Wall clock time and date at job start Tue Mar 31 2020 08:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47042 * 2 1 4 4 C 1.50704 * 109.47102 * 240.00490 * 2 1 3 5 5 O 1.20830 * 119.99576 * 239.99994 * 4 2 1 6 6 O 1.34229 * 120.00267 * 59.99563 * 4 2 1 7 7 C 1.45197 * 116.99971 * 179.97438 * 6 4 2 8 8 C 1.53004 * 109.46952 * 180.02562 * 7 6 4 9 9 C 1.50701 * 109.46972 * 180.02562 * 8 7 6 10 10 H 1.08003 * 119.99975 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00051 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00052 * 180.02562 * 11 9 8 13 13 Si 1.86795 * 119.99987 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47326 * 89.99703 * 13 11 9 15 15 H 1.48499 * 109.47334 * 209.99967 * 13 11 9 16 16 H 1.48501 * 109.47192 * 329.99918 * 13 11 9 17 17 C 1.50697 * 109.46924 * 120.00471 * 2 1 3 18 18 C 1.38344 * 119.91293 * 359.97382 * 17 2 1 19 19 C 1.38556 * 120.27923 * 180.02562 * 18 17 2 20 20 F 1.35102 * 119.94716 * 179.97438 * 19 18 17 21 21 C 1.38193 * 120.09941 * 359.97438 * 19 18 17 22 22 C 1.39582 * 119.82044 * 0.02562 * 21 19 18 23 23 C 1.43208 * 120.13685 * 179.97438 * 22 21 19 24 24 N 5.95768 * 144.45587 * 119.99473 * 2 1 3 25 25 C 1.37935 * 119.90859 * 180.02562 * 17 2 1 26 26 H 1.08997 * 109.47272 * 299.99631 * 1 2 3 27 27 H 1.09006 * 109.46770 * 59.99896 * 1 2 3 28 28 H 1.09005 * 109.46761 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46887 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47294 * 299.99953 * 3 2 1 31 31 H 1.08997 * 109.46786 * 60.00071 * 3 2 1 32 32 H 1.08994 * 109.47774 * 300.00679 * 7 6 4 33 33 H 1.09002 * 109.46895 * 60.00920 * 7 6 4 34 34 H 1.08994 * 109.47353 * 300.00268 * 8 7 6 35 35 H 1.08994 * 109.46841 * 60.00933 * 8 7 6 36 36 H 0.96996 * 119.99844 * 180.02562 * 12 11 9 37 37 H 1.07995 * 119.85794 * 0.02814 * 18 17 2 38 38 H 1.08006 * 120.08911 * 179.97438 * 21 19 18 39 39 H 1.08004 * 120.05109 * 359.69717 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 8 2.7271 -1.6927 -1.1197 6 8 1.7081 -0.2517 -2.4497 7 6 2.2277 -0.9855 -3.5897 8 6 1.7566 -0.3183 -4.8835 9 6 2.2954 -1.0803 -6.0667 10 1 2.9126 -1.9529 -5.9115 11 6 2.0014 -0.6628 -7.3475 12 7 2.4712 -1.3281 -8.3801 13 14 0.9357 0.8477 -7.6159 14 1 1.7973 2.0552 -7.6865 15 1 0.1821 0.7023 -8.8872 16 1 -0.0195 0.9865 -6.4874 17 6 2.0323 -0.7105 1.2304 18 6 1.1317 -1.2352 2.1401 19 6 1.5851 -1.8894 3.2741 20 9 0.6997 -2.3988 4.1583 21 6 2.9417 -2.0217 3.5021 22 6 3.8541 -1.4939 2.5871 23 6 5.2613 -1.6267 2.8169 24 7 6.3776 -1.7314 2.9995 25 6 3.3889 -0.8350 1.4471 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.3172 -0.9845 -3.5567 33 1 1.8642 -2.0126 -3.5570 34 1 0.6671 -0.3190 -4.9168 35 1 2.1204 0.7086 -4.9160 36 1 2.2646 -1.0341 -9.2811 37 1 0.0707 -1.1344 1.9654 38 1 3.2950 -2.5314 4.3864 39 1 4.0901 -0.4282 0.7335 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797206959.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:28:24 Heat of formation + Delta-G solvation = -87.570492 kcal Electronic energy + Delta-G solvation = -23970.101171 eV Core-core repulsion = 20178.316850 eV Total energy + Delta-G solvation = -3791.784321 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.30111 -41.06292 -39.49119 -37.13339 -36.28207 -35.50666 -33.34907 -31.59058 -30.89774 -30.31522 -27.84784 -25.70435 -24.84370 -23.65071 -22.93351 -20.82068 -20.48386 -18.66158 -17.43309 -17.07170 -16.82393 -16.73273 -16.42551 -16.15698 -16.01627 -15.84581 -14.64075 -14.28414 -14.22752 -14.12573 -13.77533 -13.63239 -13.57572 -13.15381 -12.83624 -12.69645 -12.54530 -12.50536 -12.31579 -12.10786 -12.08888 -11.62576 -11.45996 -11.36004 -11.28189 -10.75517 -10.58887 -10.02758 -9.94810 -9.77804 -9.45941 -9.39099 -9.16053 -8.66834 -6.17089 -4.18826 0.21023 0.64190 2.29332 2.33167 2.38904 2.93041 3.23981 3.29309 3.31785 3.34833 3.39217 3.78663 4.01659 4.34179 4.38856 4.51894 4.54779 4.58757 4.69649 4.78387 5.04776 5.16317 5.29878 5.37708 5.42914 5.43844 5.49209 5.56657 5.66933 5.77446 5.88377 5.89542 5.90237 5.96509 6.25714 6.38066 6.68683 7.10716 7.11159 7.15356 7.57229 7.98326 8.34927 8.84476 9.42088 10.95498 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.020663 B = 0.003035 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.726079 B = 9223.811158 C = 9872.681203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.016 4.016 3 C -0.142 4.142 4 C 0.464 3.536 5 O -0.504 6.504 6 O -0.354 6.354 7 C 0.082 3.918 8 C -0.008 4.008 9 C -0.529 4.529 10 H 0.075 0.925 11 C 0.072 3.928 12 N -0.896 5.896 13 Si 0.882 3.118 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.263 1.263 17 C -0.039 4.039 18 C -0.115 4.115 19 C 0.100 3.900 20 F -0.132 7.132 21 C -0.106 4.106 22 C 0.002 3.998 23 C 0.256 3.744 24 N -0.405 5.405 25 C -0.047 4.047 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.028 0.972 35 H 0.024 0.976 36 H 0.266 0.734 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.538 4.853 24.569 25.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.017 4.017 3 C -0.199 4.199 4 C 0.305 3.695 5 O -0.392 6.392 6 O -0.270 6.270 7 C 0.010 3.990 8 C -0.046 4.046 9 C -0.567 4.567 10 H 0.093 0.907 11 C -0.130 4.130 12 N -0.534 5.534 13 Si 0.708 3.292 14 H -0.200 1.200 15 H -0.212 1.212 16 H -0.187 1.187 17 C -0.040 4.040 18 C -0.134 4.134 19 C 0.081 3.919 20 F -0.111 7.111 21 C -0.127 4.127 22 C -0.001 4.001 23 C -0.060 4.060 24 N -0.080 5.080 25 C -0.067 4.067 26 H 0.095 0.905 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.046 0.954 35 H 0.042 0.958 36 H 0.076 0.924 37 H 0.169 0.831 38 H 0.164 0.836 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.613 4.354 24.655 25.296 hybrid contribution -0.923 0.381 -0.347 1.057 sum -4.536 4.736 24.308 25.177 Atomic orbital electron populations 1.22013 0.90695 1.03521 1.04320 1.19371 0.98423 0.96343 0.87543 1.21935 1.01901 0.91781 1.04268 1.23114 0.77968 0.82879 0.85511 1.90684 1.35442 1.25595 1.87512 1.86463 1.69412 1.56245 1.14873 1.23433 0.98539 0.95313 0.81755 1.19617 0.97685 0.96911 0.90349 1.20835 1.33177 1.13896 0.88796 0.90676 1.24942 0.95437 0.96866 0.95760 1.69894 1.44971 1.39957 0.98594 0.86747 0.81175 0.83305 0.77945 1.20047 1.21167 1.18731 1.19062 0.92452 0.97811 0.94661 1.21371 1.01894 0.97374 0.92790 1.17230 0.86422 0.98921 0.89375 1.91547 1.67594 1.85007 1.66914 1.21084 0.90996 1.00401 1.00234 1.15540 0.84819 1.03049 0.96704 1.25436 0.92440 0.94133 0.94011 1.81278 1.11560 1.07745 1.07419 1.21081 0.95606 0.95434 0.94625 0.90493 0.89842 0.91382 0.91646 0.89881 0.90609 0.91661 0.91610 0.95361 0.95800 0.92385 0.83116 0.83611 0.84254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 7.06 37.16 0.26 -0.87 16 2 C -0.02 -0.15 0.79 -156.81 -0.12 -0.28 16 3 C -0.14 -1.12 8.22 37.16 0.31 -0.81 16 4 C 0.46 6.75 6.42 36.01 0.23 6.98 16 5 O -0.50 -8.69 14.85 -18.75 -0.28 -8.97 16 6 O -0.35 -5.95 10.02 -39.25 -0.39 -6.34 16 7 C 0.08 1.64 5.40 37.16 0.20 1.85 16 8 C -0.01 -0.19 4.42 -27.88 -0.12 -0.31 16 9 C -0.53 -14.65 9.66 -34.44 -0.33 -14.98 16 10 H 0.08 2.24 7.99 -52.48 -0.42 1.82 16 11 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 12 N -0.90 -26.92 13.96 55.43 0.77 -26.15 16 13 Si 0.88 20.79 27.47 -169.99 -4.67 16.12 16 14 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 17 C -0.04 -0.36 4.38 -104.70 -0.46 -0.82 16 18 C -0.12 -0.89 8.95 -39.43 -0.35 -1.25 16 19 C 0.10 0.80 7.29 -39.48 -0.29 0.51 16 20 F -0.13 -1.12 17.26 2.25 0.04 -1.08 16 21 C -0.11 -0.81 9.73 -39.10 -0.38 -1.19 16 22 C 0.00 0.02 5.73 -106.94 -0.61 -0.59 16 23 C 0.26 2.76 15.33 -22.47 -0.34 2.41 16 24 N -0.41 -5.28 18.54 41.84 0.78 -4.51 16 25 C -0.05 -0.45 7.63 -39.17 -0.30 -0.75 16 26 H 0.08 0.38 7.51 -51.93 -0.39 -0.01 16 27 H 0.08 0.69 8.11 -51.93 -0.42 0.27 16 28 H 0.07 0.53 7.51 -51.93 -0.39 0.14 16 29 H 0.06 0.52 7.38 -51.93 -0.38 0.13 16 30 H 0.08 0.69 8.11 -51.93 -0.42 0.27 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 1.33 8.13 -51.93 -0.42 0.90 16 33 H 0.07 1.34 8.13 -51.93 -0.42 0.92 16 34 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 35 H 0.02 0.54 7.57 -51.93 -0.39 0.14 16 36 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 37 H 0.15 0.88 5.87 -52.49 -0.31 0.58 16 38 H 0.15 0.85 8.06 -52.48 -0.42 0.42 16 39 H 0.14 1.37 7.50 -52.48 -0.39 0.98 16 LS Contribution 344.88 15.07 5.20 5.20 Total: -1.00 -31.98 344.88 -5.72 -37.71 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: -4.75 Total: -3.83 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -2.41 Total: -8.15 kcal Atomic # 7 Polarization: -32.21 SS G_CDS: 1.55 Total: -30.66 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.67 Total: -15.31 kcal Atomic # 9 Polarization: -1.12 SS G_CDS: 0.04 Total: -1.08 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.67 Total: 16.12 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.98 -5.72 -37.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797206959.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.865 kcal (2) G-P(sol) polarization free energy of solvation -31.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds