Wall clock time and date at job start Tue Mar 31 2020 08:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47039 * 2 1 4 4 C 1.52998 * 109.47100 * 120.00549 * 2 1 3 5 5 C 1.53503 * 114.20386 * 180.02562 * 4 2 1 6 6 N 1.47067 * 87.98322 * 220.34277 * 5 4 2 7 7 C 1.34774 * 136.05885 * 207.08279 * 6 5 4 8 8 O 1.21609 * 119.99790 * 355.43943 * 7 6 5 9 9 C 1.47430 * 120.00268 * 175.43827 * 7 6 5 10 10 C 1.39683 * 120.21358 * 25.28359 * 9 7 6 11 11 C 1.37809 * 119.93800 * 179.97438 * 10 9 7 12 12 C 1.38656 * 120.38101 * 0.02562 * 11 10 9 13 13 C 1.37910 * 120.43822 * 0.02562 * 12 11 10 14 14 C 1.39112 * 120.05229 * 359.97438 * 13 12 11 15 15 S 1.76199 * 120.19022 * 179.97438 * 14 13 12 16 16 C 1.76197 * 99.99894 * 7.69196 * 15 14 13 17 17 H 1.07995 * 120.00510 * 5.64316 * 16 15 14 18 18 C 1.38811 * 120.00012 * 185.64717 * 16 15 14 19 19 N 1.31546 * 119.99988 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 119.99902 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46851 * 90.00364 * 20 18 16 22 22 H 1.48495 * 109.46988 * 210.00309 * 20 18 16 23 23 H 1.48505 * 109.46917 * 330.00502 * 20 18 16 24 24 C 1.47068 * 87.88710 * 27.34323 * 6 5 4 25 25 H 1.09006 * 109.47369 * 59.99766 * 1 2 3 26 26 H 1.09002 * 109.47330 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47183 * 299.99851 * 1 2 3 28 28 H 1.09006 * 109.46875 * 240.00668 * 2 1 3 29 29 H 1.08998 * 109.46983 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47176 * 300.00079 * 3 2 1 31 31 H 1.08996 * 109.46808 * 60.00555 * 3 2 1 32 32 H 1.09001 * 113.28386 * 313.06430 * 4 2 1 33 33 H 1.08988 * 113.46811 * 105.56438 * 5 4 2 34 34 H 1.09004 * 113.46662 * 335.11914 * 5 4 2 35 35 H 1.08002 * 120.02782 * 359.97438 * 10 9 7 36 36 H 1.07995 * 119.80737 * 179.97438 * 11 10 9 37 37 H 1.07997 * 119.77968 * 179.72000 * 12 11 10 38 38 H 1.08004 * 119.97339 * 180.02562 * 13 12 11 39 39 H 0.97010 * 119.99878 * 179.97438 * 19 18 16 40 40 H 1.08997 * 113.47131 * 87.43434 * 24 6 5 41 41 H 1.09002 * 113.46973 * 217.88059 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5698 -0.7842 1.3591 6 7 3.4262 -2.1644 1.8462 7 6 4.1360 -2.9932 2.6372 8 8 5.2196 -2.6450 3.0654 9 6 3.5988 -4.3218 2.9833 10 6 2.6782 -4.9491 2.1406 11 6 2.1801 -6.1912 2.4694 12 6 2.5871 -6.8241 3.6340 13 6 3.4944 -6.2186 4.4778 14 6 4.0088 -4.9649 4.1636 15 16 5.1678 -4.1877 5.2394 16 6 5.4661 -5.5050 6.3709 17 1 5.0327 -6.4781 6.1932 18 6 6.2580 -5.2920 7.4908 19 7 6.4811 -6.2757 8.3353 20 14 7.0082 -3.6090 7.7980 21 1 6.0726 -2.7910 8.6109 22 1 8.2918 -3.7650 8.5281 23 1 7.2563 -2.9332 6.4991 24 6 2.1704 -2.2446 1.0849 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9562 0.8900 32 1 1.5390 -0.4050 2.1641 33 1 3.9798 -0.1017 2.1035 34 1 4.0774 -0.7140 0.3971 35 1 2.3570 -4.4610 1.2323 36 1 1.4681 -6.6741 1.8166 37 1 2.1871 -7.7955 3.8845 38 1 3.8066 -6.7186 5.3829 39 1 7.0349 -6.1269 9.1178 40 1 2.3091 -2.5593 0.0506 41 1 1.3882 -2.8062 1.5957 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753750314.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:28:41 Heat of formation + Delta-G solvation = 2.992223 kcal Electronic energy + Delta-G solvation = -22282.475057 eV Core-core repulsion = 19060.831007 eV Total energy + Delta-G solvation = -3221.644051 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.68233 -39.88420 -38.65582 -35.59241 -34.86274 -32.52553 -31.91451 -29.75321 -28.24423 -28.03658 -26.60301 -25.03356 -23.50751 -23.15743 -20.98218 -20.63179 -19.64218 -18.32401 -17.83922 -17.28604 -16.98873 -16.70015 -15.79577 -15.77104 -15.70739 -15.15852 -14.92342 -14.81906 -14.35970 -14.09088 -13.80308 -13.73493 -13.59531 -13.29127 -13.15847 -13.11133 -13.02792 -12.83135 -12.56516 -12.32334 -12.04663 -11.80611 -11.55352 -11.47830 -11.39121 -11.21860 -11.06153 -10.64590 -10.27665 -9.95208 -9.62578 -8.70991 -8.63284 -6.34581 -0.04347 0.42651 0.96286 1.18955 1.37310 1.57351 1.81433 1.87743 2.12228 2.59704 2.73003 2.89764 3.27826 3.56253 3.87363 3.91356 4.10432 4.19011 4.21314 4.39882 4.50462 4.53543 4.54843 4.57074 4.59614 4.67526 4.75222 4.83711 4.89599 4.96039 5.06166 5.13333 5.17310 5.31334 5.36104 5.37522 5.46602 5.54342 5.57429 5.62475 5.63090 6.01803 6.12046 6.69247 6.79696 7.17046 8.47845 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.017840 B = 0.004116 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.104730 B = 6801.160901 C = 8059.282825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.075 4.075 3 C -0.151 4.151 4 C -0.101 4.101 5 C 0.101 3.899 6 N -0.652 5.652 7 C 0.575 3.425 8 O -0.566 6.566 9 C -0.166 4.166 10 C -0.061 4.061 11 C -0.144 4.144 12 C -0.072 4.072 13 C -0.168 4.168 14 C -0.052 4.052 15 S -0.013 6.013 16 C -0.572 4.572 17 H 0.083 0.917 18 C 0.055 3.945 19 N -0.904 5.904 20 Si 0.905 3.095 21 H -0.255 1.255 22 H -0.250 1.250 23 H -0.245 1.245 24 C 0.097 3.903 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.098 0.902 33 H 0.057 0.943 34 H 0.100 0.900 35 H 0.163 0.837 36 H 0.172 0.828 37 H 0.150 0.850 38 H 0.115 0.885 39 H 0.281 0.719 40 H 0.117 0.883 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.975 10.706 -20.886 28.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.094 4.094 3 C -0.208 4.208 4 C -0.120 4.120 5 C -0.021 4.021 6 N -0.387 5.387 7 C 0.367 3.633 8 O -0.447 6.447 9 C -0.178 4.178 10 C -0.080 4.080 11 C -0.166 4.166 12 C -0.092 4.092 13 C -0.193 4.193 14 C -0.169 4.169 15 S 0.241 5.759 16 C -0.718 4.718 17 H 0.101 0.899 18 C -0.151 4.151 19 N -0.540 5.540 20 Si 0.726 3.274 21 H -0.179 1.179 22 H -0.173 1.173 23 H -0.170 1.170 24 C -0.024 4.024 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.106 0.894 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.116 0.884 33 H 0.076 0.924 34 H 0.118 0.882 35 H 0.180 0.820 36 H 0.190 0.810 37 H 0.168 0.832 38 H 0.132 0.868 39 H 0.090 0.910 40 H 0.134 0.866 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.509 11.877 -20.134 27.513 hybrid contribution 0.512 -1.071 1.210 1.695 sum -13.997 10.806 -18.924 25.900 Atomic orbital electron populations 1.21821 0.93993 1.02475 1.02054 1.21007 0.96553 0.96027 0.95830 1.21851 1.01018 0.95756 1.02159 1.23042 0.93546 0.94741 1.00676 1.23251 0.98001 0.81428 0.99403 1.49571 1.26264 1.15875 1.46951 1.18026 0.83135 0.84099 0.78078 1.90786 1.22305 1.76167 1.55411 1.19473 1.04993 0.96089 0.97232 1.21637 0.92732 0.95421 0.98230 1.21417 1.02396 0.95169 0.97625 1.21557 0.94070 0.99989 0.93594 1.21467 1.00617 0.95126 1.02047 1.22422 0.98783 0.98111 0.97559 1.83765 1.47164 1.19676 1.25273 1.23337 1.37673 0.99417 1.11409 0.89937 1.25542 0.94891 1.00713 0.93999 1.69966 1.37445 1.33655 1.12974 0.86049 0.80136 0.80203 0.81014 1.17921 1.17334 1.16959 1.23612 0.84465 0.97024 0.97275 0.91809 0.91812 0.93065 0.89365 0.92890 0.91584 0.93036 0.88355 0.92407 0.88203 0.81995 0.81036 0.83183 0.86781 0.90962 0.86566 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.19 71.98 0.66 -0.44 16 2 C -0.08 -0.66 2.74 -10.79 -0.03 -0.69 16 3 C -0.15 -1.44 9.00 71.98 0.65 -0.80 16 4 C -0.10 -1.41 3.49 -10.37 -0.04 -1.45 16 5 C 0.10 2.11 7.26 83.19 0.60 2.72 16 6 N -0.65 -18.01 3.68 -861.60 -3.17 -21.18 16 7 C 0.57 22.91 7.68 86.66 0.67 23.58 16 8 O -0.57 -28.22 15.17 -4.06 -0.06 -28.28 16 9 C -0.17 -6.47 5.86 -19.95 -0.12 -6.59 16 10 C -0.06 -1.65 8.74 22.52 0.20 -1.45 16 11 C -0.14 -3.52 10.02 22.27 0.22 -3.29 16 12 C -0.07 -2.23 10.03 22.29 0.22 -2.01 16 13 C -0.17 -7.30 9.21 22.40 0.21 -7.09 16 14 C -0.05 -2.47 6.13 23.04 0.14 -2.33 16 15 S -0.01 -0.74 16.88 -56.49 -0.95 -1.70 16 16 C -0.57 -35.09 9.53 67.96 0.65 -34.44 16 17 H 0.08 5.29 5.24 -2.91 -0.02 5.27 16 18 C 0.06 3.35 5.50 84.87 0.47 3.82 16 19 N -0.90 -55.97 13.96 21.65 0.30 -55.67 16 20 Si 0.90 46.19 27.74 68.60 1.90 48.09 16 21 H -0.25 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.25 -11.77 7.11 99.48 0.71 -11.07 16 23 H -0.25 -12.89 6.74 99.48 0.67 -12.22 16 24 C 0.10 1.50 5.79 83.27 0.48 1.98 16 25 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 26 H 0.06 0.41 8.14 -2.39 -0.02 0.40 16 27 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.09 0.59 7.89 -2.38 -0.02 0.57 16 29 H 0.05 0.56 7.48 -2.39 -0.02 0.54 16 30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.10 1.70 8.10 -2.38 -0.02 1.68 16 35 H 0.16 2.97 5.38 -2.91 -0.02 2.96 16 36 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 37 H 0.15 3.67 8.06 -2.91 -0.02 3.64 16 38 H 0.11 5.68 5.06 -2.91 -0.01 5.67 16 39 H 0.28 15.94 8.31 -92.70 -0.77 15.17 16 40 H 0.12 1.11 7.92 -2.39 -0.02 1.09 16 41 H 0.09 1.28 7.08 -2.39 -0.02 1.27 16 Total: -1.00 -80.81 344.12 4.00 -76.81 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.99 Total: 10.41 kcal Atomic # 6 Polarization: -33.47 SS G_CDS: 4.98 Total: -28.49 kcal Atomic # 7 Polarization: -73.98 SS G_CDS: -2.86 Total: -76.85 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.06 Total: -28.28 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.90 Total: 48.09 kcal Atomic # 16 Polarization: -0.74 SS G_CDS: -0.95 Total: -1.70 kcal Total: -80.81 4.00 -76.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753750314.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.807 kcal (2) G-P(sol) polarization free energy of solvation -80.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds