Wall clock time and date at job start Tue Mar 31 2020 08:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47201 * 1 3 3 C 1.17401 * 179.97438 * 2 1 4 4 C 1.47199 * 179.97438 * 222.59254 * 3 2 1 5 5 C 1.53000 * 109.47077 * 108.29514 * 4 3 2 6 6 C 1.52998 * 109.47089 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47304 * 180.02562 * 6 5 4 8 8 O 1.21293 * 119.99883 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00175 * 179.97438 * 7 6 5 10 10 C 1.40092 * 120.00162 * 183.93146 * 9 7 6 11 11 C 1.38707 * 120.07188 * 334.49145 * 10 9 7 12 12 C 1.38196 * 120.01787 * 179.97438 * 11 10 9 13 13 C 1.38545 * 120.17699 * 0.02562 * 12 11 10 14 14 F 1.35098 * 119.92369 * 179.97438 * 13 12 11 15 15 C 1.38345 * 120.15545 * 0.02562 * 13 12 11 16 16 C 1.38741 * 119.97705 * 359.97379 * 15 13 12 17 17 O 1.35770 * 120.08805 * 180.30517 * 16 15 13 18 18 C 1.34804 * 117.00369 * 354.37083 * 17 16 15 19 19 H 1.08005 * 119.99714 * 354.64172 * 18 17 16 20 20 C 1.38635 * 120.00296 * 174.63377 * 18 17 16 21 21 N 1.31567 * 119.99804 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99983 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.46982 * 90.00063 * 22 20 18 24 24 H 1.48496 * 109.47089 * 210.00145 * 22 20 18 25 25 H 1.48495 * 109.46805 * 330.00202 * 22 20 18 26 26 H 1.09004 * 109.46914 * 209.11515 * 1 2 3 27 27 H 1.09000 * 109.47328 * 329.10897 * 1 2 3 28 28 H 1.08997 * 109.47070 * 89.11527 * 1 2 3 29 29 H 1.09000 * 109.47194 * 348.29725 * 4 3 2 30 30 H 1.08997 * 109.46833 * 228.29322 * 4 3 2 31 31 H 1.09000 * 109.46936 * 60.00053 * 5 4 3 32 32 H 1.08997 * 109.47133 * 299.99624 * 5 4 3 33 33 H 1.08996 * 109.47356 * 59.99379 * 6 5 4 34 34 H 1.09008 * 109.47113 * 299.99902 * 6 5 4 35 35 H 0.97004 * 119.99771 * 3.92254 * 9 7 6 36 36 H 1.08002 * 119.99165 * 359.97438 * 11 10 9 37 37 H 1.08000 * 119.91081 * 180.02562 * 12 11 10 38 38 H 1.07995 * 120.01723 * 180.02562 * 15 13 12 39 39 H 0.97008 * 120.00077 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0017 0.0004 5 6 4.6281 0.4549 -1.3690 6 6 6.1580 0.4555 -1.3687 7 6 6.6605 0.9025 -2.7174 8 8 5.8723 1.1916 -3.5928 9 7 7.9855 0.9809 -2.9508 10 6 8.4530 1.4745 -4.1756 11 6 7.6578 1.3884 -5.3088 12 6 8.1199 1.8762 -6.5164 13 6 9.3774 2.4516 -6.5998 14 9 9.8242 2.9263 -7.7830 15 6 10.1771 2.5403 -5.4743 16 6 9.7196 2.0527 -4.2587 17 8 10.5000 2.1442 -3.1515 18 6 11.7525 2.6124 -3.3224 19 1 12.1229 2.8129 -4.3169 20 6 12.5650 2.8367 -2.2217 21 7 13.7872 3.2941 -2.3887 22 14 11.9244 2.4894 -0.5017 23 1 12.2342 1.0848 -0.1324 24 1 12.5755 3.4103 0.4643 25 1 10.4544 2.6969 -0.4697 26 1 -0.3633 -0.8979 0.5001 27 1 -0.3634 0.8819 0.5276 28 1 -0.3633 0.0159 -1.0275 29 1 4.4821 -1.0043 0.2090 30 1 4.4805 0.6857 0.7678 31 1 4.2640 1.4609 -1.5775 32 1 4.2655 -0.2291 -2.1363 33 1 6.5217 -0.5506 -1.1602 34 1 6.5210 1.1392 -0.6013 35 1 8.6155 0.6957 -2.2705 36 1 6.6772 0.9400 -5.2474 37 1 7.4991 1.8086 -7.3976 38 1 11.1568 2.9897 -5.5418 39 1 14.3559 3.4507 -1.6185 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767093067.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:32:15 Heat of formation + Delta-G solvation = -46.713442 kcal Electronic energy + Delta-G solvation = -23437.077804 eV Core-core repulsion = 19647.065178 eV Total energy + Delta-G solvation = -3790.012626 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.29921 -40.36501 -38.87133 -36.62769 -35.80443 -34.26924 -33.46534 -32.54023 -30.22438 -29.54744 -28.47248 -26.57116 -25.44686 -23.14970 -22.04742 -21.41730 -20.08685 -18.36180 -18.08125 -17.30310 -16.81948 -16.40281 -16.10371 -15.46283 -15.18991 -15.01360 -14.59660 -14.33738 -14.16131 -14.05186 -13.94005 -13.72425 -13.60649 -13.49499 -13.28937 -12.67363 -12.52655 -12.47744 -12.27962 -11.91201 -11.70088 -11.47929 -11.06990 -10.99098 -10.83243 -10.50492 -9.96954 -9.90693 -9.87193 -9.78442 -9.36560 -9.03682 -8.00570 -7.25552 -6.57479 -4.25096 1.67905 1.99094 2.50105 2.54549 2.78623 3.07924 3.10744 3.20825 3.31616 4.04266 4.05833 4.23003 4.46739 4.66855 4.83041 4.86559 4.91640 4.96575 5.19464 5.20587 5.30205 5.36093 5.38434 5.42674 5.47556 5.53957 5.67458 5.75450 5.88340 5.96145 6.05692 6.13026 6.40042 6.68838 6.79123 6.85952 6.94320 7.42849 7.48120 7.59455 7.72529 7.83996 8.33908 8.75245 9.29617 10.49650 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.012025 B = 0.003521 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.970029 B = 7950.947326 C =10147.332062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.201 4.201 3 C -0.182 4.182 4 C -0.008 4.008 5 C -0.098 4.098 6 C -0.141 4.141 7 C 0.508 3.492 8 O -0.532 6.532 9 N -0.651 5.651 10 C 0.060 3.940 11 C -0.065 4.065 12 C -0.221 4.221 13 C 0.127 3.873 14 F -0.149 7.149 15 C -0.245 4.245 16 C 0.162 3.838 17 O -0.210 6.210 18 C -0.392 4.392 19 H 0.109 0.891 20 C 0.066 3.934 21 N -0.871 5.871 22 Si 0.905 3.095 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.259 1.259 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.413 0.587 36 H 0.157 0.843 37 H 0.125 0.875 38 H 0.149 0.851 39 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.216 -7.199 4.910 19.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.201 4.201 3 C -0.182 4.182 4 C -0.045 4.045 5 C -0.136 4.136 6 C -0.181 4.181 7 C 0.296 3.704 8 O -0.410 6.410 9 N -0.294 5.294 10 C -0.034 4.034 11 C -0.085 4.085 12 C -0.241 4.241 13 C 0.107 3.893 14 F -0.128 7.128 15 C -0.265 4.265 16 C 0.107 3.893 17 O -0.114 6.114 18 C -0.467 4.467 19 H 0.126 0.874 20 C -0.139 4.139 21 N -0.508 5.508 22 Si 0.730 3.270 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.183 1.183 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.249 0.751 36 H 0.174 0.826 37 H 0.143 0.857 38 H 0.167 0.833 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.580 -6.953 4.658 19.470 hybrid contribution 0.618 0.043 0.784 1.000 sum -16.962 -6.910 5.442 19.107 Atomic orbital electron populations 1.18831 0.84801 1.02813 1.03016 1.22410 0.93978 1.02086 1.01602 1.22341 0.93660 1.00994 1.01184 1.18722 0.84431 1.02773 0.98532 1.21273 0.92782 1.03548 0.95977 1.21683 0.97400 1.03871 0.95157 1.20704 0.81755 0.77729 0.90184 1.90596 1.55340 1.49052 1.46018 1.43216 1.07439 1.62345 1.16432 1.16992 0.93381 1.06759 0.86314 1.21062 1.00208 0.98175 0.89097 1.20611 0.95837 1.08618 0.99016 1.17501 0.93413 0.97821 0.80579 1.91426 1.89680 1.86411 1.45259 1.20972 1.03410 1.10780 0.91386 1.18470 0.89550 0.94067 0.87176 1.83504 1.25087 1.74093 1.28740 1.20757 0.84265 1.44464 0.97185 0.87413 1.24483 0.94625 0.95285 0.99487 1.69645 1.06862 1.41754 1.32524 0.86201 0.80112 0.78695 0.82014 1.19644 1.20606 1.18320 0.90395 0.90350 0.90220 0.89506 0.89474 0.90638 0.90679 0.88423 0.88320 0.75132 0.82580 0.85749 0.83340 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.26 10.32 34.37 0.35 0.10 16 2 C -0.20 -2.12 14.13 -37.12 -0.52 -2.65 16 3 C -0.18 -2.00 13.34 -37.12 -0.50 -2.49 16 4 C -0.01 -0.07 5.70 -29.52 -0.17 -0.24 16 5 C -0.10 -0.99 4.46 -26.73 -0.12 -1.11 16 6 C -0.14 -1.39 5.70 -27.88 -0.16 -1.55 16 7 C 0.51 7.40 7.72 -10.99 -0.08 7.31 16 8 O -0.53 -9.21 12.90 5.55 0.07 -9.14 16 9 N -0.65 -10.48 5.28 -9.72 -0.05 -10.54 16 10 C 0.06 1.15 6.47 -83.45 -0.54 0.61 16 11 C -0.07 -1.19 8.79 -39.42 -0.35 -1.54 16 12 C -0.22 -3.96 10.02 -39.48 -0.40 -4.36 16 13 C 0.13 2.50 7.29 -39.43 -0.29 2.21 16 14 F -0.15 -2.86 17.26 2.25 0.04 -2.82 16 15 C -0.24 -5.27 9.11 -39.36 -0.36 -5.63 16 16 C 0.16 3.52 6.66 -38.94 -0.26 3.26 16 17 O -0.21 -4.97 8.01 0.06 0.00 -4.97 16 18 C -0.39 -10.29 9.90 30.88 0.31 -9.99 16 19 H 0.11 2.96 5.52 -52.48 -0.29 2.67 16 20 C 0.07 1.72 5.49 -17.52 -0.10 1.63 16 21 N -0.87 -23.93 13.96 55.48 0.77 -23.16 16 22 Si 0.90 19.66 28.62 -169.99 -4.86 14.79 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 26 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 32 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 0.84 8.14 -51.92 -0.42 0.42 16 35 H 0.41 6.02 8.36 -40.82 -0.34 5.68 16 36 H 0.16 2.76 5.52 -52.49 -0.29 2.47 16 37 H 0.12 1.93 8.06 -52.49 -0.42 1.50 16 38 H 0.15 3.36 5.71 -52.49 -0.30 3.06 16 39 H 0.28 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 347.16 15.07 5.23 5.23 Total: -1.00 -30.28 347.16 -6.55 -36.83 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -4.58 Total: 8.20 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -3.17 Total: -14.44 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.72 Total: -33.69 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.07 Total: -14.11 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.86 Total: 14.79 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.28 -6.55 -36.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767093067.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.882 kcal (2) G-P(sol) polarization free energy of solvation -30.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds