Wall clock time and date at job start Tue Mar 31 2020 08:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.35837 * 126.45880 * 2 1 4 4 H 0.96994 * 124.92188 * 0.02562 * 3 2 1 5 5 N 1.28465 * 110.16321 * 179.97438 * 3 2 1 6 6 C 1.31928 * 110.21262 * 0.02562 * 5 3 2 7 7 C 1.47520 * 126.45898 * 179.97438 * 6 5 3 8 8 O 1.21593 * 119.99915 * 173.99089 * 7 6 5 9 9 N 1.34774 * 120.00419 * 353.99673 * 7 6 5 10 10 C 1.46500 * 119.99753 * 3.89700 * 9 7 6 11 11 C 1.50700 * 109.47301 * 83.38008 * 10 9 7 12 12 H 1.08008 * 119.99435 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00352 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99997 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00152 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47097 * 89.99544 * 15 13 11 17 17 H 1.48497 * 109.47178 * 209.99696 * 15 13 11 18 18 H 1.48497 * 109.46922 * 329.99561 * 15 13 11 19 19 C 1.46495 * 120.00448 * 183.90097 * 9 7 6 20 20 C 1.50698 * 109.47160 * 85.12557 * 19 9 7 21 21 C 1.34518 * 125.79252 * 89.71504 * 20 19 9 22 22 C 1.41387 * 106.84186 * 179.88943 * 21 20 19 23 23 C 1.34516 * 106.83792 * 0.37620 * 22 21 20 24 24 O 1.34300 * 108.42126 * 359.76813 * 23 22 21 25 25 C 1.35779 * 126.45824 * 179.69642 * 2 1 3 26 26 O 1.36087 * 127.26899 * 359.97438 * 25 2 1 27 27 H 1.09000 * 109.46940 * 90.02125 * 1 2 3 28 28 H 1.09001 * 109.46968 * 330.02355 * 1 2 3 29 29 H 1.08997 * 109.47036 * 210.02364 * 1 2 3 30 30 H 1.09001 * 109.47393 * 203.38394 * 10 9 7 31 31 H 1.09007 * 109.47158 * 323.37970 * 10 9 7 32 32 H 0.96999 * 119.99876 * 180.02562 * 14 13 11 33 33 H 1.09003 * 109.47545 * 205.12322 * 19 9 7 34 34 H 1.08997 * 109.47313 * 325.12827 * 19 9 7 35 35 H 1.07998 * 126.57820 * 0.03083 * 21 20 19 36 36 H 1.08000 * 126.57822 * 180.16207 * 22 21 20 37 37 H 1.08007 * 125.78266 * 179.75373 * 23 22 21 38 38 H 0.96705 * 113.99689 * 90.03105 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3142 1.0925 0.0000 4 1 2.0046 2.0117 0.0004 5 7 3.5473 0.7321 0.0005 6 6 3.6374 -0.5841 0.0004 7 6 4.8810 -1.3777 0.0003 8 8 4.8302 -2.5876 0.1104 9 7 6.0735 -0.7617 -0.1216 10 6 6.1410 0.7010 -0.1682 11 6 6.1247 1.2496 1.2353 12 1 6.0691 0.5760 2.0777 13 6 6.1796 2.6114 1.4439 14 7 6.2467 3.4316 0.4181 15 14 6.1586 3.2914 3.1836 16 1 7.5512 3.4088 3.6860 17 1 5.5177 4.6310 3.1838 18 1 5.3903 2.3750 4.0640 19 6 7.3023 -1.5547 -0.2077 20 6 7.5348 -1.9672 -1.6383 21 6 8.2278 -1.2689 -2.5557 22 6 8.1957 -2.0206 -3.7528 23 6 7.4780 -3.1293 -3.4976 24 8 7.0803 -3.0916 -2.2154 25 6 2.3139 -1.0920 0.0058 26 8 1.9326 -2.3984 0.0132 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3633 0.8902 0.5135 29 1 -0.3633 -0.8897 0.5142 30 1 7.0607 1.0066 -0.6671 31 1 5.2833 1.0870 -0.7192 32 1 6.2857 4.3896 0.5649 33 1 8.1453 -0.9575 0.1398 34 1 7.2054 -2.4437 0.4155 35 1 8.7169 -0.3177 -2.4059 36 1 8.6560 -1.7540 -4.6927 37 1 7.2587 -3.9162 -4.2042 38 1 1.8225 -2.7809 -0.8681 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610989499.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:46 Heat of formation + Delta-G solvation = 4.306664 kcal Electronic energy + Delta-G solvation = -25441.493501 eV Core-core repulsion = 21673.613235 eV Total energy + Delta-G solvation = -3767.880267 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.56774 -43.42518 -40.37545 -38.15515 -36.81368 -34.61935 -33.88456 -33.56052 -32.14548 -31.33384 -29.06312 -27.73042 -27.18014 -25.20386 -23.98440 -22.59607 -22.20533 -21.53402 -20.04537 -19.16550 -18.70921 -18.10709 -17.96576 -17.54209 -17.31539 -16.75515 -16.42063 -16.26194 -15.93633 -15.18061 -15.08857 -14.68464 -14.47991 -14.20353 -13.88319 -13.70803 -13.67802 -13.54048 -13.49143 -13.22627 -12.99297 -12.76730 -12.59688 -12.16512 -11.96522 -11.70233 -11.20728 -10.91114 -10.79479 -10.46915 -10.22158 -9.67387 -9.53034 -9.38130 -8.08604 -6.16406 0.64429 0.76647 0.99849 1.38761 1.41677 1.50314 1.67973 1.97286 2.12129 2.34405 2.50115 2.52738 3.23102 3.28260 3.75266 3.85090 3.86948 4.02242 4.16601 4.18568 4.35594 4.54484 4.55973 4.80027 4.88746 4.92050 4.94922 5.04145 5.07511 5.20529 5.24649 5.45637 5.64143 5.76335 5.85195 6.19198 6.23975 6.26325 6.49296 6.81560 6.86270 7.03314 7.29202 7.49683 8.98463 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.009575 B = 0.007047 C = 0.004570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.533185 B = 3972.536785 C = 6125.914839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.001 4.001 3 N -0.370 5.370 4 H 0.460 0.540 5 N -0.203 5.203 6 C -0.068 4.068 7 C 0.592 3.408 8 O -0.573 6.573 9 N -0.586 5.586 10 C 0.250 3.750 11 C -0.517 4.517 12 H 0.035 0.965 13 C 0.035 3.965 14 N -0.912 5.912 15 Si 0.942 3.058 16 H -0.276 1.276 17 H -0.278 1.278 18 H -0.284 1.284 19 C 0.194 3.806 20 C -0.045 4.045 21 C -0.204 4.204 22 C -0.223 4.223 23 C -0.044 4.044 24 O -0.190 6.190 25 C 0.013 3.987 26 O -0.463 6.463 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.017 0.983 31 H 0.060 0.940 32 H 0.263 0.737 33 H 0.122 0.878 34 H 0.083 0.917 35 H 0.150 0.850 36 H 0.175 0.825 37 H 0.240 0.760 38 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.348 -5.488 -7.624 11.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.127 4.127 3 N -0.090 5.090 4 H 0.307 0.693 5 N -0.041 5.041 6 C -0.228 4.228 7 C 0.380 3.620 8 O -0.453 6.453 9 N -0.316 5.316 10 C 0.129 3.871 11 C -0.556 4.556 12 H 0.054 0.946 13 C -0.164 4.164 14 N -0.552 5.552 15 Si 0.769 3.231 16 H -0.202 1.202 17 H -0.203 1.203 18 H -0.210 1.210 19 C 0.072 3.928 20 C -0.096 4.096 21 C -0.224 4.224 22 C -0.241 4.241 23 C -0.111 4.111 24 O -0.086 6.086 25 C -0.043 4.043 26 O -0.269 6.269 27 H 0.118 0.882 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.035 0.965 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.140 0.860 34 H 0.101 0.899 35 H 0.168 0.832 36 H 0.192 0.808 37 H 0.256 0.744 38 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -6.849 -5.175 -6.833 10.971 hybrid contribution -0.078 0.416 0.393 0.577 sum -6.927 -4.759 -6.440 10.588 Atomic orbital electron populations 1.20445 0.82604 1.05138 1.04847 1.22076 0.96951 0.86163 1.07481 1.43614 1.02791 1.10156 1.52434 0.69254 1.74526 1.01028 1.13222 1.15294 1.22356 0.95337 0.91048 1.14034 1.17252 0.82831 0.85906 0.75998 1.90682 1.87334 1.14175 1.53079 1.48221 1.04646 1.09429 1.69304 1.19487 0.98039 0.72600 0.96929 1.21342 1.50304 0.91744 0.92165 0.94633 1.25307 0.94899 0.96760 0.99482 1.70008 1.51094 1.03241 1.30877 0.85824 0.78226 0.77624 0.81437 1.20171 1.20294 1.20968 1.19771 0.88390 0.96431 0.88257 1.22984 1.01630 0.87486 0.97472 1.21900 1.04783 1.02062 0.93682 1.22145 1.05708 0.96068 1.00216 1.24904 1.00365 1.02377 0.83462 1.84090 1.61109 1.38770 1.24672 1.17986 0.88723 0.85765 1.11845 1.84826 1.88630 1.19451 1.34024 0.88204 0.88821 0.89279 0.96455 0.92297 0.92746 0.86010 0.89886 0.83184 0.80757 0.74378 0.74887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.18 10.44 71.24 0.74 -0.44 16 2 C 0.00 -0.02 7.27 41.37 0.30 0.28 16 3 N -0.37 -11.84 6.87 -47.26 -0.32 -12.16 16 4 H 0.46 11.23 8.96 -220.00 -1.97 9.26 16 5 N -0.20 -8.76 8.04 -48.09 -0.39 -9.15 16 6 C -0.07 -3.03 6.80 42.45 0.29 -2.74 16 7 C 0.59 28.83 7.57 86.69 0.66 29.49 16 8 O -0.57 -29.26 16.18 -2.28 -0.04 -29.29 16 9 N -0.59 -27.53 2.47 -834.29 -2.06 -29.59 16 10 C 0.25 12.67 4.74 85.63 0.41 13.08 16 11 C -0.52 -27.98 8.40 25.60 0.22 -27.76 16 12 H 0.04 2.03 7.81 -2.91 -0.02 2.00 16 13 C 0.04 1.89 5.46 84.65 0.46 2.35 16 14 N -0.91 -49.89 13.29 21.45 0.28 -49.60 16 15 Si 0.94 42.93 29.54 68.60 2.03 44.95 16 16 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 17 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 18 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 19 C 0.19 7.93 5.89 85.63 0.50 8.43 16 20 C -0.04 -1.70 6.87 24.83 0.17 -1.53 16 21 C -0.20 -6.93 10.81 22.19 0.24 -6.69 16 22 C -0.22 -6.15 10.91 22.19 0.24 -5.91 16 23 C -0.04 -1.19 12.09 66.97 0.81 -0.38 16 24 O -0.19 -7.03 10.65 -2.45 -0.03 -7.06 16 25 C 0.01 0.47 7.28 22.57 0.16 0.63 16 26 O -0.46 -15.62 13.21 -92.81 -1.23 -16.85 16 27 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.02 0.92 8.02 -2.39 -0.02 0.90 16 31 H 0.06 3.15 5.36 -2.38 -0.01 3.14 16 32 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 33 H 0.12 4.57 8.04 -2.39 -0.02 4.55 16 34 H 0.08 3.41 7.52 -2.39 -0.02 3.39 16 35 H 0.15 4.90 8.06 -2.91 -0.02 4.88 16 36 H 0.17 3.59 8.06 -2.91 -0.02 3.57 16 37 H 0.24 4.00 8.06 -2.91 -0.02 3.98 16 38 H 0.40 9.69 9.07 -74.05 -0.67 9.02 16 Total: -1.00 -76.17 337.78 1.94 -74.23 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: -1.51 Total: 25.71 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 5.20 Total: 8.81 kcal Atomic # 7 Polarization: -98.01 SS G_CDS: -2.49 Total: -100.50 kcal Atomic # 8 Polarization: -51.91 SS G_CDS: -1.29 Total: -53.20 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Total: -76.17 1.94 -74.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610989499.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.539 kcal (2) G-P(sol) polarization free energy of solvation -76.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds