Wall clock time and date at job start Tue Mar 31 2020 08:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 119.99953 * 2 1 4 4 C 1.52999 * 109.47320 * 125.00064 * 3 2 1 5 5 C 1.52994 * 109.47146 * 180.02562 * 4 3 2 6 6 C 1.53009 * 109.47022 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.46715 * 179.97438 * 6 5 4 8 8 C 1.34783 * 119.99450 * 179.97438 * 7 6 5 9 9 O 1.21606 * 120.00135 * 0.02562 * 8 7 6 10 10 C 1.47433 * 119.99777 * 179.97438 * 8 7 6 11 11 C 1.39678 * 120.21285 * 359.97438 * 10 8 7 12 12 C 1.37809 * 119.93418 * 180.02562 * 11 10 8 13 13 C 1.38660 * 120.38295 * 0.02562 * 12 11 10 14 14 C 1.37910 * 120.43889 * 0.02562 * 13 12 11 15 15 C 1.39110 * 120.04977 * 359.97438 * 14 13 12 16 16 S 1.76195 * 120.19106 * 180.02562 * 15 14 13 17 17 C 1.76205 * 99.99901 * 6.85682 * 16 15 14 18 18 H 1.08005 * 119.99976 * 5.65159 * 17 16 15 19 19 C 1.38804 * 120.00248 * 185.65626 * 17 16 15 20 20 N 1.31554 * 120.00297 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 119.99901 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.46956 * 89.99761 * 21 19 17 23 23 H 1.48501 * 109.46925 * 210.00084 * 21 19 17 24 24 H 1.48502 * 109.47012 * 329.99898 * 21 19 17 25 25 H 1.07995 * 120.00172 * 0.02562 * 1 2 3 26 26 H 1.08005 * 119.99866 * 179.97438 * 1 2 3 27 27 H 1.08005 * 119.99896 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47499 * 4.99629 * 3 2 1 29 29 H 1.09003 * 109.47096 * 244.99668 * 3 2 1 30 30 H 1.09005 * 109.47122 * 59.99717 * 4 3 2 31 31 H 1.09003 * 109.46712 * 299.99839 * 4 3 2 32 32 H 1.08997 * 109.47730 * 59.99530 * 5 4 3 33 33 H 1.09003 * 109.47040 * 299.99462 * 5 4 3 34 34 H 1.09000 * 109.47420 * 59.99996 * 6 5 4 35 35 H 1.09003 * 109.46801 * 299.99642 * 6 5 4 36 36 H 0.97003 * 120.00826 * 359.97438 * 7 6 5 37 37 H 1.07994 * 120.03669 * 0.27820 * 11 10 8 38 38 H 1.08006 * 119.80802 * 179.97438 * 12 11 10 39 39 H 1.08007 * 119.77539 * 180.02562 * 13 12 11 40 40 H 1.07997 * 119.97290 * 179.97438 * 14 13 12 41 41 H 0.96996 * 120.00115 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7995 2.6584 1.1819 6 6 4.7706 2.6866 2.3640 7 7 5.5031 3.9554 2.3639 8 6 6.4191 4.2047 3.3206 9 8 6.6379 3.3763 4.1836 10 6 7.1566 5.4813 3.3203 11 6 6.9100 6.4352 2.3303 12 6 7.6031 7.6263 2.3351 13 6 8.5463 7.8849 3.3180 14 6 8.8030 6.9536 4.3023 15 6 8.1139 5.7453 4.3148 16 16 8.4384 4.5531 5.5709 17 6 9.5197 5.4843 6.6045 18 1 9.7054 6.5268 6.3916 19 6 10.1330 4.8782 7.6922 20 7 10.9408 5.5733 8.4636 21 14 9.8125 3.0749 8.0599 22 1 10.8115 2.2392 7.3467 23 1 9.9243 2.8404 9.5220 24 1 8.4469 2.7117 7.6033 25 1 -0.5400 0.9352 -0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6213 1.4026 -0.9314 30 1 3.7400 0.5065 1.0921 31 1 2.4772 1.2356 2.1130 32 1 3.0944 3.4847 1.2716 33 1 4.3573 2.7563 0.2506 34 1 5.4759 1.8604 2.2747 35 1 4.2125 2.5889 3.2951 36 1 5.3288 4.6161 1.6753 37 1 6.1740 6.2414 1.5641 38 1 7.4110 8.3624 1.5684 39 1 9.0835 8.8218 3.3127 40 1 9.5395 7.1626 5.0640 41 1 11.3690 5.1498 9.2239 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771554985.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:32:22 Heat of formation + Delta-G solvation = -7.493107 kcal Electronic energy + Delta-G solvation = -21213.282987 eV Core-core repulsion = 17991.184258 eV Total energy + Delta-G solvation = -3222.098729 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.61629 -37.69795 -36.81370 -34.88518 -32.70968 -32.56061 -30.68634 -30.37778 -28.16639 -25.90004 -24.35842 -22.71600 -22.00411 -21.52171 -20.09099 -20.08261 -18.27542 -17.12231 -16.24291 -15.94573 -15.76962 -15.34598 -15.15568 -14.61663 -14.45479 -14.09073 -13.84649 -13.73206 -13.38461 -13.15542 -12.76374 -12.51342 -12.30839 -12.05582 -11.88543 -11.62988 -11.41220 -11.29717 -11.18001 -11.15130 -10.89983 -10.85645 -10.50316 -9.81328 -9.69845 -9.64352 -9.45300 -8.87028 -8.83062 -8.41367 -8.21573 -6.79610 -6.47421 -4.18517 1.42475 1.91718 1.93837 2.87465 3.21221 3.37396 3.41045 3.42375 3.49434 4.15794 4.39563 4.43770 4.62952 4.64572 4.67484 4.85387 4.95679 5.08214 5.14222 5.17929 5.25797 5.34737 5.47514 5.51078 5.52558 5.56204 5.66657 5.80217 5.91180 5.99776 6.04537 6.08666 6.26799 6.28849 6.42700 6.50230 6.66704 6.75760 6.96309 7.06017 7.45727 7.75901 7.81016 8.34878 8.67675 8.96753 10.59758 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.015912 B = 0.003120 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.277967 B = 8972.395581 C =10649.906453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.152 4.152 3 C -0.095 4.095 4 C -0.113 4.113 5 C -0.131 4.131 6 C 0.122 3.878 7 N -0.738 5.738 8 C 0.553 3.447 9 O -0.513 6.513 10 C -0.172 4.172 11 C -0.065 4.065 12 C -0.178 4.178 13 C -0.077 4.077 14 C -0.144 4.144 15 C -0.031 4.031 16 S 0.086 5.914 17 C -0.579 4.579 18 H 0.106 0.894 19 C 0.103 3.897 20 N -0.863 5.863 21 Si 0.850 3.150 22 H -0.263 1.263 23 H -0.269 1.269 24 H -0.234 1.234 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.395 0.605 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.147 0.853 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.407 -4.305 -17.318 23.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.170 4.170 3 C -0.132 4.132 4 C -0.151 4.151 5 C -0.169 4.169 6 C -0.002 4.002 7 N -0.393 5.393 8 C 0.342 3.658 9 O -0.390 6.390 10 C -0.187 4.187 11 C -0.086 4.086 12 C -0.201 4.201 13 C -0.099 4.099 14 C -0.169 4.169 15 C -0.150 4.150 16 S 0.347 5.653 17 C -0.725 4.725 18 H 0.123 0.877 19 C -0.108 4.108 20 N -0.496 5.496 21 Si 0.674 3.326 22 H -0.188 1.188 23 H -0.194 1.194 24 H -0.158 1.158 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.126 0.874 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.230 0.770 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.164 0.836 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.391 -6.267 -16.049 23.103 hybrid contribution 0.421 1.020 -0.216 1.124 sum -14.970 -5.247 -16.265 22.720 Atomic orbital electron populations 1.23860 0.96025 1.01798 1.01829 1.23005 0.96057 0.98675 0.99312 1.20782 0.98207 0.95313 0.98901 1.21447 0.97848 0.97239 0.98538 1.21810 0.98187 0.98447 0.98427 1.21266 0.94091 0.86453 0.98408 1.45849 1.42195 1.19856 1.31358 1.18295 0.79335 0.87016 0.81173 1.90760 1.64986 1.47087 1.36164 1.19188 1.03092 0.96012 1.00381 1.20898 0.97971 0.93445 0.96250 1.20725 1.00613 0.97817 1.00984 1.21144 0.96463 0.98314 0.93951 1.21577 1.01640 0.93301 1.00386 1.22532 0.95632 0.99171 0.97652 1.84133 1.50080 1.15539 1.15557 1.23533 1.32377 1.01687 1.14952 0.87670 1.24807 0.92882 0.98623 0.94495 1.69908 1.26785 1.37175 1.15766 0.86872 0.82009 0.84587 0.79168 1.18752 1.19391 1.15776 0.88640 0.88638 0.87404 0.91475 0.90934 0.91395 0.91433 0.91317 0.91284 0.91672 0.91655 0.77007 0.86944 0.86782 0.86605 0.83615 0.91538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.30 14.32 29.01 0.42 -0.88 16 2 C -0.15 -1.04 9.52 -36.03 -0.34 -1.38 16 3 C -0.09 -0.61 5.66 -27.88 -0.16 -0.77 16 4 C -0.11 -0.82 5.20 -26.73 -0.14 -0.95 16 5 C -0.13 -1.01 5.33 -26.73 -0.14 -1.16 16 6 C 0.12 1.40 5.67 -4.04 -0.02 1.38 16 7 N -0.74 -9.85 5.51 -61.37 -0.34 -10.19 16 8 C 0.55 10.29 7.75 -12.51 -0.10 10.19 16 9 O -0.51 -11.52 13.77 5.27 0.07 -11.44 16 10 C -0.17 -3.29 5.89 -104.75 -0.62 -3.91 16 11 C -0.07 -0.99 9.53 -39.20 -0.37 -1.36 16 12 C -0.18 -2.62 10.02 -39.58 -0.40 -3.02 16 13 C -0.08 -1.29 10.03 -39.55 -0.40 -1.69 16 14 C -0.14 -3.02 9.22 -39.38 -0.36 -3.39 16 15 C -0.03 -0.69 6.14 -38.39 -0.24 -0.93 16 16 S 0.09 2.21 16.53 -107.50 -1.78 0.43 16 17 C -0.58 -16.37 9.54 30.94 0.30 -16.08 16 18 H 0.11 3.06 5.21 -52.48 -0.27 2.79 16 19 C 0.10 2.93 5.50 -17.46 -0.10 2.83 16 20 N -0.86 -25.25 13.96 55.49 0.77 -24.47 16 21 Si 0.85 21.05 27.74 -169.99 -4.71 16.34 16 22 H -0.26 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.23 -5.82 6.74 56.52 0.38 -5.44 16 25 H 0.10 0.58 7.84 -52.49 -0.41 0.16 16 26 H 0.10 0.54 8.06 -52.48 -0.42 0.12 16 27 H 0.11 0.68 8.06 -52.48 -0.42 0.26 16 28 H 0.07 0.42 7.79 -51.93 -0.40 0.01 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.40 4.07 6.50 -40.82 -0.27 3.80 16 37 H 0.11 1.23 6.40 -52.49 -0.34 0.90 16 38 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 39 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 40 H 0.15 3.32 5.04 -52.49 -0.26 3.06 16 41 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 354.11 15.07 5.34 5.34 Total: -1.00 -32.06 354.11 -9.08 -41.14 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -5.76 Total: 3.98 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -2.67 Total: -21.12 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.44 Total: -34.66 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.07 Total: -11.44 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.71 Total: 16.34 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -1.78 Total: 0.43 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.06 -9.08 -41.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771554985.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.650 kcal (2) G-P(sol) polarization free energy of solvation -32.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds