Wall clock time and date at job start Tue Mar 31 2020 08:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47201 * 1 3 3 C 1.17401 * 179.97438 * 2 1 4 4 C 1.47199 * 179.97438 * 222.59254 * 3 2 1 5 5 C 1.53000 * 109.47077 * 108.29514 * 4 3 2 6 6 C 1.52998 * 109.47089 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47304 * 180.02562 * 6 5 4 8 8 O 1.21293 * 119.99883 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00175 * 179.97438 * 7 6 5 10 10 C 1.40092 * 120.00162 * 183.93146 * 9 7 6 11 11 C 1.38707 * 120.07188 * 334.49145 * 10 9 7 12 12 C 1.38196 * 120.01787 * 179.97438 * 11 10 9 13 13 C 1.38545 * 120.17699 * 0.02562 * 12 11 10 14 14 F 1.35098 * 119.92369 * 179.97438 * 13 12 11 15 15 C 1.38345 * 120.15545 * 0.02562 * 13 12 11 16 16 C 1.38741 * 119.97705 * 359.97379 * 15 13 12 17 17 O 1.35770 * 120.08805 * 180.30517 * 16 15 13 18 18 C 1.34804 * 117.00369 * 354.37083 * 17 16 15 19 19 H 1.08005 * 119.99714 * 354.64172 * 18 17 16 20 20 C 1.38635 * 120.00296 * 174.63377 * 18 17 16 21 21 N 1.31567 * 119.99804 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99983 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.46982 * 90.00063 * 22 20 18 24 24 H 1.48496 * 109.47089 * 210.00145 * 22 20 18 25 25 H 1.48495 * 109.46805 * 330.00202 * 22 20 18 26 26 H 1.09004 * 109.46914 * 209.11515 * 1 2 3 27 27 H 1.09000 * 109.47328 * 329.10897 * 1 2 3 28 28 H 1.08997 * 109.47070 * 89.11527 * 1 2 3 29 29 H 1.09000 * 109.47194 * 348.29725 * 4 3 2 30 30 H 1.08997 * 109.46833 * 228.29322 * 4 3 2 31 31 H 1.09000 * 109.46936 * 60.00053 * 5 4 3 32 32 H 1.08997 * 109.47133 * 299.99624 * 5 4 3 33 33 H 1.08996 * 109.47356 * 59.99379 * 6 5 4 34 34 H 1.09008 * 109.47113 * 299.99902 * 6 5 4 35 35 H 0.97004 * 119.99771 * 3.92254 * 9 7 6 36 36 H 1.08002 * 119.99165 * 359.97438 * 11 10 9 37 37 H 1.08000 * 119.91081 * 180.02562 * 12 11 10 38 38 H 1.07995 * 120.01723 * 180.02562 * 15 13 12 39 39 H 0.97008 * 120.00077 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0017 0.0004 5 6 4.6281 0.4549 -1.3690 6 6 6.1580 0.4555 -1.3687 7 6 6.6605 0.9025 -2.7174 8 8 5.8723 1.1916 -3.5928 9 7 7.9855 0.9809 -2.9508 10 6 8.4530 1.4745 -4.1756 11 6 7.6578 1.3884 -5.3088 12 6 8.1199 1.8762 -6.5164 13 6 9.3774 2.4516 -6.5998 14 9 9.8242 2.9263 -7.7830 15 6 10.1771 2.5403 -5.4743 16 6 9.7196 2.0527 -4.2587 17 8 10.5000 2.1442 -3.1515 18 6 11.7525 2.6124 -3.3224 19 1 12.1229 2.8129 -4.3169 20 6 12.5650 2.8367 -2.2217 21 7 13.7872 3.2941 -2.3887 22 14 11.9244 2.4894 -0.5017 23 1 12.2342 1.0848 -0.1324 24 1 12.5755 3.4103 0.4643 25 1 10.4544 2.6969 -0.4697 26 1 -0.3633 -0.8979 0.5001 27 1 -0.3634 0.8819 0.5276 28 1 -0.3633 0.0159 -1.0275 29 1 4.4821 -1.0043 0.2090 30 1 4.4805 0.6857 0.7678 31 1 4.2640 1.4609 -1.5775 32 1 4.2655 -0.2291 -2.1363 33 1 6.5217 -0.5506 -1.1602 34 1 6.5210 1.1392 -0.6013 35 1 8.6155 0.6957 -2.2705 36 1 6.6772 0.9400 -5.2474 37 1 7.4991 1.8086 -7.3976 38 1 11.1568 2.9897 -5.5418 39 1 14.3559 3.4507 -1.6185 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767093067.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:32:15 Heat of formation + Delta-G solvation = -63.481780 kcal Electronic energy + Delta-G solvation = -23437.804934 eV Core-core repulsion = 19647.065178 eV Total energy + Delta-G solvation = -3790.739756 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.87447 -41.76796 -40.38179 -38.18481 -36.62902 -35.63444 -34.47417 -34.20106 -31.37961 -30.94821 -29.70761 -27.53107 -27.15453 -24.42949 -23.48299 -22.71438 -21.26360 -20.15501 -19.68682 -18.51576 -18.25806 -17.34574 -17.13435 -17.06346 -16.64120 -16.52562 -15.87558 -15.79752 -15.48822 -15.38708 -15.15883 -14.90755 -14.68440 -14.37852 -14.28307 -14.19247 -13.88356 -13.66121 -13.36368 -13.24808 -13.02047 -12.58518 -12.48157 -12.40011 -12.16389 -11.83179 -11.67100 -11.33331 -10.92958 -10.74210 -10.60478 -10.54947 -9.64532 -8.81725 -8.51437 -6.26453 0.12114 0.37756 1.35893 1.41207 1.54568 1.58620 1.73045 1.80574 2.11461 2.28020 2.61749 2.76865 2.99865 3.35782 3.39857 3.64820 3.91576 4.09097 4.10719 4.14013 4.26797 4.45861 4.58054 4.65374 4.72850 4.77123 4.82892 4.85751 4.88194 4.90851 5.10113 5.15782 5.16786 5.22829 5.29249 5.35191 5.45178 5.57898 5.81241 6.06422 6.47707 6.75404 6.79780 7.12323 7.41543 8.59396 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.012025 B = 0.003521 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.970029 B = 7950.947326 C =10147.332062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.219 4.219 3 C -0.214 4.214 4 C -0.004 4.004 5 C -0.091 4.091 6 C -0.131 4.131 7 C 0.507 3.493 8 O -0.560 6.560 9 N -0.653 5.653 10 C 0.074 3.926 11 C -0.068 4.068 12 C -0.194 4.194 13 C 0.114 3.886 14 F -0.147 7.147 15 C -0.257 4.257 16 C 0.136 3.864 17 O -0.218 6.218 18 C -0.403 4.403 19 H 0.077 0.923 20 C 0.011 3.989 21 N -0.920 5.920 22 Si 0.973 3.027 23 H -0.256 1.256 24 H -0.277 1.277 25 H -0.247 1.247 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.132 0.868 34 H 0.121 0.879 35 H 0.422 0.578 36 H 0.171 0.829 37 H 0.158 0.842 38 H 0.126 0.874 39 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.873 -8.662 6.474 22.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.219 4.219 3 C -0.214 4.214 4 C -0.040 4.040 5 C -0.129 4.129 6 C -0.170 4.170 7 C 0.298 3.702 8 O -0.440 6.440 9 N -0.297 5.297 10 C -0.022 4.022 11 C -0.088 4.088 12 C -0.214 4.214 13 C 0.094 3.906 14 F -0.126 7.126 15 C -0.278 4.278 16 C 0.084 3.916 17 O -0.124 6.124 18 C -0.479 4.479 19 H 0.094 0.906 20 C -0.188 4.188 21 N -0.560 5.560 22 Si 0.794 3.206 23 H -0.180 1.180 24 H -0.202 1.202 25 H -0.171 1.171 26 H 0.112 0.888 27 H 0.109 0.891 28 H 0.106 0.894 29 H 0.126 0.874 30 H 0.120 0.880 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.150 0.850 34 H 0.139 0.861 35 H 0.259 0.741 36 H 0.188 0.812 37 H 0.176 0.824 38 H 0.143 0.857 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.274 -8.435 6.206 22.819 hybrid contribution 1.225 0.468 0.074 1.313 sum -19.049 -7.967 6.280 21.582 Atomic orbital electron populations 1.19048 0.82768 1.04144 1.03956 1.23403 0.95451 1.01889 1.01184 1.23078 0.94895 1.01572 1.01845 1.18788 0.83213 1.04310 0.97712 1.21164 0.93000 1.02016 0.96719 1.21750 0.96803 1.06159 0.92295 1.21605 0.80638 0.76341 0.91610 1.90575 1.55791 1.50100 1.47485 1.43375 1.08454 1.62338 1.15543 1.17169 0.92109 1.04808 0.88079 1.21320 1.00500 0.98142 0.88802 1.21003 0.94770 1.05490 1.00135 1.17545 0.94046 0.98859 0.80154 1.91427 1.89798 1.86484 1.44900 1.20978 1.02973 1.11160 0.92647 1.18786 0.90686 0.95263 0.86849 1.83449 1.24090 1.75676 1.29224 1.20622 0.85791 1.45151 0.96305 0.90578 1.25394 0.94648 0.94930 1.03851 1.69749 1.08381 1.43883 1.33938 0.85183 0.79962 0.79204 0.76282 1.18038 1.20217 1.17062 0.88834 0.89142 0.89383 0.87422 0.87962 0.92760 0.91994 0.84998 0.86135 0.74120 0.81243 0.82424 0.85660 0.90423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.50 10.32 70.18 0.72 0.22 16 2 C -0.22 -4.34 14.13 31.13 0.44 -3.90 16 3 C -0.21 -4.35 13.34 31.12 0.42 -3.94 16 4 C 0.00 -0.06 5.70 28.79 0.16 0.11 16 5 C -0.09 -1.62 4.46 30.59 0.14 -1.48 16 6 C -0.13 -2.07 5.70 29.85 0.17 -1.90 16 7 C 0.51 13.37 7.72 87.66 0.68 14.05 16 8 O -0.56 -18.17 12.90 -3.07 -0.04 -18.21 16 9 N -0.65 -19.49 5.28 -303.04 -1.60 -21.09 16 10 C 0.07 2.73 6.47 38.23 0.25 2.98 16 11 C -0.07 -2.32 8.79 22.37 0.20 -2.12 16 12 C -0.19 -6.53 10.02 22.33 0.22 -6.31 16 13 C 0.11 4.44 7.29 22.37 0.16 4.60 16 14 F -0.15 -5.61 17.26 44.97 0.78 -4.84 16 15 C -0.26 -11.43 9.11 22.42 0.20 -11.22 16 16 C 0.14 5.98 6.66 22.69 0.15 6.13 16 17 O -0.22 -10.47 8.01 -22.70 -0.18 -10.65 16 18 C -0.40 -22.08 9.90 67.91 0.67 -21.40 16 19 H 0.08 4.52 5.52 -2.91 -0.02 4.50 16 20 C 0.01 0.59 5.49 84.83 0.47 1.06 16 21 N -0.92 -52.47 13.96 21.61 0.30 -52.17 16 22 Si 0.97 40.19 28.62 68.60 1.96 42.15 16 23 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 24 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 25 H -0.25 -9.59 7.11 99.48 0.71 -8.89 16 26 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 32 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 33 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.12 1.50 8.14 -2.38 -0.02 1.48 16 35 H 0.42 11.18 8.36 -92.71 -0.78 10.40 16 36 H 0.17 5.52 5.52 -2.91 -0.02 5.50 16 37 H 0.16 4.28 8.06 -2.91 -0.02 4.26 16 38 H 0.13 6.13 5.71 -2.91 -0.02 6.11 16 39 H 0.29 14.94 8.31 -92.70 -0.77 14.17 16 Total: -1.00 -68.31 347.16 6.60 -61.71 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 0.33 Total: 26.22 kcal Atomic # 6 Polarization: -28.18 SS G_CDS: 5.05 Total: -23.12 kcal Atomic # 7 Polarization: -71.96 SS G_CDS: -1.30 Total: -73.26 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.22 Total: -28.86 kcal Atomic # 9 Polarization: -5.61 SS G_CDS: 0.78 Total: -4.84 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 1.96 Total: 42.15 kcal Total: -68.31 6.60 -61.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767093067.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.772 kcal (2) G-P(sol) polarization free energy of solvation -68.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds