Wall clock time and date at job start Tue Mar 31 2020 08:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47040 * 2 1 4 4 C 1.50708 * 109.47023 * 240.00554 * 2 1 3 5 5 H 1.07993 * 119.99607 * 240.00086 * 4 2 1 6 6 C 1.37878 * 119.99881 * 59.99381 * 4 2 1 7 7 N 1.31515 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99834 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47077 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46716 * 120.00540 * 8 6 4 11 11 H 1.48503 * 109.47168 * 240.00334 * 8 6 4 12 12 C 1.52995 * 109.47253 * 120.00456 * 2 1 3 13 13 O 1.45196 * 109.47410 * 300.00060 * 12 2 1 14 14 C 1.34828 * 117.00350 * 180.02562 * 13 12 2 15 15 O 1.21568 * 120.00044 * 359.97438 * 14 13 12 16 16 C 1.47039 * 120.00057 * 179.97438 * 14 13 12 17 17 C 1.38932 * 120.90928 * 359.97438 * 16 14 13 18 18 C 1.39890 * 119.42258 * 180.02562 * 17 16 14 19 19 C 1.35043 * 121.27864 * 359.93950 * 18 17 16 20 20 N 1.36245 * 121.59457 * 0.04298 * 19 18 17 21 21 C 1.36376 * 133.87491 * 179.97438 * 20 19 18 22 22 O 1.35710 * 126.33944 * 359.97178 * 21 20 19 23 23 N 1.31096 * 107.32545 * 179.97438 * 21 20 19 24 24 N 1.28699 * 110.31442 * 0.02562 * 23 21 20 25 25 C 1.31456 * 109.67336 * 359.97438 * 24 23 21 26 26 H 1.09004 * 109.47017 * 299.99743 * 1 2 3 27 27 H 1.09002 * 109.47224 * 59.99572 * 1 2 3 28 28 H 1.08997 * 109.47630 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46847 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.47625 * 300.00594 * 3 2 1 31 31 H 1.08999 * 109.46782 * 60.00666 * 3 2 1 32 32 H 0.96999 * 119.99470 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.47216 * 179.97438 * 12 2 1 34 34 H 1.09002 * 109.47098 * 59.99837 * 12 2 1 35 35 H 1.08003 * 120.28964 * 359.97438 * 17 16 14 36 36 H 1.08001 * 119.36337 * 180.02562 * 18 17 16 37 37 H 1.07999 * 119.20485 * 180.31828 * 19 18 17 38 38 H 0.96701 * 114.00278 * 89.99488 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6531 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9433 0.8303 -2.6033 8 14 2.3223 -1.1192 -4.0081 9 1 3.1473 -2.2860 -3.6041 10 1 1.1675 -1.5862 -4.8167 11 1 3.1470 -0.1853 -4.8162 12 6 2.0400 -0.7213 1.2491 13 8 1.5560 -0.0370 2.4348 14 6 1.9188 -0.5491 3.6281 15 8 2.6201 -1.5409 3.6761 16 6 1.4661 0.0920 4.8715 17 6 0.6646 1.2264 4.8387 18 6 0.2522 1.8114 6.0407 19 6 0.6171 1.2942 7.2336 20 7 1.4014 0.1835 7.3203 21 6 1.9095 -0.5359 8.3615 22 8 1.7284 -0.2779 9.6814 23 7 2.6056 -1.5227 7.8513 24 7 2.5720 -1.4753 6.5656 25 6 1.8472 -0.4488 6.1794 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 0.7092 1.1619 -3.4843 33 1 3.1300 -0.7217 1.2489 34 1 1.6766 -1.7490 1.2491 35 1 0.3632 1.6533 3.8936 36 1 -0.3711 2.6929 6.0141 37 1 0.2753 1.7700 8.1409 38 1 0.9540 -0.7123 10.0645 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766285716.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:49:37 Heat of formation + Delta-G solvation = -29.407678 kcal Electronic energy + Delta-G solvation = -24517.008396 eV Core-core repulsion = 20747.666166 eV Total energy + Delta-G solvation = -3769.342230 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.71294 -41.35425 -39.25825 -38.76428 -38.22347 -36.56973 -34.92108 -33.23692 -32.29090 -30.33583 -27.74993 -27.51262 -27.19709 -26.01099 -24.63146 -24.18726 -22.43929 -20.73783 -20.38654 -19.38922 -18.74905 -18.33429 -17.88781 -17.53975 -17.31583 -17.13845 -16.61163 -16.36017 -15.80638 -15.03359 -14.81587 -14.74388 -14.17617 -13.77978 -13.74386 -13.57704 -13.31281 -13.26683 -13.09486 -12.94219 -12.83257 -12.59436 -12.30394 -12.18112 -12.12738 -11.75901 -11.69840 -11.53486 -11.25686 -11.18027 -10.78922 -10.70001 -10.37929 -9.34926 -8.03717 -6.20546 -0.99864 -0.13045 0.59327 1.22855 1.40954 1.42389 1.45920 1.54844 1.67810 2.24631 2.45974 2.49120 2.91660 3.13272 3.20005 3.51942 3.71928 3.75794 4.26144 4.29056 4.33615 4.41184 4.62738 4.65529 4.70778 4.88097 4.91133 5.09675 5.12154 5.23996 5.28794 5.37894 5.53097 5.55845 5.67757 5.69362 6.14336 6.21549 6.29335 6.40739 6.71842 6.84303 7.24658 7.47164 8.95857 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.034977 B = 0.003032 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.329338 B = 9233.341029 C = 9840.043775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.064 3.936 3 C -0.119 4.119 4 C -0.536 4.536 5 H 0.045 0.955 6 C 0.032 3.968 7 N -0.896 5.896 8 Si 0.948 3.052 9 H -0.277 1.277 10 H -0.279 1.279 11 H -0.279 1.279 12 C 0.099 3.901 13 O -0.337 6.337 14 C 0.501 3.499 15 O -0.530 6.530 16 C -0.138 4.138 17 C 0.037 3.963 18 C -0.143 4.143 19 C 0.114 3.886 20 N -0.408 5.408 21 C 0.338 3.662 22 O -0.418 6.418 23 N -0.288 5.288 24 N -0.311 5.311 25 C 0.230 3.770 26 H 0.042 0.958 27 H 0.064 0.936 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.064 0.936 31 H 0.042 0.958 32 H 0.262 0.738 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.186 0.814 36 H 0.224 0.776 37 H 0.229 0.771 38 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.395 8.655 22.305 25.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.063 3.937 3 C -0.177 4.177 4 C -0.574 4.574 5 H 0.063 0.937 6 C -0.168 4.168 7 N -0.534 5.534 8 Si 0.775 3.225 9 H -0.201 1.201 10 H -0.204 1.204 11 H -0.205 1.205 12 C 0.026 3.974 13 O -0.253 6.253 14 C 0.346 3.654 15 O -0.421 6.421 16 C -0.144 4.144 17 C 0.014 3.986 18 C -0.164 4.164 19 C -0.007 4.007 20 N -0.101 5.101 21 C 0.036 3.964 22 O -0.221 6.221 23 N -0.136 5.136 24 N -0.156 5.156 25 C -0.024 4.024 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.036 0.964 29 H 0.035 0.965 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.204 0.796 36 H 0.240 0.760 37 H 0.246 0.754 38 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -6.827 7.448 22.341 24.520 hybrid contribution -0.308 -0.348 -0.906 1.018 sum -7.136 7.101 21.435 23.681 Atomic orbital electron populations 1.21626 0.96604 0.98639 1.00786 1.18268 0.93960 0.93370 0.88078 1.21631 0.97639 0.97636 1.00782 1.21246 1.32274 1.12441 0.91406 0.93713 1.25423 0.94990 0.95567 1.00870 1.69921 1.36661 1.23080 1.23766 0.85663 0.78203 0.78674 0.80004 1.20148 1.20448 1.20482 1.23314 0.97543 0.95303 0.81281 1.86499 1.69369 1.55401 1.14059 1.20896 0.77650 0.81976 0.84843 1.90904 1.36376 1.26416 1.88385 1.18899 1.09073 1.01500 0.84888 1.22645 0.85391 0.87568 1.03008 1.21556 1.03143 1.03639 0.88021 1.22995 0.89369 0.84203 1.04089 1.44207 1.35679 1.22739 1.07462 1.21698 0.99762 0.91349 0.83630 1.85009 1.53468 1.73180 1.10436 1.74539 1.18872 1.17685 1.02486 1.74904 1.20002 1.17985 1.02666 1.22517 0.98934 0.93070 0.87898 0.93923 0.91701 0.96446 0.96504 0.91684 0.93945 0.92793 0.93548 0.93465 0.79646 0.75978 0.75441 0.70547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.41 8.11 71.98 0.58 -4.82 16 2 C 0.06 3.04 0.58 -52.93 -0.03 3.01 16 3 C -0.12 -5.44 8.11 71.98 0.58 -4.86 16 4 C -0.54 -28.74 8.01 25.60 0.21 -28.53 16 5 H 0.04 2.45 7.74 -2.91 -0.02 2.43 16 6 C 0.03 1.68 5.15 84.65 0.44 2.11 16 7 N -0.90 -47.57 9.35 21.45 0.20 -47.37 16 8 Si 0.95 42.62 29.54 68.60 2.03 44.65 16 9 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 12 C 0.10 4.43 4.27 71.98 0.31 4.73 16 13 O -0.34 -12.81 8.19 -57.40 -0.47 -13.28 16 14 C 0.50 18.97 7.90 70.13 0.55 19.52 16 15 O -0.53 -24.63 16.07 19.61 0.32 -24.31 16 16 C -0.14 -3.87 6.06 -18.63 -0.11 -3.99 16 17 C 0.04 0.58 9.71 22.84 0.22 0.80 16 18 C -0.14 -0.79 9.91 21.93 0.22 -0.58 16 19 C 0.11 0.82 10.93 83.27 0.91 1.73 16 20 N -0.41 -7.91 2.97 -462.32 -1.37 -9.29 16 21 C 0.34 7.34 9.41 179.66 1.69 9.03 16 22 O -0.42 -4.93 13.65 -90.31 -1.23 -6.16 16 23 N -0.29 -9.38 12.20 -173.36 -2.12 -11.50 16 24 N -0.31 -11.81 11.75 -51.49 -0.61 -12.42 16 25 C 0.23 6.94 7.75 135.69 1.05 7.99 16 26 H 0.04 1.66 7.68 -2.38 -0.02 1.64 16 27 H 0.06 3.22 6.07 -2.39 -0.01 3.21 16 28 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.06 3.24 6.07 -2.39 -0.01 3.22 16 31 H 0.04 1.66 7.68 -2.39 -0.02 1.64 16 32 H 0.26 13.28 8.31 -92.71 -0.77 12.51 16 33 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 34 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.19 2.36 7.66 -2.91 -0.02 2.33 16 36 H 0.22 -1.09 8.06 -2.91 -0.02 -1.11 16 37 H 0.23 -0.83 8.06 -2.91 -0.02 -0.85 16 38 H 0.43 -0.08 9.06 -74.06 -0.67 -0.76 16 Total: -1.00 -82.22 329.89 3.81 -78.41 By element: Atomic # 1 Polarization: -5.33 SS G_CDS: 0.44 Total: -4.88 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 6.62 Total: 6.15 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -3.89 Total: -80.57 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -1.39 Total: -43.75 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -82.22 3.81 -78.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766285716.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.001 kcal (2) G-P(sol) polarization free energy of solvation -82.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds