Wall clock time and date at job start Tue Mar 31 2020 08:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38285 * 119.93050 * 2 1 4 4 C 1.38112 * 120.07537 * 179.97438 * 3 2 1 5 5 C 1.38875 * 119.92633 * 359.97438 * 4 3 2 6 6 N 1.39920 * 120.07221 * 179.97438 * 5 4 3 7 7 C 1.46503 * 120.00232 * 235.73019 * 6 5 4 8 8 C 1.50696 * 109.47255 * 89.99719 * 7 6 5 9 9 H 1.08003 * 120.00167 * 0.02562 * 8 7 6 10 10 C 1.37880 * 120.00060 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99719 * 359.72398 * 10 8 7 12 12 Si 1.86798 * 120.00424 * 179.97438 * 10 8 7 13 13 H 1.48490 * 109.47308 * 179.72322 * 12 10 8 14 14 H 1.48499 * 109.46854 * 299.72874 * 12 10 8 15 15 H 1.48504 * 109.46686 * 59.72058 * 12 10 8 16 16 C 1.34778 * 119.99833 * 55.72266 * 6 5 4 17 17 O 1.21289 * 120.00157 * 5.56645 * 16 6 5 18 18 C 1.50699 * 120.00021 * 185.56279 * 16 6 5 19 19 H 1.09005 * 108.85306 * 302.87735 * 18 16 6 20 20 C 1.52941 * 108.88922 * 184.43693 * 18 16 6 21 21 C 1.55149 * 108.96374 * 209.10277 * 20 18 16 22 22 S 1.83990 * 100.90662 * 41.44184 * 21 20 18 23 23 C 1.53706 * 108.88915 * 61.45804 * 18 16 6 24 24 C 1.38875 * 119.86094 * 0.25345 * 5 4 3 25 25 C 1.38117 * 119.92535 * 359.50820 * 24 5 4 26 26 H 1.08998 * 109.47141 * 89.99572 * 1 2 3 27 27 H 1.09003 * 109.46576 * 209.99842 * 1 2 3 28 28 H 1.08994 * 109.47026 * 329.99572 * 1 2 3 29 29 H 1.08006 * 119.96060 * 359.97438 * 3 2 1 30 30 H 1.07988 * 120.03990 * 180.02562 * 4 3 2 31 31 H 1.08995 * 109.46717 * 329.99382 * 7 6 5 32 32 H 1.08998 * 109.46968 * 210.00002 * 7 6 5 33 33 H 0.97000 * 119.99824 * 0.27212 * 11 10 8 34 34 H 1.08997 * 109.60214 * 329.03750 * 20 18 16 35 35 H 1.09004 * 109.60281 * 89.17426 * 20 18 16 36 36 H 1.09000 * 111.13543 * 283.53320 * 21 20 18 37 37 H 1.08998 * 111.13276 * 159.34919 * 21 20 18 38 38 H 1.09004 * 110.34261 * 242.49339 * 23 18 16 39 39 H 1.08998 * 110.34031 * 4.63646 * 23 18 16 40 40 H 1.07995 * 120.03995 * 179.74905 * 24 5 4 41 41 H 1.07997 * 119.96377 * 180.23651 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5781 1.2019 0.0005 5 6 4.2740 0.0001 0.0016 6 7 5.6732 0.0001 0.0016 7 6 6.4057 -0.7153 -1.0462 8 6 6.6569 0.2128 -2.2066 9 1 6.3063 1.2336 -2.1674 10 6 7.3342 -0.2412 -3.3184 11 7 7.7659 -1.4827 -3.3639 12 14 7.6450 0.9089 -4.7572 13 1 8.3929 0.1856 -5.8166 14 1 6.3470 1.3816 -5.3022 15 1 8.4420 2.0741 -4.2962 16 6 6.3470 0.6583 0.9655 17 8 5.7449 1.1651 1.8884 18 6 7.8487 0.7645 0.8968 19 1 8.2713 -0.2394 0.8551 20 6 8.3544 1.4592 2.1620 21 6 9.6667 2.2176 1.8305 22 16 9.2472 2.9388 0.1906 23 6 8.2359 1.5210 -0.3840 24 6 3.5782 -1.2018 -0.0032 25 6 2.1970 -1.1984 0.0013 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3632 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.6552 2.1328 -0.0004 30 1 4.1163 2.1381 0.0010 31 1 5.8167 -1.5680 -1.3838 32 1 7.3581 -1.0662 -0.6488 33 1 7.6042 -2.0801 -2.6170 34 1 7.6035 2.1653 2.5165 35 1 8.5472 0.7156 2.9353 36 1 10.5091 1.5303 1.7536 37 1 9.8650 2.9989 2.5642 38 1 8.8226 0.8786 -1.0408 39 1 7.3432 1.8746 -0.8998 40 1 4.1164 -2.1381 -0.0065 41 1 1.6553 -2.1327 0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762134095.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:13 Heat of formation + Delta-G solvation = -16.520103 kcal Electronic energy + Delta-G solvation = -23351.284160 eV Core-core repulsion = 20128.793992 eV Total energy + Delta-G solvation = -3222.490169 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.34866 -38.53162 -35.61325 -35.22401 -33.14783 -31.54807 -30.64850 -29.42550 -27.20198 -26.23535 -24.86489 -23.41646 -22.24105 -22.12857 -20.46538 -18.76084 -17.33954 -17.03552 -16.56769 -16.09962 -15.40736 -15.06283 -14.69387 -14.43017 -13.87084 -13.78936 -13.57497 -13.32718 -13.22502 -13.12027 -12.79359 -12.37459 -12.15406 -12.05052 -11.90512 -11.61817 -11.55128 -11.32433 -11.20421 -10.90650 -10.82657 -10.78172 -10.45429 -10.22147 -9.72735 -9.59354 -9.27059 -8.66466 -8.63252 -8.59011 -7.55431 -7.32359 -6.64161 -4.40023 1.61164 1.74768 2.21545 2.69494 3.06096 3.32777 3.34814 3.48902 3.52923 4.08629 4.33268 4.75461 4.94361 5.05052 5.08015 5.09745 5.13018 5.29646 5.33108 5.39768 5.49238 5.51084 5.66995 5.71309 5.73962 5.82114 5.91964 5.97919 6.02727 6.16706 6.31735 6.36074 6.43832 6.58225 6.63093 6.67559 6.85147 6.86501 7.07241 7.47019 7.64457 7.84677 8.16581 8.49117 8.64773 9.26309 10.70907 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.011043 B = 0.006297 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.879066 B = 4445.704644 C = 6105.868537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.108 4.108 3 C -0.108 4.108 4 C -0.107 4.107 5 C 0.172 3.828 6 N -0.552 5.552 7 C 0.225 3.775 8 C -0.615 4.615 9 H 0.060 0.940 10 C 0.031 3.969 11 N -0.897 5.897 12 Si 1.058 2.942 13 H -0.279 1.279 14 H -0.285 1.285 15 H -0.281 1.281 16 C 0.527 3.473 17 O -0.547 6.547 18 C -0.107 4.107 19 H 0.100 0.900 20 C -0.113 4.113 21 C -0.064 4.064 22 S -0.331 6.331 23 C -0.031 4.031 24 C -0.127 4.127 25 C -0.109 4.109 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.032 0.968 32 H 0.032 0.968 33 H 0.269 0.731 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.741 1.779 7.622 9.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.109 4.109 3 C -0.127 4.127 4 C -0.126 4.126 5 C 0.080 3.920 6 N -0.277 5.277 7 C 0.106 3.894 8 C -0.653 4.653 9 H 0.078 0.922 10 C -0.175 4.175 11 N -0.532 5.532 12 Si 0.885 3.115 13 H -0.204 1.204 14 H -0.212 1.212 15 H -0.207 1.207 16 C 0.315 3.685 17 O -0.425 6.425 18 C -0.130 4.130 19 H 0.118 0.882 20 C -0.153 4.153 21 C -0.212 4.212 22 S -0.105 6.105 23 C -0.179 4.179 24 C -0.147 4.147 25 C -0.127 4.127 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.120 0.880 38 H 0.128 0.872 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.994 3.169 6.060 7.919 hybrid contribution -0.859 -1.334 1.772 2.378 sum -4.853 1.835 7.832 9.394 Atomic orbital electron populations 1.20709 0.91551 1.02227 1.01918 1.19790 0.95741 0.93178 1.02171 1.20798 0.93471 0.97359 1.01047 1.21075 0.94078 0.97385 1.00105 1.17595 0.83150 0.93199 0.98090 1.45759 1.03498 1.51084 1.27356 1.19710 0.91390 0.92923 0.85362 1.22220 1.41473 0.99030 1.02606 0.92155 1.25729 0.93211 0.98371 1.00205 1.70853 1.42983 1.05228 1.34087 0.83660 0.76932 0.75029 0.75840 1.20440 1.21167 1.20710 1.20400 0.89659 0.77312 0.81098 1.90635 1.70295 1.47601 1.33995 1.21748 0.93280 1.02479 0.95445 0.88242 1.22317 0.96219 1.00355 0.96375 1.24242 0.99889 1.01562 0.95524 1.87797 1.68388 1.32752 1.21552 1.24539 1.02356 0.94154 0.96812 1.21048 0.94245 0.97157 1.02283 1.20754 0.93360 0.97343 1.01273 0.91547 0.91947 0.91929 0.86264 0.86290 0.94991 0.95062 0.92093 0.88653 0.90375 0.89456 0.87979 0.87182 0.85747 0.86130 0.86224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 10.01 36.01 0.36 -0.80 16 2 C -0.11 -1.59 5.88 -104.59 -0.62 -2.20 16 3 C -0.11 -1.72 9.69 -39.61 -0.38 -2.11 16 4 C -0.11 -2.02 8.91 -39.39 -0.35 -2.37 16 5 C 0.17 3.42 5.20 -83.69 -0.44 2.99 16 6 N -0.55 -11.35 2.54 -114.74 -0.29 -11.64 16 7 C 0.23 4.95 3.97 -5.19 -0.02 4.93 16 8 C -0.61 -14.80 6.12 -34.44 -0.21 -15.01 16 9 H 0.06 1.51 6.49 -52.48 -0.34 1.17 16 10 C 0.03 0.79 5.46 -17.82 -0.10 0.69 16 11 N -0.90 -23.96 13.65 55.43 0.76 -23.21 16 12 Si 1.06 23.29 29.90 -169.99 -5.08 18.21 16 13 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 14 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 15 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 16 C 0.53 10.56 6.49 -10.99 -0.07 10.49 16 17 O -0.55 -11.87 14.65 5.55 0.08 -11.79 16 18 C -0.11 -1.87 2.26 -91.43 -0.21 -2.08 16 19 H 0.10 1.66 7.06 -51.93 -0.37 1.29 16 20 C -0.11 -1.70 5.56 -25.62 -0.14 -1.84 16 21 C -0.06 -0.87 7.52 38.29 0.29 -0.58 16 22 S -0.33 -5.81 23.23 -107.50 -2.50 -8.31 16 23 C -0.03 -0.60 4.77 37.52 0.18 -0.42 16 24 C -0.13 -2.27 9.30 -39.39 -0.37 -2.64 16 25 C -0.11 -1.66 9.69 -39.61 -0.38 -2.04 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 28 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 29 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 30 H 0.12 2.32 8.01 -52.49 -0.42 1.90 16 31 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 32 H 0.03 0.68 6.18 -51.93 -0.32 0.36 16 33 H 0.27 7.04 7.22 -40.82 -0.29 6.74 16 34 H 0.09 1.59 6.86 -51.93 -0.36 1.23 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.11 2.25 7.57 -51.93 -0.39 1.86 16 39 H 0.12 2.67 4.97 -51.93 -0.26 2.41 16 40 H 0.12 2.04 7.75 -52.49 -0.41 1.64 16 41 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 340.19 15.07 5.13 5.13 Total: -1.00 -27.92 340.19 -10.06 -37.99 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -5.70 Total: 6.63 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -2.46 Total: -13.00 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: 0.47 Total: -34.85 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.08 Total: -11.79 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -5.08 Total: 18.21 kcal Atomic # 16 Polarization: -5.81 SS G_CDS: -2.50 Total: -8.31 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.92 -10.06 -37.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762134095.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.465 kcal (2) G-P(sol) polarization free energy of solvation -27.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds