Wall clock time and date at job start Tue Mar 31 2020 08:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38285 * 119.93050 * 2 1 4 4 C 1.38112 * 120.07537 * 179.97438 * 3 2 1 5 5 C 1.38875 * 119.92633 * 359.97438 * 4 3 2 6 6 N 1.39920 * 120.07221 * 179.97438 * 5 4 3 7 7 C 1.46503 * 120.00232 * 235.73019 * 6 5 4 8 8 C 1.50696 * 109.47255 * 89.99719 * 7 6 5 9 9 H 1.08003 * 120.00167 * 0.02562 * 8 7 6 10 10 C 1.37880 * 120.00060 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99719 * 359.72398 * 10 8 7 12 12 Si 1.86798 * 120.00424 * 179.97438 * 10 8 7 13 13 H 1.48490 * 109.47308 * 179.72322 * 12 10 8 14 14 H 1.48499 * 109.46854 * 299.72874 * 12 10 8 15 15 H 1.48504 * 109.46686 * 59.72058 * 12 10 8 16 16 C 1.34778 * 119.99833 * 55.72266 * 6 5 4 17 17 O 1.21289 * 120.00157 * 5.56645 * 16 6 5 18 18 C 1.50699 * 120.00021 * 185.56279 * 16 6 5 19 19 H 1.09005 * 108.85306 * 302.87735 * 18 16 6 20 20 C 1.52941 * 108.88922 * 184.43693 * 18 16 6 21 21 C 1.55149 * 108.96374 * 209.10277 * 20 18 16 22 22 S 1.83990 * 100.90662 * 41.44184 * 21 20 18 23 23 C 1.53706 * 108.88915 * 61.45804 * 18 16 6 24 24 C 1.38875 * 119.86094 * 0.25345 * 5 4 3 25 25 C 1.38117 * 119.92535 * 359.50820 * 24 5 4 26 26 H 1.08998 * 109.47141 * 89.99572 * 1 2 3 27 27 H 1.09003 * 109.46576 * 209.99842 * 1 2 3 28 28 H 1.08994 * 109.47026 * 329.99572 * 1 2 3 29 29 H 1.08006 * 119.96060 * 359.97438 * 3 2 1 30 30 H 1.07988 * 120.03990 * 180.02562 * 4 3 2 31 31 H 1.08995 * 109.46717 * 329.99382 * 7 6 5 32 32 H 1.08998 * 109.46968 * 210.00002 * 7 6 5 33 33 H 0.97000 * 119.99824 * 0.27212 * 11 10 8 34 34 H 1.08997 * 109.60214 * 329.03750 * 20 18 16 35 35 H 1.09004 * 109.60281 * 89.17426 * 20 18 16 36 36 H 1.09000 * 111.13543 * 283.53320 * 21 20 18 37 37 H 1.08998 * 111.13276 * 159.34919 * 21 20 18 38 38 H 1.09004 * 110.34261 * 242.49339 * 23 18 16 39 39 H 1.08998 * 110.34031 * 4.63646 * 23 18 16 40 40 H 1.07995 * 120.03995 * 179.74905 * 24 5 4 41 41 H 1.07997 * 119.96377 * 180.23651 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5781 1.2019 0.0005 5 6 4.2740 0.0001 0.0016 6 7 5.6732 0.0001 0.0016 7 6 6.4057 -0.7153 -1.0462 8 6 6.6569 0.2128 -2.2066 9 1 6.3063 1.2336 -2.1674 10 6 7.3342 -0.2412 -3.3184 11 7 7.7659 -1.4827 -3.3639 12 14 7.6450 0.9089 -4.7572 13 1 8.3929 0.1856 -5.8166 14 1 6.3470 1.3816 -5.3022 15 1 8.4420 2.0741 -4.2962 16 6 6.3470 0.6583 0.9655 17 8 5.7449 1.1651 1.8884 18 6 7.8487 0.7645 0.8968 19 1 8.2713 -0.2394 0.8551 20 6 8.3544 1.4592 2.1620 21 6 9.6667 2.2176 1.8305 22 16 9.2472 2.9388 0.1906 23 6 8.2359 1.5210 -0.3840 24 6 3.5782 -1.2018 -0.0032 25 6 2.1970 -1.1984 0.0013 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3632 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.6552 2.1328 -0.0004 30 1 4.1163 2.1381 0.0010 31 1 5.8167 -1.5680 -1.3838 32 1 7.3581 -1.0662 -0.6488 33 1 7.6042 -2.0801 -2.6170 34 1 7.6035 2.1653 2.5165 35 1 8.5472 0.7156 2.9353 36 1 10.5091 1.5303 1.7536 37 1 9.8650 2.9989 2.5642 38 1 8.8226 0.8786 -1.0408 39 1 7.3432 1.8746 -0.8998 40 1 4.1164 -2.1381 -0.0065 41 1 1.6553 -2.1327 0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762134095.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:12 Heat of formation + Delta-G solvation = -29.257211 kcal Electronic energy + Delta-G solvation = -23351.836483 eV Core-core repulsion = 20128.793992 eV Total energy + Delta-G solvation = -3223.042491 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.87138 -39.87773 -37.24300 -36.61659 -34.94015 -32.86197 -31.96372 -30.73251 -28.94982 -27.55234 -26.20517 -25.23163 -23.61994 -23.44766 -21.77605 -20.31918 -19.04046 -18.60048 -18.19192 -17.49530 -16.86783 -16.38868 -16.07333 -15.81872 -15.67174 -15.12631 -14.85457 -14.67243 -14.57761 -14.47804 -14.37871 -13.93527 -13.70160 -13.29867 -13.09909 -13.06714 -12.85815 -12.71133 -12.57049 -12.51575 -12.37698 -12.08241 -12.00059 -11.81083 -11.37652 -11.11336 -10.82449 -10.58137 -10.23384 -9.92498 -9.05989 -8.75143 -8.62802 -6.40436 0.27012 0.41855 0.87928 1.29122 1.50710 1.55193 1.56020 1.74629 1.98459 2.49315 2.75843 3.11014 3.34464 3.57538 3.77070 3.88372 3.99337 3.99894 4.03096 4.08894 4.25941 4.38263 4.43730 4.46977 4.58150 4.64663 4.71592 4.75874 4.78823 4.83362 4.88945 5.04737 5.07661 5.10281 5.15094 5.35177 5.43607 5.63055 5.66038 5.74661 6.00753 6.10759 6.36321 6.50896 7.04853 7.30553 8.70277 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.011043 B = 0.006297 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.879066 B = 4445.704644 C = 6105.868537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.101 4.101 3 C -0.111 4.111 4 C -0.129 4.129 5 C 0.130 3.870 6 N -0.553 5.553 7 C 0.239 3.761 8 C -0.604 4.604 9 H 0.046 0.954 10 C -0.005 4.005 11 N -0.922 5.922 12 Si 1.092 2.908 13 H -0.280 1.280 14 H -0.278 1.278 15 H -0.274 1.274 16 C 0.522 3.478 17 O -0.567 6.567 18 C -0.104 4.104 19 H 0.108 0.892 20 C -0.108 4.108 21 C -0.043 4.043 22 S -0.363 6.363 23 C -0.021 4.021 24 C -0.142 4.142 25 C -0.106 4.106 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.145 0.855 30 H 0.099 0.901 31 H 0.019 0.981 32 H 0.034 0.966 33 H 0.263 0.737 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.130 0.870 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.121 0.879 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.768 1.827 8.669 10.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.101 4.101 3 C -0.129 4.129 4 C -0.149 4.149 5 C 0.039 3.961 6 N -0.278 5.278 7 C 0.119 3.881 8 C -0.642 4.642 9 H 0.064 0.936 10 C -0.206 4.206 11 N -0.559 5.559 12 Si 0.915 3.085 13 H -0.206 1.206 14 H -0.204 1.204 15 H -0.199 1.199 16 C 0.311 3.689 17 O -0.447 6.447 18 C -0.126 4.126 19 H 0.126 0.874 20 C -0.147 4.147 21 C -0.190 4.190 22 S -0.137 6.137 23 C -0.169 4.169 24 C -0.162 4.162 25 C -0.125 4.125 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.163 0.837 30 H 0.117 0.883 31 H 0.037 0.963 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.148 0.852 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.139 0.861 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.039 3.222 7.116 9.296 hybrid contribution -0.648 -1.326 1.523 2.121 sum -5.687 1.895 8.640 10.516 Atomic orbital electron populations 1.20795 0.88146 1.03954 1.03239 1.20302 0.98102 0.92200 0.99497 1.21142 0.92311 0.99343 1.00100 1.21105 0.95595 0.96312 1.01921 1.17965 0.82917 0.94475 1.00722 1.45714 1.04159 1.50971 1.26948 1.19405 0.91295 0.92112 0.85295 1.22280 1.40299 0.98511 1.03124 0.93616 1.26632 0.93125 0.98737 1.02132 1.70930 1.44767 1.05915 1.34240 0.83210 0.77200 0.74064 0.73979 1.20565 1.20380 1.19896 1.20823 0.90654 0.76773 0.80619 1.90605 1.70996 1.48405 1.34674 1.21832 0.91610 1.03133 0.96075 0.87366 1.22278 0.96358 1.00598 0.95444 1.24418 0.99673 1.02215 0.92731 1.87857 1.68113 1.32648 1.25116 1.24123 1.01077 0.94475 0.97213 1.21233 0.95666 0.96412 1.02909 1.21181 0.92375 0.99226 0.99678 0.90220 0.90074 0.90482 0.83716 0.88294 0.96284 0.94860 0.92765 0.90326 0.87593 0.87129 0.85174 0.89056 0.88746 0.86135 0.82916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.85 10.01 71.24 0.71 -1.13 16 2 C -0.10 -2.71 5.88 -19.84 -0.12 -2.82 16 3 C -0.11 -3.42 9.69 22.25 0.22 -3.20 16 4 C -0.13 -5.04 8.91 22.39 0.20 -4.84 16 5 C 0.13 5.37 5.20 38.16 0.20 5.57 16 6 N -0.55 -23.67 2.54 -635.31 -1.61 -25.28 16 7 C 0.24 10.92 3.97 85.63 0.34 11.26 16 8 C -0.60 -30.13 6.12 25.60 0.16 -29.97 16 9 H 0.05 2.40 6.49 -2.91 -0.02 2.38 16 10 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 11 N -0.92 -50.30 13.65 21.45 0.29 -50.00 16 12 Si 1.09 47.71 29.90 68.60 2.05 49.76 16 13 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 14 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 15 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 16 C 0.52 21.53 6.49 87.66 0.57 22.10 16 17 O -0.57 -25.22 14.65 -3.06 -0.04 -25.26 16 18 C -0.10 -3.66 2.26 -11.32 -0.03 -3.68 16 19 H 0.11 3.60 7.06 -2.38 -0.02 3.58 16 20 C -0.11 -3.06 5.56 31.31 0.17 -2.88 16 21 C -0.04 -1.06 7.52 72.72 0.55 -0.51 16 22 S -0.36 -12.62 23.23 -56.49 -1.31 -13.93 16 23 C -0.02 -0.83 4.77 72.22 0.34 -0.48 16 24 C -0.14 -5.11 9.30 22.39 0.21 -4.90 16 25 C -0.11 -3.05 9.69 22.25 0.22 -2.84 16 26 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.08 1.17 8.08 -2.39 -0.02 1.15 16 28 H 0.08 1.17 8.08 -2.39 -0.02 1.15 16 29 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 30 H 0.10 4.12 8.01 -2.92 -0.02 4.09 16 31 H 0.02 0.92 7.13 -2.39 -0.02 0.91 16 32 H 0.03 1.51 6.18 -2.39 -0.01 1.49 16 33 H 0.26 14.16 7.22 -92.71 -0.67 13.49 16 34 H 0.08 2.55 6.86 -2.39 -0.02 2.53 16 35 H 0.11 2.46 8.14 -2.38 -0.02 2.44 16 36 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.09 3.87 7.57 -2.39 -0.02 3.85 16 39 H 0.09 4.27 4.97 -2.39 -0.01 4.25 16 40 H 0.12 4.18 7.75 -2.91 -0.02 4.15 16 41 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -62.55 340.19 4.70 -57.84 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 1.13 Total: 24.99 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: 4.20 Total: -18.12 kcal Atomic # 7 Polarization: -73.97 SS G_CDS: -1.32 Total: -75.29 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.04 Total: -25.26 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.05 Total: 49.76 kcal Atomic # 16 Polarization: -12.62 SS G_CDS: -1.31 Total: -13.93 kcal Total: -62.55 4.70 -57.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762134095.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.587 kcal (2) G-P(sol) polarization free energy of solvation -62.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds