Wall clock time and date at job start Tue Mar 31 2020 08:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29764 * 125.11869 * 2 1 4 4 C 1.36319 * 108.66340 * 179.84145 * 3 2 1 5 5 C 1.43197 * 126.63512 * 180.16693 * 4 3 2 6 6 N 4.66753 * 151.63352 * 0.30107 * 2 1 3 7 7 C 1.38448 * 106.73839 * 0.41227 * 4 3 2 8 8 N 1.37929 * 126.73510 * 179.71715 * 7 4 3 9 9 C 1.46846 * 110.99871 * 55.81028 * 8 7 4 10 10 C 1.53037 * 109.52098 * 185.83823 * 9 8 7 11 11 C 1.53114 * 109.28200 * 300.82120 * 10 9 8 12 12 C 1.50696 * 109.52898 * 177.55971 * 11 10 9 13 13 O 1.21204 * 120.00152 * 240.32230 * 12 11 10 14 14 O 1.34316 * 119.99846 * 60.31402 * 12 11 10 15 15 C 1.34920 * 116.99847 * 180.02562 * 14 12 11 16 16 H 1.08005 * 120.00352 * 359.97438 * 15 14 12 17 17 C 1.38756 * 119.99843 * 179.97438 * 15 14 12 18 18 N 1.31439 * 119.99786 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00020 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47217 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46855 * 120.00378 * 19 17 15 22 22 H 1.48494 * 109.47574 * 240.00201 * 19 17 15 23 23 C 1.53125 * 109.16221 * 57.65407 * 11 10 9 24 24 C 1.46846 * 110.99889 * 180.02562 * 8 7 4 25 25 O 1.34294 * 125.11913 * 180.30695 * 2 1 3 26 26 H 1.09002 * 109.47152 * 269.69547 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.69648 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.69628 * 1 2 3 29 29 H 1.08993 * 109.45935 * 305.85093 * 9 8 7 30 30 H 1.08996 * 109.46181 * 65.82415 * 9 8 7 31 31 H 1.08997 * 109.50057 * 180.87658 * 10 9 8 32 32 H 1.09000 * 109.50437 * 60.76305 * 10 9 8 33 33 H 1.09004 * 109.52376 * 297.75116 * 11 10 9 34 34 H 0.97001 * 119.99776 * 179.97438 * 18 17 15 35 35 H 1.08998 * 109.50424 * 182.41155 * 23 11 10 36 36 H 1.09002 * 109.50054 * 62.28699 * 23 11 10 37 37 H 1.08999 * 109.46572 * 294.17503 * 24 8 7 38 38 H 1.09007 * 109.46507 * 54.14398 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2535 1.0614 0.0000 4 6 3.5609 0.6753 0.0036 5 6 4.7058 1.5352 0.0081 6 7 5.6141 2.2176 0.0117 7 6 3.5677 -0.7092 -0.0037 8 7 4.6772 -1.5286 -0.0088 9 6 5.5589 -1.2276 1.1263 10 6 6.8436 -2.0508 1.0082 11 6 6.4900 -3.5405 0.9936 12 6 7.7458 -4.3546 0.8173 13 8 7.8648 -5.0851 -0.1425 14 8 8.7334 -4.2706 1.7238 15 6 9.8305 -5.0252 1.5061 16 1 9.8851 -5.6597 0.6338 17 6 10.8886 -4.9860 2.4028 18 7 10.8219 -4.2141 3.4646 19 14 12.4072 -6.0312 2.1018 20 1 12.2342 -6.8058 0.8467 21 1 13.5974 -5.1515 1.9801 22 1 12.5975 -6.9669 3.2391 23 6 5.5327 -3.8185 -0.1687 24 6 4.2860 -2.9440 -0.0166 25 8 2.2796 -1.0984 -0.0059 26 1 -0.3633 -0.0055 1.0277 27 1 -0.3633 -0.8873 -0.5185 28 1 -0.3633 0.8927 -0.5091 29 1 5.8061 -0.1661 1.1225 30 1 5.0509 -1.4788 2.0573 31 1 7.4911 -1.8387 1.8590 32 1 7.3592 -1.7901 0.0840 33 1 6.0091 -3.8100 1.9340 34 1 11.5614 -4.1870 4.0917 35 1 5.2435 -4.8693 -0.1586 36 1 6.0277 -3.5855 -1.1115 37 1 3.7839 -3.1873 0.9198 38 1 3.6086 -3.1290 -0.8504 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796280827.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:45 Heat of formation + Delta-G solvation = -22.830598 kcal Electronic energy + Delta-G solvation = -24413.962580 eV Core-core repulsion = 20644.905553 eV Total energy + Delta-G solvation = -3769.057027 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.71628 -39.95992 -38.62152 -36.84807 -35.45682 -35.08284 -33.93940 -32.19812 -31.73261 -31.15155 -27.91960 -26.26945 -24.94487 -23.87272 -23.07456 -21.74046 -20.87041 -19.46591 -19.25379 -17.78687 -17.73388 -17.35681 -16.67975 -15.73393 -15.14300 -14.94982 -14.93735 -14.54180 -14.40655 -14.02662 -13.84150 -13.56474 -13.49349 -13.35301 -13.25743 -13.04851 -12.86383 -12.50879 -12.36726 -11.82285 -11.46006 -11.41923 -11.34952 -11.27061 -11.04093 -10.78312 -10.61717 -10.42192 -10.40971 -10.28400 -9.81864 -9.03472 -8.61947 -8.31123 -6.45372 -4.13054 0.71748 1.71097 1.84295 2.39136 3.06215 3.13641 3.16975 3.24146 3.25929 3.42101 3.44535 3.86107 4.15841 4.33281 4.46216 4.60128 4.76734 4.77260 4.97081 4.97693 5.00365 5.06690 5.12873 5.17821 5.24646 5.37610 5.43752 5.53989 5.55254 5.74098 5.76171 6.04469 6.24967 6.31091 6.38820 6.47082 6.75728 7.22220 7.34344 7.36232 7.91075 8.66137 9.03996 9.80348 10.72505 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.027338 B = 0.003041 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.971639 B = 9205.699009 C = 9852.396662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.193 3.807 3 N -0.433 5.433 4 C 0.002 3.998 5 C 0.302 3.698 6 N -0.397 5.397 7 C 0.238 3.762 8 N -0.427 5.427 9 C 0.055 3.945 10 C -0.108 4.108 11 C -0.074 4.074 12 C 0.402 3.598 13 O -0.554 6.554 14 O -0.212 6.212 15 C -0.382 4.382 16 H 0.096 0.904 17 C 0.042 3.958 18 N -0.864 5.864 19 Si 0.941 3.059 20 H -0.265 1.265 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.099 4.099 24 C 0.047 3.953 25 O -0.211 6.211 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.269 0.731 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.737 5.690 -3.774 21.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.018 4.018 3 N -0.162 5.162 4 C -0.121 4.121 5 C -0.014 4.014 6 N -0.074 5.074 7 C 0.080 3.920 8 N -0.148 5.148 9 C -0.069 4.069 10 C -0.145 4.145 11 C -0.094 4.094 12 C 0.248 3.752 13 O -0.451 6.451 14 O -0.119 6.119 15 C -0.458 4.458 16 H 0.113 0.887 17 C -0.162 4.162 18 N -0.501 5.501 19 Si 0.766 3.234 20 H -0.190 1.190 21 H -0.201 1.201 22 H -0.202 1.202 23 C -0.137 4.137 24 C -0.078 4.078 25 O -0.096 6.096 26 H 0.113 0.887 27 H 0.109 0.891 28 H 0.121 0.879 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -19.143 7.243 -4.224 20.898 hybrid contribution 0.335 -1.594 0.405 1.679 sum -18.807 5.649 -3.819 20.005 Atomic orbital electron populations 1.20315 0.80570 1.05384 1.04963 1.25872 0.96056 0.77231 1.02674 1.70670 0.99454 1.29365 1.16711 1.16233 0.88373 0.86780 1.20743 1.23454 0.91501 0.92717 0.93689 1.81328 1.09561 1.07218 1.09342 1.21752 0.80766 0.91855 0.97638 1.59321 1.07854 1.06298 1.41363 1.22628 0.93293 1.01984 0.88988 1.21631 0.95391 0.92112 1.05400 1.20851 0.93143 0.94910 1.00488 1.22902 0.86000 0.83571 0.82758 1.90558 1.81137 1.41104 1.32329 1.83863 1.24310 1.58481 1.45244 1.21268 0.91613 1.22561 1.10398 0.88665 1.25327 0.98651 0.97349 0.94837 1.69990 1.32269 1.36584 1.11278 0.85635 0.79887 0.79100 0.78780 1.18953 1.20142 1.20164 1.21481 0.93245 0.99516 0.99421 1.22434 0.98932 0.83498 1.02955 1.84461 1.15683 1.38055 1.71427 0.88666 0.89064 0.87878 0.89313 0.91749 0.88087 0.89950 0.88603 0.92102 0.89440 0.89584 0.92072 0.88807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.20 10.51 36.01 0.38 0.18 16 2 C 0.19 1.68 8.27 -13.15 -0.11 1.57 16 3 N -0.43 -5.01 11.35 -8.19 -0.09 -5.10 16 4 C 0.00 0.03 6.84 -83.87 -0.57 -0.55 16 5 C 0.30 4.27 13.64 -22.47 -0.31 3.96 16 6 N -0.40 -6.22 18.54 41.84 0.78 -5.44 16 7 C 0.24 2.74 6.61 -14.73 -0.10 2.64 16 8 N -0.43 -5.10 4.69 -173.18 -0.81 -5.91 16 9 C 0.05 0.67 5.26 -3.83 -0.02 0.65 16 10 C -0.11 -1.63 5.31 -26.65 -0.14 -1.77 16 11 C -0.07 -1.22 2.70 -91.65 -0.25 -1.47 16 12 C 0.40 9.35 7.20 36.00 0.26 9.61 16 13 O -0.55 -14.23 15.21 -19.05 -0.29 -14.52 16 14 O -0.21 -5.83 9.68 -20.72 -0.20 -6.03 16 15 C -0.38 -11.08 9.65 30.92 0.30 -10.78 16 16 H 0.10 2.80 6.86 -52.48 -0.36 2.44 16 17 C 0.04 1.18 5.49 -17.53 -0.10 1.08 16 18 N -0.86 -24.88 13.67 55.48 0.76 -24.12 16 19 Si 0.94 21.08 29.55 -169.99 -5.02 16.06 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 23 C -0.10 -1.35 4.68 -26.65 -0.12 -1.48 16 24 C 0.05 0.50 4.93 -3.83 -0.02 0.48 16 25 O -0.21 -2.06 9.93 5.01 0.05 -2.01 16 26 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 28 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.09 1.13 5.73 -51.93 -0.30 0.83 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 32 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.09 1.31 8.04 -51.93 -0.42 0.89 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.87 7.97 -51.92 -0.41 0.45 16 LS Contribution 335.22 15.07 5.05 5.05 Total: -1.00 -34.42 335.22 -5.01 -39.43 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -4.43 Total: -1.55 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -0.80 Total: 4.14 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.63 Total: -40.57 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.44 Total: -22.56 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.42 -5.01 -39.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796280827.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.596 kcal (2) G-P(sol) polarization free energy of solvation -34.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds