Wall clock time and date at job start Tue Mar 31 2020 08:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46569 * 2 1 4 4 C 1.52994 * 113.28359 * 46.93460 * 3 2 1 5 5 C 1.53494 * 114.20226 * 180.02562 * 3 2 1 6 6 N 1.47067 * 87.98944 * 87.71353 * 5 3 2 7 7 C 1.34777 * 136.06203 * 207.08294 * 6 5 3 8 8 O 1.21615 * 119.99695 * 354.96330 * 7 6 5 9 9 C 1.47427 * 120.00078 * 174.95711 * 7 6 5 10 10 C 1.39676 * 120.21422 * 33.89885 * 9 7 6 11 11 C 1.37802 * 119.93726 * 180.02562 * 10 9 7 12 12 C 1.38656 * 120.38306 * 0.02562 * 11 10 9 13 13 C 1.37909 * 120.43519 * 359.69396 * 12 11 10 14 14 C 1.39102 * 120.05275 * 0.56086 * 13 12 11 15 15 S 1.76208 * 120.19314 * 179.74161 * 14 13 12 16 16 C 1.76198 * 99.99610 * 7.46619 * 15 14 13 17 17 H 1.08007 * 120.00295 * 355.13449 * 16 15 14 18 18 C 1.38805 * 119.99678 * 174.85659 * 16 15 14 19 19 N 1.31547 * 120.00384 * 0.27907 * 18 16 15 20 20 Si 1.86804 * 119.99782 * 180.27328 * 18 16 15 21 21 H 1.48503 * 109.46983 * 60.00478 * 20 18 16 22 22 H 1.48500 * 109.47062 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47415 * 300.00336 * 20 18 16 24 24 C 1.47072 * 87.88091 * 27.34317 * 6 5 3 25 25 H 1.09006 * 109.47112 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47678 * 300.00179 * 1 2 3 27 27 H 1.09003 * 109.47606 * 60.00379 * 1 2 3 28 28 H 1.08999 * 109.47021 * 240.00069 * 2 1 3 29 29 H 1.08995 * 109.47004 * 119.99475 * 2 1 3 30 30 H 1.09006 * 109.46666 * 193.06648 * 4 3 2 31 31 H 1.09000 * 109.47337 * 313.05962 * 4 3 2 32 32 H 1.08997 * 109.47647 * 73.06432 * 4 3 2 33 33 H 1.09003 * 113.47199 * 332.93352 * 5 3 2 34 34 H 1.09000 * 113.46830 * 202.49388 * 5 3 2 35 35 H 1.08001 * 120.03308 * 359.97438 * 10 9 7 36 36 H 1.08008 * 119.80616 * 179.97438 * 11 10 9 37 37 H 1.08005 * 119.77907 * 179.97438 * 12 11 10 38 38 H 1.08008 * 119.97417 * 180.30188 * 13 12 11 39 39 H 0.96996 * 120.00452 * 180.02562 * 19 18 16 40 40 H 1.08998 * 113.47054 * 87.43951 * 24 6 5 41 41 H 1.09000 * 113.46045 * 217.88047 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.3366 2.3326 1.0267 5 6 3.5696 1.5694 -0.0006 6 7 3.5224 1.5069 -1.4692 7 6 4.3557 1.1092 -2.4510 8 8 5.4886 0.7582 -2.1819 9 6 3.8940 1.0996 -3.8510 10 6 2.9915 2.0664 -4.3001 11 6 2.5632 2.0518 -5.6098 12 6 3.0227 1.0813 -6.4871 13 6 3.9184 0.1228 -6.0618 14 6 4.3585 0.1174 -4.7423 15 16 5.4977 -1.1097 -4.1931 16 6 5.8847 -1.8778 -5.7310 17 1 5.3677 -1.5768 -6.6302 18 6 6.8581 -2.8657 -5.7877 19 7 7.4879 -3.2324 -4.6925 20 14 7.2739 -3.6746 -7.4194 21 1 7.7528 -2.6438 -8.3751 22 1 8.3383 -4.6891 -7.2119 23 1 6.0615 -4.3335 -7.9684 24 6 2.1680 2.0755 -1.3954 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.5708 3.3775 0.8227 31 1 0.2591 2.1822 0.9605 32 1 1.6789 2.0723 2.0283 33 1 4.0760 0.7179 0.4540 34 1 3.9261 2.5258 0.3819 35 1 2.6289 2.8243 -3.6214 36 1 1.8649 2.8002 -5.9548 37 1 2.6803 1.0787 -7.5114 38 1 4.2751 -0.6268 -6.7527 39 1 8.1683 -3.9224 -4.7322 40 1 2.1550 3.1653 -1.3806 41 1 1.4803 1.6551 -2.1292 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794545941.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:27:54 Heat of formation + Delta-G solvation = 25.088033 kcal Electronic energy + Delta-G solvation = -22611.367166 eV Core-core repulsion = 19390.681261 eV Total energy + Delta-G solvation = -3220.685904 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.66981 -38.50005 -37.06175 -33.66096 -32.75156 -30.95968 -30.31045 -29.63333 -26.83544 -26.07365 -25.82310 -23.94428 -22.49417 -21.93270 -19.53626 -18.50811 -17.85335 -16.86449 -16.13426 -15.76697 -15.58159 -15.09886 -14.84483 -14.54748 -14.30188 -13.96125 -13.63634 -13.16538 -12.96094 -12.90887 -12.66043 -12.43718 -12.12770 -11.98705 -11.90380 -11.60917 -11.55296 -11.19492 -11.17266 -11.00497 -10.95385 -10.72837 -10.32613 -10.17909 -9.78882 -9.56078 -9.40729 -8.74337 -8.52206 -8.34480 -8.19301 -6.52026 -6.45280 -4.16534 1.59276 2.01421 3.09492 3.12957 3.14919 3.18662 3.39132 3.41906 4.05144 4.09537 4.39679 4.60005 4.73888 4.95349 5.01205 5.05511 5.17898 5.20891 5.37193 5.39538 5.44416 5.48706 5.51594 5.58907 5.59541 5.70547 5.75660 5.80950 5.83817 5.98576 6.07166 6.11773 6.13950 6.19997 6.35740 6.38634 6.61289 6.87929 7.03665 7.13447 7.45037 7.59130 8.06901 8.16019 8.73328 8.99813 10.58733 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.018155 B = 0.004214 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.945514 B = 6643.136869 C = 7332.654164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C -0.100 4.100 4 C -0.137 4.137 5 C 0.112 3.888 6 N -0.645 5.645 7 C 0.589 3.411 8 O -0.509 6.509 9 C -0.163 4.163 10 C -0.064 4.064 11 C -0.185 4.185 12 C -0.077 4.077 13 C -0.154 4.154 14 C -0.049 4.049 15 S 0.132 5.868 16 C -0.578 4.578 17 H 0.093 0.907 18 C 0.082 3.918 19 N -0.859 5.859 20 Si 0.922 3.078 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.270 1.270 24 C 0.106 3.894 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.139 0.861 39 H 0.275 0.725 40 H 0.080 0.920 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.563 10.153 7.618 19.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.135 4.135 3 C -0.101 4.101 4 C -0.194 4.194 5 C -0.011 4.011 6 N -0.383 5.383 7 C 0.381 3.619 8 O -0.384 6.384 9 C -0.177 4.177 10 C -0.084 4.084 11 C -0.209 4.209 12 C -0.099 4.099 13 C -0.180 4.180 14 C -0.168 4.168 15 S 0.395 5.605 16 C -0.725 4.725 17 H 0.110 0.890 18 C -0.129 4.129 19 N -0.491 5.491 20 Si 0.747 3.253 21 H -0.194 1.194 22 H -0.205 1.205 23 H -0.195 1.195 24 C -0.017 4.017 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.157 0.843 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.912 9.171 8.844 18.139 hybrid contribution -0.185 -0.026 -2.346 2.353 sum -13.097 9.144 6.498 17.244 Atomic orbital electron populations 1.21818 0.95568 1.01673 1.01768 1.21216 0.95779 0.93564 1.02962 1.22313 0.95311 0.96813 0.95655 1.21727 1.00877 0.98579 0.98259 1.23001 0.94770 1.01937 0.81409 1.49454 1.17623 1.64526 1.06662 1.17916 0.83594 0.76495 0.83910 1.90850 1.17684 1.47183 1.82685 1.19054 1.05361 1.00600 0.92657 1.20973 0.94834 0.96758 0.95879 1.20645 1.04847 1.01439 0.94006 1.21080 0.95924 0.94225 0.98635 1.21405 0.99860 1.01064 0.95683 1.22943 0.99536 0.98677 0.95630 1.84269 1.40615 1.24385 1.11249 1.23678 1.26584 1.25772 0.96449 0.88984 1.25103 0.94159 0.95549 0.98119 1.69967 1.22921 1.28508 1.27722 0.86155 0.78475 0.78953 0.81706 1.19439 1.20529 1.19472 1.23205 0.84218 0.98056 0.96237 0.92733 0.92395 0.92639 0.91062 0.91440 0.92323 0.91482 0.92058 0.90539 0.90333 0.86979 0.87041 0.86956 0.84349 0.91485 0.90172 0.90239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.27 37.16 0.34 -0.93 16 2 C -0.10 -1.02 5.54 -26.73 -0.15 -1.17 16 3 C -0.10 -0.98 1.19 -153.86 -0.18 -1.16 16 4 C -0.14 -0.94 8.96 37.15 0.33 -0.61 16 5 C 0.11 1.40 7.78 -8.51 -0.07 1.33 16 6 N -0.65 -10.18 3.48 -186.28 -0.65 -10.83 16 7 C 0.59 12.32 7.47 -12.52 -0.09 12.22 16 8 O -0.51 -12.78 15.60 5.26 0.08 -12.69 16 9 C -0.16 -3.38 5.80 -104.75 -0.61 -3.99 16 10 C -0.06 -1.08 8.68 -39.20 -0.34 -1.42 16 11 C -0.18 -2.92 10.02 -39.59 -0.40 -3.32 16 12 C -0.08 -1.34 10.03 -39.55 -0.40 -1.73 16 13 C -0.15 -3.28 9.25 -39.38 -0.36 -3.65 16 14 C -0.05 -1.15 6.13 -38.40 -0.24 -1.38 16 15 S 0.13 3.63 19.16 -107.50 -2.06 1.58 16 16 C -0.58 -16.17 9.08 30.94 0.28 -15.88 16 17 H 0.09 2.42 4.84 -52.48 -0.25 2.17 16 18 C 0.08 2.26 5.49 -17.46 -0.10 2.17 16 19 N -0.86 -25.09 13.22 55.49 0.73 -24.35 16 20 Si 0.92 20.85 29.55 -169.99 -5.02 15.83 16 21 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 24 C 0.11 1.19 5.47 -8.37 -0.05 1.14 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.40 6.35 -51.93 -0.33 0.07 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.96 7.94 -51.93 -0.41 0.54 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.36 7.89 -51.93 -0.41 -0.05 16 31 H 0.07 0.41 5.96 -51.93 -0.31 0.10 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 1.04 8.12 -51.93 -0.42 0.62 16 34 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 35 H 0.11 1.54 6.25 -52.49 -0.33 1.21 16 36 H 0.11 1.40 8.06 -52.48 -0.42 0.97 16 37 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 38 H 0.14 3.04 4.97 -52.48 -0.26 2.78 16 39 H 0.28 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.08 0.73 7.93 -51.93 -0.41 0.32 16 41 H 0.08 0.90 7.55 -51.93 -0.39 0.51 16 LS Contribution 345.37 15.07 5.20 5.20 Total: -1.00 -32.95 345.37 -9.35 -42.29 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -5.62 Total: 1.36 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -2.01 Total: -18.38 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 0.08 Total: -35.18 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.08 Total: -12.69 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 3.63 SS G_CDS: -2.06 Total: 1.58 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.95 -9.35 -42.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794545941.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.381 kcal (2) G-P(sol) polarization free energy of solvation -32.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds