Wall clock time and date at job start Tue Mar 31 2020 08:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47188 * 2 1 4 4 H 1.08999 * 109.47058 * 305.00139 * 3 2 1 5 5 C 1.50696 * 109.46920 * 185.00472 * 3 2 1 6 6 H 1.08002 * 120.00157 * 239.99968 * 5 3 2 7 7 C 1.37881 * 120.00447 * 60.00039 * 5 3 2 8 8 N 1.31510 * 119.99635 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00210 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47212 * 89.99990 * 9 7 5 11 11 H 1.48498 * 109.47421 * 210.00302 * 9 7 5 12 12 H 1.48504 * 109.47342 * 330.00327 * 9 7 5 13 13 N 1.46499 * 109.47014 * 65.00471 * 3 2 1 14 14 C 1.34777 * 119.99665 * 275.27733 * 13 3 2 15 15 O 1.21653 * 120.00225 * 359.72103 * 14 13 3 16 16 C 1.46985 * 119.99531 * 179.72425 * 14 13 3 17 17 O 1.34936 * 125.13460 * 359.69239 * 16 14 13 18 18 C 1.34762 * 110.84932 * 179.80970 * 17 16 14 19 19 C 1.40690 * 107.60157 * 0.44663 * 18 17 16 20 20 C 1.39722 * 120.09726 * 179.73622 * 19 18 17 21 21 C 1.36633 * 119.75524 * 0.02562 * 20 19 18 22 22 C 1.38798 * 120.47049 * 359.95055 * 21 20 19 23 23 C 1.38019 * 120.71056 * 0.05251 * 22 21 20 24 24 F 1.35093 * 120.09532 * 179.97438 * 23 22 21 25 25 C 1.35810 * 125.13025 * 179.97438 * 16 14 13 26 26 C 1.50698 * 126.95790 * 359.97438 * 25 16 14 27 27 H 1.08995 * 109.47136 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46778 * 299.99805 * 1 2 3 29 29 H 1.08998 * 109.47035 * 59.99571 * 1 2 3 30 30 H 1.09001 * 109.46982 * 240.00709 * 2 1 3 31 31 H 1.08993 * 109.47720 * 120.00490 * 2 1 3 32 32 H 0.97000 * 120.00295 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99790 * 94.99446 * 13 3 2 34 34 H 1.07995 * 120.12213 * 179.97438 * 20 19 18 35 35 H 1.08006 * 119.76758 * 180.02562 * 21 20 19 36 36 H 1.07994 * 119.64621 * 180.02562 * 22 21 20 37 37 H 1.08998 * 109.47107 * 90.02609 * 26 25 16 38 38 H 1.08998 * 109.47252 * 210.02789 * 26 25 16 39 39 H 1.09001 * 109.47022 * 330.02433 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6521 7 6 4.1433 0.8784 -1.2281 8 7 3.4061 0.3367 -2.1730 9 14 6.0048 0.8812 -1.3820 10 1 6.5548 -0.3502 -0.7605 11 1 6.3828 0.9225 -2.8175 12 1 6.5570 2.0737 -0.6904 13 7 1.6526 2.0975 1.2519 14 6 0.4332 2.6595 1.3689 15 8 -0.3438 2.6274 0.4334 16 6 0.0422 3.3113 2.6270 17 8 0.8168 3.4016 3.7282 18 6 0.1753 4.0609 4.7131 19 6 -1.0980 4.4137 4.2297 20 6 -1.9907 5.1088 5.0495 21 6 -1.6223 5.4449 6.3216 22 6 -0.3680 5.0997 6.8054 23 6 0.5290 4.4132 6.0124 24 9 1.7468 4.0840 6.4959 25 6 -1.1553 3.9087 2.8584 26 6 -2.3094 4.0276 1.8967 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 3.8291 -0.0611 -2.9500 33 1 2.2721 2.1230 1.9978 34 1 -2.9681 5.3802 4.6787 35 1 -2.3124 5.9818 6.9556 36 1 -0.0908 5.3717 7.8132 37 1 -2.9662 3.1650 2.0090 38 1 -2.8674 4.9393 2.1097 39 1 -1.9293 4.0644 0.8758 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613037753.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:12 Heat of formation + Delta-G solvation = -61.978050 kcal Electronic energy + Delta-G solvation = -24711.658871 eV Core-core repulsion = 20920.984322 eV Total energy + Delta-G solvation = -3790.674549 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.05952 -42.57512 -39.09722 -37.94507 -35.36400 -33.73642 -32.49273 -31.17413 -30.36354 -30.01730 -27.80469 -26.81400 -24.26688 -23.13955 -22.90770 -21.03029 -20.13384 -19.55480 -18.40364 -17.60890 -17.10304 -16.72713 -16.15393 -15.84597 -15.47791 -15.37788 -15.16615 -14.47993 -14.40444 -13.94519 -13.39268 -13.18573 -13.03821 -12.82472 -12.67982 -12.32117 -12.30080 -12.08602 -12.05764 -11.59148 -11.50314 -11.29388 -11.02904 -10.86200 -10.37584 -10.25878 -9.87852 -9.71382 -9.42465 -9.11530 -8.91983 -8.56234 -8.27269 -7.93492 -6.16758 -4.26291 0.38679 0.96646 1.75757 2.37978 3.23469 3.28554 3.30425 3.32969 3.60968 3.69808 3.88279 4.30073 4.43589 4.48809 4.64533 4.86751 4.88717 5.15034 5.22253 5.29008 5.45175 5.67297 5.76204 5.83560 5.87498 5.98998 6.12172 6.29832 6.33633 6.39141 6.41687 6.58621 6.85349 6.98157 7.12127 7.21061 7.30447 7.54876 7.65907 7.81722 8.09915 8.47713 8.64865 8.89107 9.40535 10.88644 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.018835 B = 0.003857 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.248734 B = 7258.174742 C = 8346.112081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.269 3.731 4 H 0.054 0.946 5 C -0.537 4.537 6 H 0.063 0.937 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.688 5.688 14 C 0.580 3.420 15 O -0.516 6.516 16 C -0.004 4.004 17 O -0.172 6.172 18 C 0.029 3.971 19 C -0.106 4.106 20 C -0.072 4.072 21 C -0.115 4.115 22 C -0.127 4.127 23 C 0.113 3.887 24 F -0.131 7.131 25 C -0.104 4.104 26 C -0.088 4.088 27 H 0.025 0.975 28 H 0.036 0.964 29 H 0.052 0.948 30 H 0.103 0.897 31 H 0.033 0.967 32 H 0.265 0.735 33 H 0.396 0.604 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.147 0.853 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.552 8.636 15.249 20.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.168 3.832 4 H 0.072 0.928 5 C -0.575 4.575 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.730 3.270 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.334 5.334 14 C 0.363 3.637 15 O -0.396 6.396 16 C -0.055 4.055 17 O -0.073 6.073 18 C -0.020 4.020 19 C -0.108 4.108 20 C -0.090 4.090 21 C -0.133 4.133 22 C -0.146 4.146 23 C 0.093 3.907 24 F -0.109 7.109 25 C -0.107 4.107 26 C -0.144 4.144 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.121 0.879 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.229 0.771 34 H 0.154 0.846 35 H 0.158 0.842 36 H 0.165 0.835 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.711 8.355 14.374 19.778 hybrid contribution 1.561 -0.094 0.519 1.648 sum -9.150 8.261 14.894 19.333 Atomic orbital electron populations 1.21860 0.98278 0.98359 1.01154 1.21962 0.92679 0.99495 1.02634 1.18953 0.94664 0.89348 0.80271 0.92774 1.21210 0.90441 1.39349 1.06506 0.91922 1.24866 0.98757 0.94642 0.95257 1.69881 1.35221 1.37437 1.09343 0.86427 0.84652 0.78550 0.77394 1.20477 1.21011 1.19800 1.46572 1.13600 1.54056 1.19153 1.16664 0.83819 0.79598 0.83571 1.90824 1.51816 1.59989 1.36956 1.22665 0.91076 1.04153 0.87560 1.84143 1.41300 1.62381 1.19475 1.19662 0.92845 0.99457 0.90079 1.19706 0.93994 1.02631 0.94426 1.20395 0.99036 0.96583 0.92970 1.20585 0.95817 1.01161 0.95728 1.20945 0.93651 0.99746 1.00262 1.16530 0.82827 1.02968 0.88387 1.91535 1.40835 1.90807 1.87770 1.21326 0.96236 0.99913 0.93221 1.20399 0.93785 1.01699 0.98567 0.95575 0.94449 0.92936 0.87933 0.94817 0.92466 0.77122 0.84622 0.84237 0.83501 0.90656 0.91666 0.88593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.51 37.16 0.32 -2.70 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.67 2.24 -69.08 -0.15 6.51 16 4 H 0.05 1.52 7.58 -51.93 -0.39 1.13 16 5 C -0.54 -14.12 8.73 -34.44 -0.30 -14.42 16 6 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.26 11.29 55.43 0.63 -23.64 16 9 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.69 -14.68 5.02 -56.15 -0.28 -14.96 16 14 C 0.58 11.75 6.35 -12.72 -0.08 11.67 16 15 O -0.52 -11.26 11.73 5.23 0.06 -11.20 16 16 C 0.00 -0.07 7.07 -36.91 -0.26 -0.33 16 17 O -0.17 -2.95 10.28 2.67 0.03 -2.93 16 18 C 0.03 0.43 7.39 -38.30 -0.28 0.15 16 19 C -0.11 -1.43 6.37 -105.20 -0.67 -2.10 16 20 C -0.07 -0.70 10.06 -39.61 -0.40 -1.09 16 21 C -0.11 -0.92 9.98 -39.95 -0.40 -1.32 16 22 C -0.13 -1.17 9.99 -39.45 -0.39 -1.57 16 23 C 0.11 1.44 7.32 -39.31 -0.29 1.15 16 24 F -0.13 -1.81 17.27 2.25 0.04 -1.77 16 25 C -0.10 -1.57 6.39 -102.28 -0.65 -2.23 16 26 C -0.09 -1.14 9.81 36.00 0.35 -0.79 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.04 0.79 5.63 -51.93 -0.29 0.50 16 29 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 30 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 31 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.40 7.83 8.25 -40.82 -0.34 7.49 16 34 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.14 0.65 8.06 -52.48 -0.42 0.22 16 36 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.10 1.44 6.37 -51.93 -0.33 1.10 16 LS Contribution 331.81 15.07 5.00 5.00 Total: -1.00 -29.04 331.81 -7.57 -36.62 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -4.57 Total: 5.90 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -3.45 Total: -8.57 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.34 Total: -38.59 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: 0.09 Total: -14.13 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.04 -7.57 -36.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613037753.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.362 kcal (2) G-P(sol) polarization free energy of solvation -29.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds