Wall clock time and date at job start Tue Mar 31 2020 08:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38294 * 119.92796 * 2 1 4 4 C 1.38116 * 120.06697 * 179.97438 * 3 2 1 5 5 C 1.38863 * 119.93133 * 0.02562 * 4 3 2 6 6 N 1.39923 * 120.07154 * 179.72562 * 5 4 3 7 7 C 1.46503 * 119.99794 * 353.37205 * 6 5 4 8 8 C 1.50699 * 109.47299 * 85.67578 * 7 6 5 9 9 H 1.07999 * 119.99805 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99533 * 180.02562 * 8 7 6 11 11 N 1.31522 * 119.99180 * 179.97438 * 10 8 7 12 12 Si 1.86794 * 120.00337 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.47154 * 90.00485 * 12 10 8 14 14 H 1.48503 * 109.47125 * 209.99908 * 12 10 8 15 15 H 1.48494 * 109.47386 * 329.99924 * 12 10 8 16 16 C 1.34781 * 120.00234 * 173.36760 * 6 5 4 17 17 O 1.21281 * 119.99913 * 4.67145 * 16 6 5 18 18 C 1.50705 * 119.99589 * 184.67113 * 16 6 5 19 19 H 1.08994 * 109.60720 * 30.56070 * 18 16 6 20 20 C 1.53862 * 109.60396 * 150.72353 * 18 16 6 21 21 C 1.55140 * 106.89726 * 167.17491 * 20 18 16 22 22 S 1.83469 * 102.20179 * 317.88085 * 21 20 18 23 23 C 1.54274 * 109.60973 * 270.21849 * 18 16 6 24 24 C 1.38871 * 119.86076 * 0.02562 * 5 4 3 25 25 C 1.38108 * 119.93120 * 359.95583 * 24 5 4 26 26 H 1.09000 * 109.46382 * 90.00310 * 1 2 3 27 27 H 1.08992 * 109.47012 * 209.99810 * 1 2 3 28 28 H 1.08998 * 109.47132 * 330.00923 * 1 2 3 29 29 H 1.07990 * 119.96285 * 359.97438 * 3 2 1 30 30 H 1.07998 * 120.02745 * 180.02562 * 4 3 2 31 31 H 1.09000 * 109.47245 * 205.67852 * 7 6 5 32 32 H 1.09006 * 109.46871 * 325.67255 * 7 6 5 33 33 H 0.97006 * 119.99511 * 179.97438 * 11 10 8 34 34 H 1.09004 * 109.97307 * 286.53201 * 20 18 16 35 35 H 1.08993 * 109.97836 * 47.80927 * 20 18 16 36 36 H 1.08995 * 110.85301 * 199.70356 * 21 20 18 37 37 H 1.08998 * 110.85820 * 76.05530 * 21 20 18 38 38 H 1.09005 * 110.40047 * 330.92383 * 23 18 16 39 39 H 1.08998 * 110.40267 * 93.33828 * 23 18 16 40 40 H 1.08007 * 120.03863 * 179.97438 * 24 5 4 41 41 H 1.08004 * 119.96993 * 180.02562 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1985 0.0000 4 6 3.5781 1.2019 0.0005 5 6 4.2739 0.0001 0.0005 6 7 5.6731 0.0001 -0.0047 7 6 6.4051 1.2601 -0.1567 8 6 6.5685 1.9119 1.1922 9 1 6.1670 1.4355 2.0743 10 6 7.2298 3.1170 1.2998 11 7 7.3720 3.6860 2.4770 12 14 7.9237 3.9412 -0.2261 13 1 6.8977 4.8400 -0.8131 14 1 9.1240 4.7343 0.1421 15 1 8.3011 2.9048 -1.2203 16 6 6.3476 -1.1590 0.1301 17 8 5.7443 -2.2104 0.1708 18 6 7.8512 -1.1485 0.2302 19 1 8.1797 -0.2244 0.7057 20 6 8.3213 -2.3510 1.0672 21 6 9.8541 -2.4726 0.8606 22 16 10.0273 -2.1748 -0.9414 23 6 8.4649 -1.2511 -1.1815 24 6 3.5781 -1.2017 -0.0005 25 6 2.1970 -1.1984 -0.0007 26 1 -0.3632 -0.0001 -1.0277 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3633 0.8901 0.5137 29 1 1.6552 2.1327 -0.0004 30 1 4.1163 2.1382 0.0010 31 1 7.3872 1.0603 -0.5851 32 1 5.8492 1.9258 -0.8170 33 1 7.8376 4.5337 2.5528 34 1 8.0999 -2.1806 2.1208 35 1 7.8261 -3.2595 0.7245 36 1 10.2031 -3.4709 1.1243 37 1 10.3843 -1.7111 1.4325 38 1 7.7978 -1.7992 -1.8469 39 1 8.6685 -0.2573 -1.5804 40 1 4.1164 -2.1381 -0.0010 41 1 1.6552 -2.1327 -0.0011 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762134097.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:14 Heat of formation + Delta-G solvation = -2.156609 kcal Electronic energy + Delta-G solvation = -23159.575473 eV Core-core repulsion = 19937.708153 eV Total energy + Delta-G solvation = -3221.867321 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.57447 -38.37574 -35.71004 -35.45623 -32.83517 -31.59134 -30.43341 -29.65721 -28.30961 -26.39668 -24.95532 -23.25814 -22.19427 -21.78969 -20.45487 -18.88967 -17.25276 -17.21227 -16.66590 -16.40558 -15.51017 -15.00347 -14.78013 -14.41451 -14.05798 -13.93506 -13.57142 -13.40267 -13.36472 -13.00523 -12.68079 -12.55280 -12.14547 -12.08204 -12.01362 -11.96801 -11.82590 -11.47781 -11.38588 -11.14663 -10.89809 -10.69935 -10.60473 -10.44387 -10.00237 -9.86278 -9.25612 -8.90467 -8.78963 -8.41654 -7.63188 -7.22504 -6.37200 -4.41926 1.70671 1.85940 1.93795 2.35555 2.97568 3.06585 3.13088 3.16634 3.41558 4.11794 4.33415 4.60166 4.72022 4.85452 4.92067 5.07139 5.21120 5.25367 5.25926 5.34813 5.52807 5.55897 5.63033 5.71401 5.76216 5.76887 5.88981 5.99557 6.02925 6.05687 6.15883 6.27439 6.34829 6.39106 6.59557 6.84810 6.87779 7.05705 7.14156 7.19842 7.68571 7.80870 8.18870 8.49679 8.68754 9.19145 10.74699 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.010462 B = 0.006260 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.590966 B = 4471.478309 C = 6514.872885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.127 4.127 3 C -0.104 4.104 4 C -0.137 4.137 5 C 0.161 3.839 6 N -0.525 5.525 7 C 0.197 3.803 8 C -0.548 4.548 9 H 0.081 0.919 10 C 0.083 3.917 11 N -0.882 5.882 12 Si 0.866 3.134 13 H -0.271 1.271 14 H -0.280 1.280 15 H -0.263 1.263 16 C 0.532 3.468 17 O -0.534 6.534 18 C -0.119 4.119 19 H 0.128 0.872 20 C -0.111 4.111 21 C -0.067 4.067 22 S -0.295 6.295 23 C -0.057 4.057 24 C -0.174 4.174 25 C -0.108 4.108 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.118 0.882 30 H 0.138 0.862 31 H 0.044 0.956 32 H 0.039 0.961 33 H 0.269 0.731 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.179 0.821 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.793 -7.765 -5.390 9.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.128 4.128 3 C -0.122 4.122 4 C -0.157 4.157 5 C 0.066 3.934 6 N -0.243 5.243 7 C 0.077 3.923 8 C -0.586 4.586 9 H 0.099 0.901 10 C -0.122 4.122 11 N -0.518 5.518 12 Si 0.692 3.308 13 H -0.196 1.196 14 H -0.205 1.205 15 H -0.188 1.188 16 C 0.321 3.679 17 O -0.414 6.414 18 C -0.141 4.141 19 H 0.146 0.854 20 C -0.150 4.150 21 C -0.215 4.215 22 S -0.069 6.069 23 C -0.206 4.206 24 C -0.194 4.194 25 C -0.126 4.126 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.136 0.864 30 H 0.155 0.845 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.122 0.878 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.121 0.879 40 H 0.195 0.805 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.043 -8.417 -6.048 10.564 hybrid contribution -0.457 1.335 0.211 1.427 sum -2.500 -7.082 -5.837 9.512 Atomic orbital electron populations 1.20673 0.91995 1.02042 1.01462 1.19812 0.95518 0.93500 1.03994 1.20747 0.93439 0.97159 1.00884 1.21082 0.94097 0.97637 1.02869 1.18015 0.82286 0.94380 0.98728 1.45643 1.04250 1.09132 1.65264 1.20118 0.92089 0.80845 0.99227 1.21220 1.38475 1.06415 0.92476 0.90067 1.24833 0.95064 0.96463 0.95888 1.69879 1.41039 1.17820 1.23056 0.87001 0.79665 0.80586 0.83548 1.19629 1.20486 1.18754 1.20286 0.89389 0.82777 0.75464 1.90263 1.68372 1.31791 1.50996 1.22231 0.92656 1.03515 0.95732 0.85440 1.22436 0.92817 0.98394 1.01317 1.24258 0.98942 1.05489 0.92815 1.87383 1.31853 1.74225 1.13419 1.23921 0.95150 1.03113 0.98384 1.22709 0.94392 1.00103 1.02157 1.20901 0.93957 0.96848 1.00921 0.92024 0.92197 0.92107 0.86413 0.84464 0.93862 0.94333 0.92066 0.89194 0.89014 0.87790 0.88665 0.88724 0.87880 0.80487 0.86711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 10.01 36.01 0.36 -0.86 16 2 C -0.13 -1.96 5.88 -104.59 -0.62 -2.58 16 3 C -0.10 -1.72 9.69 -39.61 -0.38 -2.10 16 4 C -0.14 -2.61 9.05 -39.39 -0.36 -2.97 16 5 C 0.16 3.22 6.48 -83.70 -0.54 2.67 16 6 N -0.52 -10.53 2.69 -114.73 -0.31 -10.84 16 7 C 0.20 4.13 3.17 -5.19 -0.02 4.11 16 8 C -0.55 -13.59 9.04 -34.44 -0.31 -13.90 16 9 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 10 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 11 N -0.88 -24.46 13.96 55.43 0.77 -23.69 16 12 Si 0.87 18.77 27.47 -169.99 -4.67 14.10 16 13 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 14 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 15 H -0.26 -5.31 6.54 56.52 0.37 -4.94 16 16 C 0.53 10.00 6.55 -10.98 -0.07 9.93 16 17 O -0.53 -10.48 12.35 5.56 0.07 -10.42 16 18 C -0.12 -1.94 2.06 -90.65 -0.19 -2.13 16 19 H 0.13 2.29 6.47 -51.93 -0.34 1.95 16 20 C -0.11 -1.55 5.57 -25.15 -0.14 -1.69 16 21 C -0.07 -0.82 7.38 38.29 0.28 -0.54 16 22 S -0.29 -4.21 23.26 -107.50 -2.50 -6.71 16 23 C -0.06 -0.85 6.50 37.82 0.25 -0.61 16 24 C -0.17 -3.26 9.05 -39.39 -0.36 -3.61 16 25 C -0.11 -1.75 9.69 -39.61 -0.38 -2.13 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 28 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 29 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.14 2.75 6.17 -52.49 -0.32 2.42 16 31 H 0.04 0.86 4.49 -51.93 -0.23 0.62 16 32 H 0.04 0.80 6.19 -51.93 -0.32 0.47 16 33 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.09 1.32 7.45 -51.93 -0.39 0.94 16 36 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.09 1.38 7.89 -51.93 -0.41 0.98 16 39 H 0.10 1.51 7.30 -51.93 -0.38 1.13 16 40 H 0.18 3.44 4.53 -56.21 -0.25 3.18 16 41 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 LS Contribution 337.79 15.07 5.09 5.09 Total: -1.00 -27.74 337.79 -9.73 -37.47 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -5.61 Total: 9.37 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -2.57 Total: -14.39 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.47 Total: -34.52 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.07 Total: -10.42 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -4.67 Total: 14.10 kcal Atomic # 16 Polarization: -4.21 SS G_CDS: -2.50 Total: -6.71 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.74 -9.73 -37.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762134097.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.317 kcal (2) G-P(sol) polarization free energy of solvation -27.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds