Wall clock time and date at job start Tue Mar 31 2020 08:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46959 * 2 1 4 4 C 1.50697 * 109.47115 * 239.99957 * 2 1 3 5 5 H 1.08005 * 119.99989 * 239.99607 * 4 2 1 6 6 C 1.37878 * 120.00358 * 60.00106 * 4 2 1 7 7 N 1.31522 * 119.99771 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00219 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47214 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47104 * 119.99961 * 8 6 4 11 11 H 1.48505 * 109.46793 * 240.00026 * 8 6 4 12 12 C 1.52998 * 109.47132 * 120.00076 * 2 1 3 13 13 O 1.45206 * 109.46812 * 299.99843 * 12 2 1 14 14 C 1.34763 * 116.99577 * 180.02562 * 13 12 2 15 15 O 1.21511 * 120.00526 * 359.97438 * 14 13 12 16 16 C 1.47409 * 119.99518 * 180.02562 * 14 13 12 17 17 C 1.46435 * 120.25951 * 359.97438 * 16 14 13 18 18 C 1.35580 * 119.09941 * 180.02562 * 17 16 14 19 19 C 1.41179 * 119.48811 * 0.25726 * 18 17 16 20 20 N 1.32058 * 132.78602 * 179.74430 * 19 18 17 21 21 N 1.28584 * 109.72760 * 179.97438 * 20 19 18 22 22 C 1.31103 * 110.35379 * 359.45100 * 21 20 19 23 23 O 1.35681 * 126.33296 * 179.97438 * 22 21 20 24 24 N 1.36540 * 107.32344 * 0.60993 * 22 21 20 25 25 C 1.35987 * 133.09812 * 179.28958 * 24 22 21 26 26 H 1.08996 * 109.47227 * 300.00210 * 1 2 3 27 27 H 1.08997 * 109.47207 * 60.00076 * 1 2 3 28 28 H 1.09000 * 109.47264 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46980 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47099 * 299.99990 * 3 2 1 31 31 H 1.08996 * 109.47323 * 59.99848 * 3 2 1 32 32 H 0.96994 * 119.99822 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.47192 * 180.02562 * 12 2 1 34 34 H 1.08991 * 109.47598 * 59.99900 * 12 2 1 35 35 H 1.08000 * 120.45280 * 0.02562 * 17 16 14 36 36 H 1.08002 * 120.25260 * 179.97438 * 18 17 16 37 37 H 0.96694 * 114.00039 * 270.81119 * 23 22 21 38 38 H 1.07994 * 119.80138 * 0.02733 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 3.1464 -2.2871 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1874 -4.8164 12 6 2.0400 -0.7213 1.2492 13 8 1.5559 -0.0367 2.4348 14 6 1.9185 -0.5485 3.6275 15 8 2.6195 -1.5399 3.6756 16 6 1.4637 0.0938 4.8740 17 6 0.6184 1.2884 4.8227 18 6 0.2140 1.8603 5.9835 19 6 0.6192 1.2979 7.2134 20 7 0.3908 1.6311 8.4707 21 7 0.9823 0.8006 9.2541 22 6 1.6111 -0.1148 8.5574 23 8 2.3389 -1.1457 9.0560 24 7 1.4098 0.1695 7.2372 25 6 1.8274 -0.4208 6.0855 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 0.7081 1.1608 -3.4844 33 1 3.1299 -0.7209 1.2494 34 1 1.6767 -1.7488 1.2493 35 1 0.3210 1.7081 3.8731 36 1 -0.4094 2.7421 5.9674 37 1 3.2713 -0.9349 9.2010 38 1 2.4504 -1.3018 6.1292 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764830825.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:49:35 Heat of formation + Delta-G solvation = -30.267919 kcal Electronic energy + Delta-G solvation = -24320.127286 eV Core-core repulsion = 20550.747753 eV Total energy + Delta-G solvation = -3769.379533 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.81190 -41.57184 -39.28628 -38.82466 -38.17273 -36.64894 -34.95576 -33.28526 -32.60859 -30.21468 -27.94200 -27.50749 -27.22742 -25.90843 -24.88717 -23.76016 -22.64890 -20.83009 -20.57464 -19.58453 -18.48377 -18.35165 -18.07801 -17.62489 -17.44922 -17.29734 -16.62853 -16.10603 -15.94842 -15.09427 -14.87406 -14.82598 -14.49330 -13.80859 -13.79483 -13.59156 -13.43145 -13.29457 -13.12935 -12.83444 -12.82379 -12.58666 -12.30862 -12.27928 -12.12686 -11.87971 -11.71896 -11.70753 -11.26224 -11.20241 -10.87564 -10.69027 -10.37593 -9.38453 -8.02908 -6.20160 -0.91877 -0.35643 0.49245 0.92374 1.43147 1.46353 1.48326 1.54841 1.63036 2.16223 2.44777 2.51418 2.88938 3.17852 3.21343 3.30709 3.46965 3.59854 4.08545 4.28417 4.31252 4.34499 4.55844 4.65423 4.77666 4.85143 4.90884 5.10519 5.10809 5.23425 5.29553 5.31599 5.36519 5.53907 5.68282 5.69771 6.14800 6.22267 6.22375 6.40571 6.57602 6.85532 7.11786 7.48142 8.96408 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.036610 B = 0.002853 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.639892 B = 9811.819703 C =10382.861833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.062 3.938 3 C -0.121 4.121 4 C -0.532 4.532 5 H 0.050 0.950 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.948 3.052 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.098 3.902 13 O -0.336 6.336 14 C 0.517 3.483 15 O -0.533 6.533 16 C -0.138 4.138 17 C -0.035 4.035 18 C -0.081 4.081 19 C 0.216 3.784 20 N -0.300 5.300 21 N -0.268 5.268 22 C 0.333 3.667 23 O -0.426 6.426 24 N -0.411 5.411 25 C 0.159 3.841 26 H 0.040 0.960 27 H 0.061 0.939 28 H 0.018 0.982 29 H 0.019 0.981 30 H 0.060 0.940 31 H 0.040 0.960 32 H 0.261 0.739 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.183 0.817 36 H 0.199 0.801 37 H 0.432 0.568 38 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.397 1.211 16.744 16.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.061 3.939 3 C -0.178 4.178 4 C -0.571 4.571 5 H 0.068 0.932 6 C -0.171 4.171 7 N -0.536 5.536 8 Si 0.774 3.226 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 C 0.025 3.975 13 O -0.251 6.251 14 C 0.362 3.638 15 O -0.425 6.425 16 C -0.143 4.143 17 C -0.059 4.059 18 C -0.102 4.102 19 C -0.034 4.034 20 N -0.146 5.146 21 N -0.116 5.116 22 C 0.033 3.967 23 O -0.229 6.229 24 N -0.103 5.103 25 C 0.035 3.965 26 H 0.059 0.941 27 H 0.079 0.921 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.200 0.800 36 H 0.216 0.784 37 H 0.295 0.705 38 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 0.594 1.357 18.059 18.119 hybrid contribution 1.520 -1.383 -2.050 2.902 sum 2.113 -0.026 16.009 16.148 Atomic orbital electron populations 1.21643 0.96937 0.98671 1.00628 1.18268 0.93719 0.93346 0.88528 1.21640 0.97784 0.97786 1.00631 1.21253 1.32158 1.12439 0.91207 0.93209 1.25449 0.95046 0.95542 1.01016 1.69937 1.36715 1.23258 1.23692 0.85670 0.78112 0.78730 0.80069 1.19719 1.20804 1.20766 1.23370 0.97950 0.95355 0.80868 1.86540 1.68881 1.55274 1.14375 1.20696 0.76969 0.81352 0.84749 1.90849 1.36878 1.26262 1.88519 1.19600 1.05286 1.00193 0.89250 1.22626 0.91810 0.90824 1.00645 1.20574 1.02266 1.02509 0.84854 1.22667 0.96199 0.87094 0.97425 1.74894 1.21792 1.20905 0.97006 1.74477 1.10677 1.01153 1.25339 1.21920 1.02998 0.94098 0.77725 1.84991 1.28048 1.28750 1.81128 1.44060 1.36691 1.22479 1.07118 1.21834 0.95498 0.97372 0.81825 0.94134 0.92051 0.96234 0.96163 0.92072 0.94110 0.92926 0.92609 0.92715 0.80002 0.78415 0.70536 0.78177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.28 8.11 71.98 0.58 -4.69 16 2 C 0.06 2.75 0.58 -52.93 -0.03 2.72 16 3 C -0.12 -5.24 8.11 71.98 0.58 -4.65 16 4 C -0.53 -26.88 8.01 25.60 0.21 -26.68 16 5 H 0.05 2.53 7.74 -2.91 -0.02 2.50 16 6 C 0.03 1.51 5.15 84.65 0.44 1.94 16 7 N -0.90 -46.66 9.35 21.45 0.20 -46.46 16 8 Si 0.95 40.97 29.54 68.60 2.03 43.00 16 9 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 10 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 11 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 12 C 0.10 3.81 4.27 71.98 0.31 4.12 16 13 O -0.34 -10.89 8.26 -56.74 -0.47 -11.35 16 14 C 0.52 14.71 7.90 70.24 0.55 15.27 16 15 O -0.53 -17.59 16.09 19.80 0.32 -17.27 16 16 C -0.14 -2.88 5.98 -19.12 -0.11 -3.00 16 17 C -0.03 -0.58 9.84 23.79 0.23 -0.35 16 18 C -0.08 -1.26 10.09 22.38 0.23 -1.04 16 19 C 0.22 4.62 7.91 134.08 1.06 5.68 16 20 N -0.30 -7.78 12.28 -55.00 -0.68 -8.45 16 21 N -0.27 -6.92 12.19 -173.29 -2.11 -9.03 16 22 C 0.33 6.86 9.39 179.60 1.69 8.55 16 23 O -0.43 -5.94 13.65 -89.99 -1.23 -7.17 16 24 N -0.41 -8.22 2.95 -465.92 -1.38 -9.59 16 25 C 0.16 2.93 10.54 83.66 0.88 3.81 16 26 H 0.04 1.53 7.68 -2.39 -0.02 1.51 16 27 H 0.06 2.98 6.07 -2.39 -0.01 2.97 16 28 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 2.96 6.07 -2.39 -0.01 2.95 16 31 H 0.04 1.53 7.68 -2.39 -0.02 1.51 16 32 H 0.26 13.03 8.31 -92.71 -0.77 12.26 16 33 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.18 2.63 7.77 -2.91 -0.02 2.61 16 36 H 0.20 1.87 8.06 -2.91 -0.02 1.84 16 37 H 0.43 1.08 9.06 -74.06 -0.67 0.41 16 38 H 0.20 3.08 7.58 -2.91 -0.02 3.06 16 Total: -1.00 -64.47 330.07 3.74 -60.73 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: 0.45 Total: 3.93 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: 6.61 Total: 1.67 kcal Atomic # 7 Polarization: -69.57 SS G_CDS: -3.96 Total: -73.53 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -1.38 Total: -35.79 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -64.47 3.74 -60.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764830825.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.457 kcal (2) G-P(sol) polarization free energy of solvation -64.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds