Wall clock time and date at job start Tue Mar 31 2020 08:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.49796 * 2 1 4 4 C 1.53036 * 109.49433 * 120.06603 * 2 1 3 5 5 C 1.53046 * 109.53581 * 181.31626 * 4 2 1 6 6 C 1.53194 * 109.31067 * 298.63412 * 5 4 2 7 7 N 1.46930 * 108.77349 * 54.63678 * 6 5 4 8 8 C 1.34772 * 120.63067 * 126.36855 * 7 6 5 9 9 O 1.21788 * 120.00051 * 175.48347 * 8 7 6 10 10 C 1.41480 * 120.00111 * 355.48283 * 8 7 6 11 11 C 1.35651 * 119.99845 * 201.80971 * 10 8 7 12 12 C 1.41579 * 120.00525 * 31.17062 * 11 10 8 13 13 C 1.37036 * 125.47971 * 188.96219 * 12 11 10 14 14 C 1.37430 * 113.22709 * 180.28918 * 13 12 11 15 15 C 1.33869 * 115.12641 * 359.49890 * 14 13 12 16 16 S 1.70603 * 111.01186 * 0.48974 * 15 14 13 17 17 C 1.46920 * 118.73849 * 306.63784 * 7 6 5 18 18 C 1.50701 * 109.58568 * 173.14623 * 17 7 6 19 19 N 1.27944 * 120.00226 * 293.25768 * 18 17 7 20 20 Si 1.86799 * 119.99808 * 113.26347 * 18 17 7 21 21 H 1.48499 * 109.47270 * 90.00004 * 20 18 17 22 22 H 1.48500 * 109.47162 * 209.99809 * 20 18 17 23 23 H 1.48506 * 109.47119 * 329.99730 * 20 18 17 24 24 H 1.09000 * 109.46794 * 299.93725 * 1 2 3 25 25 H 1.09006 * 109.46755 * 59.93004 * 1 2 3 26 26 H 1.08993 * 109.47556 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47289 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46896 * 300.07047 * 3 2 1 29 29 H 1.09005 * 109.46838 * 60.06599 * 3 2 1 30 30 H 1.08996 * 109.46299 * 61.29736 * 4 2 1 31 31 H 1.09002 * 109.44827 * 301.32445 * 4 2 1 32 32 H 1.08994 * 109.49921 * 178.68459 * 5 4 2 33 33 H 1.09005 * 109.52154 * 58.60049 * 5 4 2 34 34 H 1.08992 * 109.58615 * 294.84661 * 6 5 4 35 35 H 1.09003 * 109.70212 * 174.48575 * 6 5 4 36 36 H 1.07997 * 119.99580 * 21.80736 * 10 8 7 37 37 H 1.08005 * 119.99673 * 211.17356 * 11 10 8 38 38 H 1.08004 * 123.38882 * 0.02562 * 13 12 11 39 39 H 1.07996 * 122.44089 * 179.73483 * 14 13 12 40 40 H 1.07996 * 124.49475 * 180.21238 * 15 14 13 41 41 H 1.09000 * 109.59027 * 293.57557 * 17 7 6 42 42 H 0.96995 * 119.99787 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 6 2.0408 -0.7228 1.2485 5 6 3.5709 -0.6947 1.2662 6 6 4.1053 -1.4267 0.0311 7 7 3.5046 -0.8294 -1.1694 8 6 4.2811 -0.3862 -2.1778 9 8 3.7703 0.0312 -3.2016 10 6 5.6897 -0.4056 -2.0471 11 6 6.4535 0.4102 -2.8160 12 6 5.9522 1.6685 -3.2280 13 6 6.5466 2.5020 -4.1389 14 6 5.8453 3.6654 -4.3474 15 6 4.7123 3.7800 -3.6438 16 16 4.4669 2.4133 -2.6526 17 6 2.0416 -0.7190 -1.2470 18 6 1.6587 0.0675 -2.4741 19 7 1.9554 1.3093 -2.5564 20 14 0.7509 -0.7707 -3.8751 21 1 -0.7132 -0.6611 -3.6520 22 1 1.1065 -0.1139 -5.1585 23 1 1.1376 -2.2035 -3.9284 24 1 -0.3633 0.5129 0.8906 25 1 -0.3633 0.5150 -0.8894 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1307 1.4418 -0.0005 28 1 1.6766 1.9566 -0.8894 29 1 1.6786 1.9559 0.8906 30 1 1.6967 -1.7569 1.2358 31 1 1.6582 -0.2236 2.1388 32 1 3.9334 -1.1891 2.1673 33 1 3.9164 0.3391 1.2543 34 1 3.8375 -2.4818 0.0874 35 1 5.1897 -1.3268 -0.0147 36 1 6.1568 -1.0700 -1.3352 37 1 7.4442 0.0998 -3.1139 38 1 7.4753 2.2701 -4.6392 39 1 6.1817 4.4298 -5.0321 40 1 4.0446 4.6274 -3.6933 41 1 1.6021 -1.7152 -1.2970 42 1 1.7086 1.8156 -3.3461 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765128744.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:26 Heat of formation + Delta-G solvation = 87.007329 kcal Electronic energy + Delta-G solvation = -25257.166576 eV Core-core repulsion = 22025.509955 eV Total energy + Delta-G solvation = -3231.656621 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 306.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.01870 -39.50256 -38.47559 -36.52580 -35.00255 -34.51990 -32.55250 -29.97936 -28.33920 -27.97118 -26.81891 -25.36695 -23.90008 -23.05281 -21.32206 -20.49673 -19.98419 -19.21075 -18.05390 -17.87894 -17.36072 -16.58844 -16.48883 -15.94723 -15.70923 -15.36445 -15.02028 -14.69881 -14.62048 -14.32275 -14.14286 -13.99858 -13.91741 -13.52418 -13.42378 -13.16370 -12.96458 -12.85546 -12.60798 -12.52539 -12.35862 -12.20645 -12.04080 -11.83029 -11.51835 -11.48680 -11.36986 -10.98696 -10.86379 -10.05873 -9.59920 -9.30397 -8.83001 -8.51386 -0.73082 0.87908 1.03031 1.23927 1.28448 1.45025 1.56418 1.78964 2.00920 2.07999 2.34522 2.50409 3.44366 3.70426 3.85352 3.93813 3.99008 4.05160 4.08875 4.22986 4.32442 4.36873 4.42979 4.54413 4.58419 4.62400 4.72728 4.75488 4.76106 4.83737 4.95447 5.05448 5.06591 5.09131 5.16077 5.20899 5.21889 5.30683 5.39212 5.39534 5.49732 5.60889 5.64092 5.74820 6.02123 6.51989 7.16882 7.32712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.065 4.065 3 C -0.153 4.153 4 C -0.110 4.110 5 C -0.138 4.138 6 C 0.106 3.894 7 N -0.596 5.596 8 C 0.554 3.446 9 O -0.522 6.522 10 C -0.278 4.278 11 C 0.051 3.949 12 C -0.247 4.247 13 C -0.095 4.095 14 C -0.162 4.162 15 C -0.278 4.278 16 S 0.337 5.663 17 C 0.187 3.813 18 C 0.021 3.979 19 N -0.602 5.602 20 Si 0.945 3.055 21 H -0.250 1.250 22 H -0.248 1.248 23 H -0.243 1.243 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.102 0.898 29 H 0.038 0.962 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.131 0.869 40 H 0.157 0.843 41 H 0.083 0.917 42 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.306 -1.878 3.604 4.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.066 4.066 3 C -0.210 4.210 4 C -0.148 4.148 5 C -0.177 4.177 6 C -0.017 4.017 7 N -0.329 5.329 8 C 0.347 3.653 9 O -0.401 6.401 10 C -0.302 4.302 11 C 0.030 3.970 12 C -0.365 4.365 13 C -0.128 4.128 14 C -0.193 4.193 15 C -0.417 4.417 16 S 0.609 5.391 17 C 0.084 3.916 18 C -0.226 4.226 19 N -0.220 5.220 20 Si 0.763 3.237 21 H -0.174 1.174 22 H -0.171 1.171 23 H -0.166 1.166 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.120 0.880 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.156 0.844 39 H 0.149 0.851 40 H 0.175 0.825 41 H 0.101 0.899 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.067 -1.787 4.037 4.542 hybrid contribution 1.099 0.361 -1.605 1.979 sum 0.032 -1.426 2.432 2.819 Atomic orbital electron populations 1.21853 0.93830 1.01956 1.02368 1.20715 0.95610 0.97199 0.93116 1.22365 1.01336 0.94271 1.03049 1.21614 0.95088 1.00551 0.97533 1.21983 0.96383 1.01904 0.97381 1.21849 0.98665 0.97100 0.84072 1.48082 1.05473 1.61317 1.18068 1.17043 0.87407 0.77481 0.83335 1.90777 1.73781 1.46674 1.28826 1.21965 0.93627 1.08884 1.05675 1.20638 0.99182 0.89066 0.88139 1.22999 1.03649 1.00875 1.08976 1.20858 1.00768 0.93810 0.97323 1.19856 0.96021 0.99465 1.03953 1.25864 1.02666 1.05862 1.07288 1.84354 1.14430 1.02766 1.37501 1.20389 0.80247 0.97782 0.93196 1.29571 0.95991 0.96506 1.00543 1.67932 1.16556 1.09085 1.28474 0.85591 0.78647 0.81462 0.78041 1.17436 1.17142 1.16584 0.92014 0.92404 0.92442 0.92696 0.87996 0.94259 0.91735 0.91281 0.90639 0.90743 0.91088 0.89266 0.84157 0.84382 0.84352 0.85100 0.82537 0.89870 0.85347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.18 8.30 37.16 0.31 0.48 16 2 C -0.06 0.05 0.54 -154.61 -0.08 -0.03 16 3 C -0.15 -0.06 7.22 37.16 0.27 0.20 16 4 C -0.11 0.21 4.71 -26.69 -0.13 0.08 16 5 C -0.14 0.32 5.74 -26.61 -0.15 0.17 16 6 C 0.11 -0.23 6.33 -3.71 -0.02 -0.26 16 7 N -0.60 -0.11 2.42 -170.22 -0.41 -0.52 16 8 C 0.55 1.12 5.57 -15.03 -0.08 1.04 16 9 O -0.52 -2.17 8.95 5.11 0.05 -2.12 16 10 C -0.28 -0.16 8.83 -39.27 -0.35 -0.51 16 11 C 0.05 0.05 9.69 -39.23 -0.38 -0.33 16 12 C -0.25 -0.69 5.53 -38.74 -0.21 -0.91 16 13 C -0.09 -0.24 10.25 -40.31 -0.41 -0.65 16 14 C -0.16 -0.44 10.15 -41.41 -0.42 -0.86 16 15 C -0.28 -0.74 10.92 29.20 0.32 -0.42 16 16 S 0.34 0.88 16.08 -107.50 -1.73 -0.85 16 17 C 0.19 0.01 2.22 -68.98 -0.15 -0.14 16 18 C 0.02 0.02 1.49 -13.90 -0.02 0.00 16 19 N -0.60 -0.87 5.41 56.23 0.30 -0.57 16 20 Si 0.95 1.44 28.60 -169.99 -4.86 -3.42 16 21 H -0.25 -0.29 7.11 56.52 0.40 0.11 16 22 H -0.25 -0.83 7.11 56.52 0.40 -0.43 16 23 H -0.24 -0.54 7.11 56.52 0.40 -0.14 16 24 H 0.06 -0.08 8.14 -51.93 -0.42 -0.50 16 25 H 0.06 -0.04 7.41 -51.93 -0.38 -0.43 16 26 H 0.06 -0.11 8.14 -51.93 -0.42 -0.54 16 27 H 0.05 0.07 5.97 -51.93 -0.31 -0.24 16 28 H 0.10 0.12 4.95 -52.00 -0.26 -0.13 16 29 H 0.04 0.02 8.14 -51.93 -0.42 -0.40 16 30 H 0.06 -0.15 8.14 -51.93 -0.42 -0.57 16 31 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 32 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 33 H 0.07 -0.09 6.34 -51.93 -0.33 -0.41 16 34 H 0.07 -0.22 8.14 -51.93 -0.42 -0.64 16 35 H 0.09 -0.29 5.42 -51.93 -0.28 -0.57 16 36 H 0.14 -0.28 6.12 -52.49 -0.32 -0.60 16 37 H 0.14 -0.20 8.06 -52.48 -0.42 -0.62 16 38 H 0.14 0.07 8.06 -52.48 -0.42 -0.36 16 39 H 0.13 0.16 8.06 -52.49 -0.42 -0.26 16 40 H 0.16 0.16 8.06 -52.49 -0.42 -0.27 16 41 H 0.08 -0.08 7.54 -51.93 -0.39 -0.48 16 42 H 0.33 0.38 8.23 -40.82 -0.34 0.05 16 LS Contribution 321.48 15.07 4.84 4.84 Total: 0.00 -4.01 321.48 -9.39 -13.39 By element: Atomic # 1 Polarization: -2.58 SS G_CDS: -6.06 Total: -8.64 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -1.52 Total: -2.13 kcal Atomic # 7 Polarization: -0.98 SS G_CDS: -0.11 Total: -1.09 kcal Atomic # 8 Polarization: -2.17 SS G_CDS: 0.05 Total: -2.12 kcal Atomic # 14 Polarization: 1.44 SS G_CDS: -4.86 Total: -3.42 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -1.73 Total: -0.85 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -4.01 -9.39 -13.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765128744.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.401 kcal (2) G-P(sol) polarization free energy of solvation -4.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds