Wall clock time and date at job start Tue Mar 31 2020 08:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.49796 * 2 1 4 4 C 1.53036 * 109.49433 * 120.06603 * 2 1 3 5 5 C 1.53046 * 109.53581 * 181.31626 * 4 2 1 6 6 C 1.53194 * 109.31067 * 298.63412 * 5 4 2 7 7 N 1.46930 * 108.77349 * 54.63678 * 6 5 4 8 8 C 1.34772 * 120.63067 * 126.36855 * 7 6 5 9 9 O 1.21788 * 120.00051 * 175.48347 * 8 7 6 10 10 C 1.41480 * 120.00111 * 355.48283 * 8 7 6 11 11 C 1.35651 * 119.99845 * 201.80971 * 10 8 7 12 12 C 1.41579 * 120.00525 * 31.17062 * 11 10 8 13 13 C 1.37036 * 125.47971 * 188.96219 * 12 11 10 14 14 C 1.37430 * 113.22709 * 180.28918 * 13 12 11 15 15 C 1.33869 * 115.12641 * 359.49890 * 14 13 12 16 16 S 1.70603 * 111.01186 * 0.48974 * 15 14 13 17 17 C 1.46920 * 118.73849 * 306.63784 * 7 6 5 18 18 C 1.50701 * 109.58568 * 173.14623 * 17 7 6 19 19 N 1.27944 * 120.00226 * 293.25768 * 18 17 7 20 20 Si 1.86799 * 119.99808 * 113.26347 * 18 17 7 21 21 H 1.48499 * 109.47270 * 90.00004 * 20 18 17 22 22 H 1.48500 * 109.47162 * 209.99809 * 20 18 17 23 23 H 1.48506 * 109.47119 * 329.99730 * 20 18 17 24 24 H 1.09000 * 109.46794 * 299.93725 * 1 2 3 25 25 H 1.09006 * 109.46755 * 59.93004 * 1 2 3 26 26 H 1.08993 * 109.47556 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47289 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46896 * 300.07047 * 3 2 1 29 29 H 1.09005 * 109.46838 * 60.06599 * 3 2 1 30 30 H 1.08996 * 109.46299 * 61.29736 * 4 2 1 31 31 H 1.09002 * 109.44827 * 301.32445 * 4 2 1 32 32 H 1.08994 * 109.49921 * 178.68459 * 5 4 2 33 33 H 1.09005 * 109.52154 * 58.60049 * 5 4 2 34 34 H 1.08992 * 109.58615 * 294.84661 * 6 5 4 35 35 H 1.09003 * 109.70212 * 174.48575 * 6 5 4 36 36 H 1.07997 * 119.99580 * 21.80736 * 10 8 7 37 37 H 1.08005 * 119.99673 * 211.17356 * 11 10 8 38 38 H 1.08004 * 123.38882 * 0.02562 * 13 12 11 39 39 H 1.07996 * 122.44089 * 179.73483 * 14 13 12 40 40 H 1.07996 * 124.49475 * 180.21238 * 15 14 13 41 41 H 1.09000 * 109.59027 * 293.57557 * 17 7 6 42 42 H 0.96995 * 119.99787 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 6 2.0408 -0.7228 1.2485 5 6 3.5709 -0.6947 1.2662 6 6 4.1053 -1.4267 0.0311 7 7 3.5046 -0.8294 -1.1694 8 6 4.2811 -0.3862 -2.1778 9 8 3.7703 0.0312 -3.2016 10 6 5.6897 -0.4056 -2.0471 11 6 6.4535 0.4102 -2.8160 12 6 5.9522 1.6685 -3.2280 13 6 6.5466 2.5020 -4.1389 14 6 5.8453 3.6654 -4.3474 15 6 4.7123 3.7800 -3.6438 16 16 4.4669 2.4133 -2.6526 17 6 2.0416 -0.7190 -1.2470 18 6 1.6587 0.0675 -2.4741 19 7 1.9554 1.3093 -2.5564 20 14 0.7509 -0.7707 -3.8751 21 1 -0.7132 -0.6611 -3.6520 22 1 1.1065 -0.1139 -5.1585 23 1 1.1376 -2.2035 -3.9284 24 1 -0.3633 0.5129 0.8906 25 1 -0.3633 0.5150 -0.8894 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1307 1.4418 -0.0005 28 1 1.6766 1.9566 -0.8894 29 1 1.6786 1.9559 0.8906 30 1 1.6967 -1.7569 1.2358 31 1 1.6582 -0.2236 2.1388 32 1 3.9334 -1.1891 2.1673 33 1 3.9164 0.3391 1.2543 34 1 3.8375 -2.4818 0.0874 35 1 5.1897 -1.3268 -0.0147 36 1 6.1568 -1.0700 -1.3352 37 1 7.4442 0.0998 -3.1139 38 1 7.4753 2.2701 -4.6392 39 1 6.1817 4.4298 -5.0321 40 1 4.0446 4.6274 -3.6933 41 1 1.6021 -1.7152 -1.2970 42 1 1.7086 1.8156 -3.3461 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765128744.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:26 Heat of formation + Delta-G solvation = 96.658046 kcal Electronic energy + Delta-G solvation = -25256.748090 eV Core-core repulsion = 22025.509955 eV Total energy + Delta-G solvation = -3231.238135 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 306.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.02386 -39.53493 -38.58390 -36.53233 -34.99146 -34.59218 -32.47214 -30.06160 -28.37431 -27.92090 -26.73711 -25.44826 -23.90563 -23.03062 -21.30922 -20.60387 -20.01238 -19.20261 -18.07292 -17.94080 -17.43514 -16.68968 -16.49975 -15.95068 -15.66098 -15.39206 -15.02361 -14.70108 -14.68142 -14.35376 -14.15386 -14.00704 -13.91630 -13.59069 -13.46184 -13.19749 -13.00173 -12.79823 -12.68972 -12.53928 -12.47638 -12.20322 -11.93640 -11.83180 -11.60861 -11.42832 -11.30002 -11.05562 -10.95432 -10.14749 -9.62751 -9.38836 -8.90921 -8.64255 -0.81583 0.77181 0.91013 1.11460 1.17141 1.30202 1.38161 1.67060 1.86860 1.94550 2.32531 2.45045 3.45354 3.82656 3.92017 4.00513 4.06627 4.11387 4.15612 4.20845 4.32937 4.45002 4.47674 4.56612 4.61024 4.68161 4.73120 4.86487 4.91125 4.95726 4.97623 5.07397 5.07762 5.18668 5.21249 5.24533 5.27441 5.30478 5.39931 5.44748 5.48800 5.55838 5.60993 5.70011 5.97159 6.51884 7.08159 7.26693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.061 4.061 3 C -0.148 4.148 4 C -0.109 4.109 5 C -0.134 4.134 6 C 0.101 3.899 7 N -0.593 5.593 8 C 0.543 3.457 9 O -0.550 6.550 10 C -0.273 4.273 11 C 0.036 3.964 12 C -0.256 4.256 13 C -0.111 4.111 14 C -0.173 4.173 15 C -0.296 4.296 16 S 0.329 5.671 17 C 0.181 3.819 18 C 0.021 3.979 19 N -0.604 5.604 20 Si 0.965 3.035 21 H -0.243 1.243 22 H -0.280 1.280 23 H -0.250 1.250 24 H 0.061 0.939 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.045 0.955 28 H 0.092 0.908 29 H 0.035 0.965 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.168 0.832 37 H 0.163 0.837 38 H 0.155 0.845 39 H 0.141 0.859 40 H 0.166 0.834 41 H 0.097 0.903 42 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.711 -3.162 4.818 5.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.062 4.062 3 C -0.205 4.205 4 C -0.146 4.146 5 C -0.172 4.172 6 C -0.021 4.021 7 N -0.326 5.326 8 C 0.337 3.663 9 O -0.431 6.431 10 C -0.297 4.297 11 C 0.015 3.985 12 C -0.374 4.374 13 C -0.143 4.143 14 C -0.205 4.205 15 C -0.435 4.435 16 S 0.602 5.398 17 C 0.078 3.922 18 C -0.226 4.226 19 N -0.223 5.223 20 Si 0.785 3.215 21 H -0.167 1.167 22 H -0.206 1.206 23 H -0.173 1.173 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.110 0.890 29 H 0.054 0.946 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.119 0.881 36 H 0.185 0.815 37 H 0.180 0.820 38 H 0.173 0.827 39 H 0.159 0.841 40 H 0.183 0.817 41 H 0.115 0.885 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.674 -3.084 5.287 6.158 hybrid contribution 0.951 0.741 -1.986 2.324 sum 0.278 -2.343 3.301 4.057 Atomic orbital electron populations 1.21859 0.93475 1.02644 1.02051 1.20681 0.95864 0.96314 0.93368 1.22289 1.00676 0.95234 1.02332 1.21612 0.95405 1.00947 0.96657 1.21949 0.96029 1.01273 0.97990 1.22071 0.99317 0.97719 0.82958 1.48175 1.05449 1.60627 1.18334 1.17369 0.88174 0.77396 0.83371 1.90768 1.74343 1.47983 1.30044 1.22237 0.92998 1.08959 1.05466 1.20943 1.00527 0.88629 0.88418 1.23331 1.03403 1.01779 1.08905 1.21116 1.01618 0.93838 0.97751 1.20103 0.96148 1.00002 1.04209 1.26062 1.03164 1.06382 1.07847 1.84307 1.14911 1.02877 1.37716 1.20526 0.80497 0.98322 0.92889 1.29610 0.95788 0.96376 1.00862 1.67970 1.16629 1.09311 1.28347 0.85315 0.78984 0.80443 0.76801 1.16684 1.20552 1.17321 0.91952 0.93136 0.91240 0.93580 0.89001 0.94582 0.90602 0.91350 0.89090 0.92120 0.89523 0.88094 0.81462 0.81972 0.82696 0.84120 0.81681 0.88480 0.85698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.41 8.30 71.98 0.60 1.01 16 2 C -0.06 0.12 0.54 -52.24 -0.03 0.09 16 3 C -0.15 -0.22 7.22 71.98 0.52 0.30 16 4 C -0.11 0.55 4.71 30.62 0.14 0.69 16 5 C -0.13 0.81 5.74 30.67 0.18 0.98 16 6 C 0.10 -0.61 6.33 86.36 0.55 -0.07 16 7 N -0.59 0.17 2.42 -810.64 -1.96 -1.79 16 8 C 0.54 2.15 5.57 85.04 0.47 2.63 16 9 O -0.55 -5.06 8.95 -4.63 -0.04 -5.10 16 10 C -0.27 -0.11 8.83 22.47 0.20 0.09 16 11 C 0.04 0.06 9.69 22.49 0.22 0.28 16 12 C -0.26 -1.60 5.53 22.81 0.13 -1.47 16 13 C -0.11 -0.64 10.25 21.80 0.22 -0.42 16 14 C -0.17 -1.14 10.15 21.08 0.21 -0.93 16 15 C -0.30 -2.03 10.92 66.83 0.73 -1.30 16 16 S 0.33 2.17 16.08 -56.49 -0.91 1.26 16 17 C 0.18 -0.04 2.22 44.09 0.10 0.06 16 18 C 0.02 0.06 1.49 88.68 0.13 0.20 16 19 N -0.60 -2.61 5.41 24.11 0.13 -2.48 16 20 Si 0.96 3.98 28.60 68.60 1.96 5.94 16 21 H -0.24 -0.64 7.11 99.48 0.71 0.07 16 22 H -0.28 -2.60 7.11 99.48 0.71 -1.89 16 23 H -0.25 -1.26 7.11 99.48 0.71 -0.56 16 24 H 0.06 -0.18 8.14 -2.39 -0.02 -0.19 16 25 H 0.05 -0.06 7.41 -2.38 -0.02 -0.08 16 26 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 27 H 0.05 0.15 5.97 -2.39 -0.01 0.14 16 28 H 0.09 0.34 4.95 -2.54 -0.01 0.33 16 29 H 0.04 0.06 8.14 -2.38 -0.02 0.04 16 30 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 31 H 0.07 -0.31 8.14 -2.39 -0.02 -0.32 16 32 H 0.09 -0.79 8.14 -2.39 -0.02 -0.81 16 33 H 0.06 -0.17 6.34 -2.38 -0.02 -0.18 16 34 H 0.09 -0.75 8.14 -2.39 -0.02 -0.77 16 35 H 0.10 -0.86 5.42 -2.39 -0.01 -0.87 16 36 H 0.17 -1.01 6.12 -2.91 -0.02 -1.02 16 37 H 0.16 -0.65 8.06 -2.91 -0.02 -0.67 16 38 H 0.16 0.18 8.06 -2.91 -0.02 0.16 16 39 H 0.14 0.48 8.06 -2.91 -0.02 0.46 16 40 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 41 H 0.10 -0.30 7.54 -2.39 -0.02 -0.32 16 42 H 0.33 1.45 8.23 -92.71 -0.76 0.69 16 Total: 0.00 -10.74 321.48 4.57 -6.17 By element: Atomic # 1 Polarization: -7.16 SS G_CDS: 1.02 Total: -6.14 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 4.37 Total: 2.14 kcal Atomic # 7 Polarization: -2.44 SS G_CDS: -1.83 Total: -4.27 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.04 Total: -5.10 kcal Atomic # 14 Polarization: 3.98 SS G_CDS: 1.96 Total: 5.94 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -0.91 Total: 1.26 kcal Total: -10.74 4.57 -6.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765128744.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.826 kcal (2) G-P(sol) polarization free energy of solvation -10.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds