 * 2 1 3 30 30 H 1.09004 * 109.46731 * 179.97438 * 3 2 1 31 31 H 1.08990 * 109.47129 * 299.99851 * 3 2 1 32 32 H 1.09000 * 109.47044 * 59.99833 * 3 2 1 33 33 H 1.08999 * 109.46903 * 23.01998 * 5 4 2 34 34 H 1.08995 * 109.47215 * 143.01819 * 5 4 2 35 35 H 0.97006 * 120.00270 * 180.02562 * 9 8 6 36 36 H 1.08002 * 126.95467 * 359.76289 * 17 16 14 37 37 H 1.07999 * 120.12509 * 359.66227 * 19 18 17 38 38 H 1.08002 * 119.76360 * 179.97438 * 20 19 18 39 39 H 1.08002 * 119.63930 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7573 -0.1292 2.5240 6 6 2.9574 0.6598 2.9805 7 1 3.8276 0.7352 2.3452 8 6 2.9444 1.2855 4.2090 9 7 1.8850 1.1933 4.9827 10 14 4.4317 2.2641 4.7746 11 1 4.6941 3.3655 3.8139 12 1 4.1673 2.8330 6.1206 13 1 5.6164 1.3710 4.8393 14 6 2.7076 -1.8424 1.0752 15 8 2.9828 -2.2734 -0.0286 16 6 3.1267 -2.5778 2.2767 17 6 3.7094 -3.8045 2.2789 18 6 3.9461 -4.1383 3.6830 19 6 4.5028 -5.2378 4.3420 20 6 4.5871 -5.2396 5.7055 21 6 4.1243 -4.1567 6.4407 22 6 3.5711 -3.0613 5.8100 23 9 3.1253 -2.0142 6.5378 24 6 3.4747 -3.0377 4.4212 25 8 2.9958 -2.1337 3.5443 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 0.8879 0.5265 2.4767 34 1 1.5646 -0.9378 3.2289 35 1 1.8757 1.6338 5.8470 36 1 3.9444 -4.4132 1.4183 37 1 4.8645 -6.0832 3.7756 38 1 5.0170 -6.0894 6.2149 39 1 4.1979 -4.1720 7.5181 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610239601.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:30 Heat of formation + Delta-G solvation = -61.983990 kcal Electronic energy + Delta-G solvation = -25778.388599 eV Core-core repulsion = 21987.713792 eV Total energy + Delta-G solvation = -3790.674807 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.87979 -43.49584 -40.83658 -38.72658 -37.66257 -34.91710 -33.59640 -33.21627 -31.11074 -30.48052 -29.23208 -28.01841 -25.70253 -25.04621 -23.87205 -22.83025 -21.97069 -20.37875 -19.13962 -18.91014 -18.50918 -17.77194 -17.51801 -17.44732 -16.69431 -16.42211 -16.36219 -15.89349 -15.67971 -15.27215 -14.82871 -14.39726 -14.36963 -14.19203 -14.03590 -13.96273 -13.35653 -13.30796 -13.04855 -12.96835 -12.84920 -12.78797 -12.56689 -12.40651 -12.33777 -12.10669 -11.69521 -11.59605 -11.29932 -11.11948 -10.56845 -9.79783 -9.60984 -9.14108 -8.18598 -6.27757 -0.53046 0.22042 0.70615 1.32096 1.34309 1.40579 1.50197 2.07105 2.13628 2.39113 2.56419 3.11648 3.14155 3.25176 3.74684 3.82518 3.90628 4.05139 4.20849 4.23562 4.26454 4.37041 4.54079 4.60529 4.66239 4.78836 4.87143 4.94934 5.01437 5.06312 5.07098 5.21525 5.29752 5.33573 5.37127 5.44491 5.56852 5.66392 5.77874 6.05846 6.08440 6.34560 6.77117 7.01197 7.39372 8.87981 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.011835 B = 0.007275 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.365555 B = 3847.639213 C = 5544.632882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.125 3.875 3 C -0.143 4.143 4 N -0.579 5.579 5 C 0.255 3.745 6 C -0.523 4.523 7 H 0.043 0.957 8 C 0.031 3.969 9 N -0.910 5.910 10 Si 0.938 3.062 11 H -0.265 1.265 12 H -0.280 1.280 13 H -0.283 1.283 14 C 0.586 3.414 15 O -0.564 6.564 16 C -0.034 4.034 17 C -0.122 4.122 18 C -0.128 4.128 19 C -0.062 4.062 20 C -0.103 4.103 21 C -0.109 4.109 22 C 0.068 3.932 23 F -0.151 7.151 24 C -0.011 4.011 25 O -0.155 6.155 26 H 0.049 0.951 27 H 0.097 0.903 28 H 0.051 0.949 29 H 0.094 0.906 30 H 0.038 0.962 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.031 0.969 34 H 0.029 0.971 35 H 0.263 0.737 36 H 0.194 0.806 37 H 0.176 0.824 38 H 0.191 0.809 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.807 -11.968 -1.039 12.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.023 3.977 3 C -0.201 4.201 4 N -0.308 5.308 5 C 0.134 3.866 6 C -0.562 4.562 7 H 0.061 0.939 8 C -0.170 4.170 9 N -0.549 5.549 10 Si 0.764 3.236 11 H -0.190 1.190 12 H -0.205 1.205 13 H -0.209 1.209 14 C 0.374 3.626 15 O -0.448 6.448 16 C -0.084 4.084 17 C -0.143 4.143 18 C -0.129 4.129 19 C -0.080 4.080 20 C -0.120 4.120 21 C -0.128 4.128 22 C 0.048 3.952 23 F -0.130 7.130 24 C -0.061 4.061 25 O -0.055 6.055 26 H 0.069 0.931 27 H 0.116 0.884 28 H 0.071 0.929 29 H 0.112 0.888 30 H 0.058 0.942 31 H 0.110 0.890 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.211 0.789 37 H 0.193 0.807 38 H 0.208 0.792 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 2.678 -11.737 -1.334 12.112 hybrid contribution 0.439 1.369 0.772 1.632 sum 3.117 -10.368 -0.562 10.841 Atomic orbital electron populations 1.22079 0.93312 1.02117 1.03279 1.21298 0.95442 0.93802 0.87189 1.21974 1.00495 0.94877 1.02725 1.48399 1.51193 1.21151 1.10030 1.19197 0.96376 0.93628 0.77356 1.21302 1.00892 1.31709 1.02261 0.93900 1.25412 0.98016 0.97252 0.96333 1.69977 1.29746 1.44247 1.10963 0.85924 0.80440 0.79334 0.77934 1.19031 1.20495 1.20901 1.16979 0.78562 0.81229 0.85837 1.90722 1.59194 1.69917 1.24937 1.22273 1.06105 0.96601 0.83457 1.22917 1.00147 0.94549 0.96660 1.20093 1.04709 0.96146 0.91981 1.20904 0.96039 0.96052 0.95024 1.21145 0.99312 0.98601 0.92942 1.21463 0.97785 0.90870 1.02677 1.17337 1.05561 0.88408 0.83881 1.91516 1.87667 1.56771 1.77013 1.20603 1.02086 0.91505 0.91887 1.84834 1.66008 1.40509 1.14134 0.93147 0.88433 0.92939 0.88838 0.94235 0.89012 0.93018 0.95091 0.95349 0.92759 0.78933 0.80693 0.79225 0.80789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.63 9.26 71.98 0.67 -3.96 16 2 C 0.12 4.59 3.22 45.00 0.15 4.73 16 3 C -0.14 -5.03 8.66 71.98 0.62 -4.41 16 4 N -0.58 -25.91 2.38 -806.49 -1.92 -27.83 16 5 C 0.25 13.04 3.91 85.63 0.33 13.37 16 6 C -0.52 -28.90 7.44 25.60 0.19 -28.71 16 7 H 0.04 2.44 7.81 -2.91 -0.02 2.42 16 8 C 0.03 1.72 5.46 84.65 0.46 2.18 16 9 N -0.91 -53.33 13.29 21.44 0.28 -53.05 16 10 Si 0.94 45.22 29.54 68.60 2.03 47.24 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 13 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 14 C 0.59 26.46 7.58 86.53 0.66 27.12 16 15 O -0.56 -25.48 16.17 -4.19 -0.07 -25.54 16 16 C -0.03 -1.49 6.70 24.00 0.16 -1.33 16 17 C -0.12 -4.27 10.81 23.79 0.26 -4.01 16 18 C -0.13 -4.18 6.38 -20.24 -0.13 -4.31 16 19 C -0.06 -1.33 10.06 22.26 0.22 -1.11 16 20 C -0.10 -1.84 9.98 22.03 0.22 -1.62 16 21 C -0.11 -2.69 9.99 22.35 0.22 -2.47 16 22 C 0.07 2.54 7.32 22.45 0.16 2.71 16 23 F -0.15 -6.77 17.27 44.97 0.78 -5.99 16 24 C -0.01 -0.46 7.39 23.10 0.17 -0.29 16 25 O -0.15 -7.53 6.38 -13.23 -0.08 -7.62 16 26 H 0.05 1.70 6.91 -2.39 -0.02 1.68 16 27 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.09 3.38 6.91 -2.39 -0.02 3.36 16 30 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.05 2.06 7.09 -2.39 -0.02 2.04 16 33 H 0.03 1.64 6.48 -2.39 -0.02 1.63 16 34 H 0.03 1.63 5.43 -2.39 -0.01 1.61 16 35 H 0.26 14.85 8.31 -92.70 -0.77 14.08 16 36 H 0.19 5.45 8.06 -2.91 -0.02 5.42 16 37 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 38 H 0.19 1.47 8.06 -2.91 -0.02 1.44 16 39 H 0.17 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -71.63 334.23 6.47 -65.16 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 1.08 Total: 9.72 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 4.37 Total: -2.10 kcal Atomic # 7 Polarization: -79.24 SS G_CDS: -1.63 Total: -80.87 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -0.15 Total: -33.16 kcal Atomic # 9 Polarization: -6.77 SS G_CDS: 0.78 Total: -5.99 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -71.63 6.47 -65.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610239601.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.176 kcal (2) G-P(sol) polarization free energy of solvation -71.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds