Wall clock time and date at job start Tue Mar 31 2020 08:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 119.99953 * 2 1 4 4 C 1.52999 * 109.47320 * 125.00064 * 3 2 1 5 5 C 1.52994 * 109.47146 * 180.02562 * 4 3 2 6 6 C 1.53009 * 109.47022 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.46715 * 179.97438 * 6 5 4 8 8 C 1.34783 * 119.99450 * 179.97438 * 7 6 5 9 9 O 1.21606 * 120.00135 * 0.02562 * 8 7 6 10 10 C 1.47433 * 119.99777 * 179.97438 * 8 7 6 11 11 C 1.39678 * 120.21285 * 359.97438 * 10 8 7 12 12 C 1.37809 * 119.93418 * 180.02562 * 11 10 8 13 13 C 1.38660 * 120.38295 * 0.02562 * 12 11 10 14 14 C 1.37910 * 120.43889 * 0.02562 * 13 12 11 15 15 C 1.39110 * 120.04977 * 359.97438 * 14 13 12 16 16 S 1.76195 * 120.19106 * 180.02562 * 15 14 13 17 17 C 1.76205 * 99.99901 * 6.85682 * 16 15 14 18 18 H 1.08005 * 119.99976 * 5.65159 * 17 16 15 19 19 C 1.38804 * 120.00248 * 185.65626 * 17 16 15 20 20 N 1.31554 * 120.00297 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 119.99901 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.46956 * 89.99761 * 21 19 17 23 23 H 1.48501 * 109.46925 * 210.00084 * 21 19 17 24 24 H 1.48502 * 109.47012 * 329.99898 * 21 19 17 25 25 H 1.07995 * 120.00172 * 0.02562 * 1 2 3 26 26 H 1.08005 * 119.99866 * 179.97438 * 1 2 3 27 27 H 1.08005 * 119.99896 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47499 * 4.99629 * 3 2 1 29 29 H 1.09003 * 109.47096 * 244.99668 * 3 2 1 30 30 H 1.09005 * 109.47122 * 59.99717 * 4 3 2 31 31 H 1.09003 * 109.46712 * 299.99839 * 4 3 2 32 32 H 1.08997 * 109.47730 * 59.99530 * 5 4 3 33 33 H 1.09003 * 109.47040 * 299.99462 * 5 4 3 34 34 H 1.09000 * 109.47420 * 59.99996 * 6 5 4 35 35 H 1.09003 * 109.46801 * 299.99642 * 6 5 4 36 36 H 0.97003 * 120.00826 * 359.97438 * 7 6 5 37 37 H 1.07994 * 120.03669 * 0.27820 * 11 10 8 38 38 H 1.08006 * 119.80802 * 179.97438 * 12 11 10 39 39 H 1.08007 * 119.77539 * 180.02562 * 13 12 11 40 40 H 1.07997 * 119.97290 * 179.97438 * 14 13 12 41 41 H 0.96996 * 120.00115 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7995 2.6584 1.1819 6 6 4.7706 2.6866 2.3640 7 7 5.5031 3.9554 2.3639 8 6 6.4191 4.2047 3.3206 9 8 6.6379 3.3763 4.1836 10 6 7.1566 5.4813 3.3203 11 6 6.9100 6.4352 2.3303 12 6 7.6031 7.6263 2.3351 13 6 8.5463 7.8849 3.3180 14 6 8.8030 6.9536 4.3023 15 6 8.1139 5.7453 4.3148 16 16 8.4384 4.5531 5.5709 17 6 9.5197 5.4843 6.6045 18 1 9.7054 6.5268 6.3916 19 6 10.1330 4.8782 7.6922 20 7 10.9408 5.5733 8.4636 21 14 9.8125 3.0749 8.0599 22 1 10.8115 2.2392 7.3467 23 1 9.9243 2.8404 9.5220 24 1 8.4469 2.7117 7.6033 25 1 -0.5400 0.9352 -0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6213 1.4026 -0.9314 30 1 3.7400 0.5065 1.0921 31 1 2.4772 1.2356 2.1130 32 1 3.0944 3.4847 1.2716 33 1 4.3573 2.7563 0.2506 34 1 5.4759 1.8604 2.2747 35 1 4.2125 2.5889 3.2951 36 1 5.3288 4.6161 1.6753 37 1 6.1740 6.2414 1.5641 38 1 7.4110 8.3624 1.5684 39 1 9.0835 8.8218 3.3127 40 1 9.5395 7.1626 5.0640 41 1 11.3690 5.1498 9.2239 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771554985.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:32:22 Heat of formation + Delta-G solvation = -27.314889 kcal Electronic energy + Delta-G solvation = -21214.142524 eV Core-core repulsion = 17991.184258 eV Total energy + Delta-G solvation = -3222.958266 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.03568 -39.08117 -37.57616 -35.87500 -34.82233 -33.48365 -31.97916 -31.84977 -28.98765 -27.98834 -25.39660 -23.92498 -23.36448 -22.29530 -21.48818 -20.59863 -19.97998 -18.70723 -17.53103 -17.11190 -17.03493 -16.91788 -16.19138 -15.96327 -15.50378 -15.47449 -15.26056 -14.97325 -14.59468 -14.28813 -14.06600 -13.67718 -13.59065 -13.35600 -13.12452 -13.06286 -12.88240 -12.49968 -12.34161 -12.26234 -12.04456 -11.72665 -11.52937 -11.47047 -11.38333 -11.31687 -10.58429 -10.17488 -10.15096 -10.04415 -9.79472 -8.67635 -8.59983 -6.31171 -0.03036 0.47201 1.00065 1.22604 1.40109 1.44258 1.63159 1.97971 2.14697 2.23076 2.67256 2.77356 2.98288 3.82869 3.86656 3.97904 4.04402 4.08441 4.23786 4.28936 4.48608 4.53351 4.57215 4.59456 4.70158 4.78310 4.82732 4.90553 4.95908 5.06095 5.10501 5.15987 5.35742 5.36077 5.43575 5.49140 5.53389 5.61628 5.66332 5.81013 5.93723 6.05346 6.16091 6.63056 6.83871 7.33151 8.51155 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.015912 B = 0.003120 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.277967 B = 8972.395581 C =10649.906453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.165 4.165 3 C -0.090 4.090 4 C -0.111 4.111 5 C -0.117 4.117 6 C 0.119 3.881 7 N -0.712 5.712 8 C 0.546 3.454 9 O -0.558 6.558 10 C -0.174 4.174 11 C -0.053 4.053 12 C -0.147 4.147 13 C -0.072 4.072 14 C -0.170 4.170 15 C -0.057 4.057 16 S 0.020 5.980 17 C -0.585 4.585 18 H 0.080 0.920 19 C 0.053 3.947 20 N -0.907 5.907 21 Si 0.907 3.093 22 H -0.258 1.258 23 H -0.252 1.252 24 H -0.241 1.241 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.109 0.891 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.415 0.585 37 H 0.169 0.831 38 H 0.170 0.830 39 H 0.147 0.853 40 H 0.112 0.888 41 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.967 -3.345 -21.544 28.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.183 4.183 3 C -0.127 4.127 4 C -0.149 4.149 5 C -0.154 4.154 6 C -0.005 4.005 7 N -0.366 5.366 8 C 0.334 3.666 9 O -0.439 6.439 10 C -0.187 4.187 11 C -0.073 4.073 12 C -0.169 4.169 13 C -0.093 4.093 14 C -0.195 4.195 15 C -0.174 4.174 16 S 0.276 5.724 17 C -0.731 4.731 18 H 0.097 0.903 19 C -0.154 4.154 20 N -0.543 5.543 21 Si 0.728 3.272 22 H -0.182 1.182 23 H -0.176 1.176 24 H -0.165 1.165 25 H 0.119 0.881 26 H 0.119 0.881 27 H 0.127 0.873 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.253 0.747 37 H 0.186 0.814 38 H 0.188 0.812 39 H 0.165 0.835 40 H 0.130 0.870 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.004 -5.246 -20.383 27.697 hybrid contribution 1.016 0.930 0.707 1.548 sum -16.987 -4.316 -19.677 26.351 Atomic orbital electron populations 1.24012 0.96119 1.02378 1.01397 1.23132 0.96335 0.99071 0.99723 1.20745 0.98050 0.95248 0.98702 1.21417 0.97882 0.96949 0.98688 1.21729 0.97513 0.99162 0.97032 1.21412 0.94236 0.85072 0.99753 1.45649 1.40160 1.20782 1.29984 1.18446 0.80023 0.86508 0.81591 1.90744 1.66494 1.48375 1.38291 1.19563 1.01736 0.97272 1.00110 1.21507 0.98191 0.92080 0.95537 1.21404 0.97303 0.98160 1.00070 1.21551 0.96761 0.98249 0.92742 1.21459 1.02013 0.94435 1.01620 1.22543 0.97936 0.98777 0.98121 1.84046 1.52157 1.17697 1.18531 1.23643 1.32661 1.01033 1.15797 0.90258 1.25588 0.92887 1.02457 0.94444 1.69984 1.28607 1.38853 1.16843 0.86019 0.81441 0.80037 0.79686 1.18209 1.17604 1.16518 0.88140 0.88130 0.87326 0.90937 0.90077 0.91725 0.92265 0.89858 0.89595 0.92892 0.93089 0.74702 0.81391 0.81214 0.83548 0.87049 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.29 14.32 67.78 0.97 -1.32 16 2 C -0.16 -1.95 9.52 25.65 0.24 -1.70 16 3 C -0.09 -0.92 5.66 29.85 0.17 -0.75 16 4 C -0.11 -1.35 5.20 30.59 0.16 -1.19 16 5 C -0.12 -1.39 5.33 30.60 0.16 -1.23 16 6 C 0.12 2.50 5.67 86.38 0.49 2.99 16 7 N -0.71 -16.74 5.51 -466.34 -2.57 -19.31 16 8 C 0.55 19.66 7.75 86.66 0.67 20.33 16 9 O -0.56 -25.69 13.77 -4.05 -0.06 -25.74 16 10 C -0.17 -6.31 5.89 -19.95 -0.12 -6.43 16 11 C -0.05 -1.30 9.53 22.52 0.21 -1.09 16 12 C -0.15 -3.40 10.02 22.27 0.22 -3.18 16 13 C -0.07 -2.21 10.03 22.29 0.22 -1.98 16 14 C -0.17 -7.29 9.22 22.40 0.21 -7.08 16 15 C -0.06 -2.60 6.14 23.04 0.14 -2.46 16 16 S 0.02 1.10 16.53 -56.49 -0.93 0.17 16 17 C -0.58 -35.55 9.54 67.96 0.65 -34.90 16 18 H 0.08 5.06 5.21 -2.91 -0.02 5.04 16 19 C 0.05 3.18 5.50 84.87 0.47 3.64 16 20 N -0.91 -56.07 13.96 21.65 0.30 -55.77 16 21 Si 0.91 45.90 27.74 68.60 1.90 47.80 16 22 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.25 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.24 -12.37 6.74 99.48 0.67 -11.70 16 25 H 0.10 1.01 7.84 -2.91 -0.02 0.98 16 26 H 0.10 0.99 8.06 -2.91 -0.02 0.97 16 27 H 0.11 1.22 8.06 -2.91 -0.02 1.20 16 28 H 0.07 0.67 7.79 -2.39 -0.02 0.65 16 29 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.41 6.26 6.50 -92.71 -0.60 5.66 16 37 H 0.17 2.28 6.40 -2.91 -0.02 2.26 16 38 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 39 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 40 H 0.11 5.52 5.04 -2.91 -0.01 5.50 16 41 H 0.28 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -78.32 354.11 3.91 -74.41 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.39 Total: 14.80 kcal Atomic # 6 Polarization: -41.22 SS G_CDS: 4.87 Total: -36.35 kcal Atomic # 7 Polarization: -72.81 SS G_CDS: -2.27 Total: -75.08 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.06 Total: -25.74 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.90 Total: 47.80 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -0.93 Total: 0.17 kcal Total: -78.32 3.91 -74.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771554985.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.093 kcal (2) G-P(sol) polarization free energy of solvation -78.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds