Wall clock time and date at job start Tue Mar 31 2020 08:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47042 * 2 1 4 4 C 1.50704 * 109.47102 * 240.00490 * 2 1 3 5 5 O 1.20830 * 119.99576 * 239.99994 * 4 2 1 6 6 O 1.34229 * 120.00267 * 59.99563 * 4 2 1 7 7 C 1.45197 * 116.99971 * 179.97438 * 6 4 2 8 8 C 1.53004 * 109.46952 * 180.02562 * 7 6 4 9 9 C 1.50701 * 109.46972 * 180.02562 * 8 7 6 10 10 H 1.08003 * 119.99975 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00051 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00052 * 180.02562 * 11 9 8 13 13 Si 1.86795 * 119.99987 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47326 * 89.99703 * 13 11 9 15 15 H 1.48499 * 109.47334 * 209.99967 * 13 11 9 16 16 H 1.48501 * 109.47192 * 329.99918 * 13 11 9 17 17 C 1.50697 * 109.46924 * 120.00471 * 2 1 3 18 18 C 1.38344 * 119.91293 * 359.97382 * 17 2 1 19 19 C 1.38556 * 120.27923 * 180.02562 * 18 17 2 20 20 F 1.35102 * 119.94716 * 179.97438 * 19 18 17 21 21 C 1.38193 * 120.09941 * 359.97438 * 19 18 17 22 22 C 1.39582 * 119.82044 * 0.02562 * 21 19 18 23 23 C 1.43208 * 120.13685 * 179.97438 * 22 21 19 24 24 N 5.95768 * 144.45587 * 119.99473 * 2 1 3 25 25 C 1.37935 * 119.90859 * 180.02562 * 17 2 1 26 26 H 1.08997 * 109.47272 * 299.99631 * 1 2 3 27 27 H 1.09006 * 109.46770 * 59.99896 * 1 2 3 28 28 H 1.09005 * 109.46761 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46887 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47294 * 299.99953 * 3 2 1 31 31 H 1.08997 * 109.46786 * 60.00071 * 3 2 1 32 32 H 1.08994 * 109.47774 * 300.00679 * 7 6 4 33 33 H 1.09002 * 109.46895 * 60.00920 * 7 6 4 34 34 H 1.08994 * 109.47353 * 300.00268 * 8 7 6 35 35 H 1.08994 * 109.46841 * 60.00933 * 8 7 6 36 36 H 0.96996 * 119.99844 * 180.02562 * 12 11 9 37 37 H 1.07995 * 119.85794 * 0.02814 * 18 17 2 38 38 H 1.08006 * 120.08911 * 179.97438 * 21 19 18 39 39 H 1.08004 * 120.05109 * 359.69717 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 8 2.7271 -1.6927 -1.1197 6 8 1.7081 -0.2517 -2.4497 7 6 2.2277 -0.9855 -3.5897 8 6 1.7566 -0.3183 -4.8835 9 6 2.2954 -1.0803 -6.0667 10 1 2.9126 -1.9529 -5.9115 11 6 2.0014 -0.6628 -7.3475 12 7 2.4712 -1.3281 -8.3801 13 14 0.9357 0.8477 -7.6159 14 1 1.7973 2.0552 -7.6865 15 1 0.1821 0.7023 -8.8872 16 1 -0.0195 0.9865 -6.4874 17 6 2.0323 -0.7105 1.2304 18 6 1.1317 -1.2352 2.1401 19 6 1.5851 -1.8894 3.2741 20 9 0.6997 -2.3988 4.1583 21 6 2.9417 -2.0217 3.5021 22 6 3.8541 -1.4939 2.5871 23 6 5.2613 -1.6267 2.8169 24 7 6.3776 -1.7314 2.9995 25 6 3.3889 -0.8350 1.4471 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.3172 -0.9845 -3.5567 33 1 1.8642 -2.0126 -3.5570 34 1 0.6671 -0.3190 -4.9168 35 1 2.1204 0.7086 -4.9160 36 1 2.2646 -1.0341 -9.2811 37 1 0.0707 -1.1344 1.9654 38 1 3.2950 -2.5314 4.3864 39 1 4.0901 -0.4282 0.7335 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797206959.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:28:24 Heat of formation + Delta-G solvation = -104.571297 kcal Electronic energy + Delta-G solvation = -23970.838381 eV Core-core repulsion = 20178.316850 eV Total energy + Delta-G solvation = -3792.521531 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.93337 -42.06670 -40.43894 -38.11937 -37.52252 -36.34867 -35.35652 -32.78118 -32.24421 -31.08507 -28.44295 -27.41762 -25.67940 -24.50860 -23.90344 -22.56720 -21.49296 -19.60819 -19.06171 -18.14655 -17.74718 -17.56728 -17.46388 -17.37992 -16.84095 -16.61197 -16.26862 -15.36980 -15.27702 -15.10083 -14.97469 -14.70583 -14.45192 -14.43405 -14.08718 -13.61321 -13.42446 -13.30326 -13.20055 -13.10482 -13.00945 -12.86848 -12.65955 -12.45331 -12.41486 -12.10201 -11.99794 -11.79128 -11.53379 -11.41267 -11.21294 -10.80228 -10.14652 -9.83738 -8.33463 -6.42066 -0.48022 -0.03789 1.17264 1.40033 1.41849 1.43825 1.51970 1.54608 1.85987 2.35796 2.51629 2.63340 3.01824 3.08438 3.29133 3.67973 3.78215 3.83626 3.91558 3.95359 4.07300 4.18854 4.20987 4.34839 4.63862 4.69818 4.78212 4.81470 4.83564 4.89027 4.94514 5.01692 5.08224 5.14193 5.31359 5.31666 5.37541 5.52152 5.56946 5.63464 6.16228 6.26903 6.64678 6.71744 7.23327 8.82822 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.020663 B = 0.003035 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.726079 B = 9223.811158 C = 9872.681203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.006 4.006 3 C -0.142 4.142 4 C 0.459 3.541 5 O -0.535 6.535 6 O -0.351 6.351 7 C 0.094 3.906 8 C -0.002 4.002 9 C -0.544 4.544 10 H 0.032 0.968 11 C 0.010 3.990 12 N -0.947 5.947 13 Si 0.956 3.044 14 H -0.263 1.263 15 H -0.283 1.283 16 H -0.239 1.239 17 C -0.050 4.050 18 C -0.100 4.100 19 C 0.097 3.903 20 F -0.132 7.132 21 C -0.093 4.093 22 C -0.007 4.007 23 C 0.278 3.722 24 N -0.451 5.451 25 C -0.054 4.054 26 H 0.113 0.887 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.038 0.962 35 H 0.036 0.964 36 H 0.270 0.730 37 H 0.175 0.825 38 H 0.165 0.835 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.121 6.859 26.630 28.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.007 4.007 3 C -0.199 4.199 4 C 0.302 3.698 5 O -0.425 6.425 6 O -0.267 6.267 7 C 0.020 3.980 8 C -0.039 4.039 9 C -0.581 4.581 10 H 0.050 0.950 11 C -0.188 4.188 12 N -0.587 5.587 13 Si 0.778 3.222 14 H -0.188 1.188 15 H -0.209 1.209 16 H -0.162 1.162 17 C -0.050 4.050 18 C -0.119 4.119 19 C 0.078 3.922 20 F -0.111 7.111 21 C -0.114 4.114 22 C -0.010 4.010 23 C -0.037 4.037 24 N -0.126 5.126 25 C -0.074 4.074 26 H 0.131 0.869 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.125 0.875 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.193 0.807 38 H 0.183 0.817 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.197 6.362 26.752 28.187 hybrid contribution -0.088 -0.350 -0.919 0.987 sum -6.285 6.012 25.833 27.258 Atomic orbital electron populations 1.22119 0.88591 1.04033 1.05955 1.19490 0.99899 0.96618 0.84689 1.22008 1.01686 0.90595 1.05638 1.24290 0.77045 0.82653 0.85768 1.90674 1.36854 1.27227 1.87701 1.86450 1.69406 1.55754 1.15082 1.22916 0.97766 0.94771 0.82500 1.19444 0.97884 0.96792 0.89812 1.21146 1.32731 1.13169 0.91101 0.94976 1.25998 0.96974 1.00637 0.95202 1.70054 1.46920 1.42343 0.99338 0.85581 0.79490 0.78579 0.78580 1.18825 1.20872 1.16167 1.19018 0.92287 0.98819 0.94918 1.21577 1.02855 0.95646 0.91846 1.17238 0.86373 0.99068 0.89511 1.91556 1.67542 1.85030 1.66932 1.21256 0.90809 0.99131 1.00177 1.15484 0.83989 1.04255 0.97303 1.25667 0.92604 0.92781 0.92691 1.81292 1.12832 1.09513 1.09012 1.21097 0.96051 0.95651 0.94633 0.86884 0.90266 0.91449 0.92216 0.90221 0.87497 0.92783 0.92670 0.94371 0.94595 0.92103 0.80732 0.81724 0.85248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 7.06 71.98 0.51 -1.24 16 2 C -0.01 -0.10 0.79 -53.67 -0.04 -0.14 16 3 C -0.14 -1.86 8.22 71.98 0.59 -1.27 16 4 C 0.46 12.96 6.42 71.24 0.46 13.42 16 5 O -0.54 -18.53 14.85 21.95 0.33 -18.20 16 6 O -0.35 -11.46 10.02 -51.41 -0.52 -11.98 16 7 C 0.09 3.81 5.40 71.98 0.39 4.20 16 8 C 0.00 -0.09 4.42 29.85 0.13 0.05 16 9 C -0.54 -30.87 9.66 25.60 0.25 -30.62 16 10 H 0.03 2.02 7.99 -2.91 -0.02 2.00 16 11 C 0.01 0.55 5.47 84.65 0.46 1.01 16 12 N -0.95 -58.42 13.96 21.45 0.30 -58.12 16 13 Si 0.96 42.13 27.47 68.60 1.88 44.01 16 14 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 15 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 16 H -0.24 -9.52 6.54 99.48 0.65 -8.87 16 17 C -0.05 -0.80 4.38 -19.91 -0.09 -0.88 16 18 C -0.10 -1.22 8.95 22.37 0.20 -1.02 16 19 C 0.10 1.26 7.29 22.33 0.16 1.42 16 20 F -0.13 -1.82 17.26 44.97 0.78 -1.04 16 21 C -0.09 -1.21 9.73 22.58 0.22 -0.99 16 22 C -0.01 -0.11 5.73 -21.37 -0.12 -0.24 16 23 C 0.28 5.92 15.33 88.33 1.35 7.28 16 24 N -0.45 -11.92 18.54 19.01 0.35 -11.57 16 25 C -0.05 -0.97 7.63 22.54 0.17 -0.80 16 26 H 0.11 0.53 7.51 -2.39 -0.02 0.51 16 27 H 0.08 1.04 8.11 -2.38 -0.02 1.02 16 28 H 0.07 0.81 7.51 -2.38 -0.02 0.79 16 29 H 0.06 0.85 7.38 -2.39 -0.02 0.83 16 30 H 0.08 1.12 8.11 -2.39 -0.02 1.10 16 31 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 2.28 8.13 -2.39 -0.02 2.26 16 33 H 0.05 2.32 8.13 -2.39 -0.02 2.30 16 34 H 0.04 1.66 7.20 -2.39 -0.02 1.64 16 35 H 0.04 1.55 7.57 -2.39 -0.02 1.53 16 36 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 37 H 0.18 1.25 5.87 -2.91 -0.02 1.23 16 38 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 39 H 0.13 2.56 7.50 -2.91 -0.02 2.54 16 Total: -1.00 -71.73 344.88 8.79 -62.93 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: 1.02 Total: 3.80 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: 4.65 Total: -9.84 kcal Atomic # 7 Polarization: -70.34 SS G_CDS: 0.65 Total: -69.69 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -0.19 Total: -30.18 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.78 Total: -1.04 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 1.88 Total: 44.01 kcal Total: -71.73 8.79 -62.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797206959.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.637 kcal (2) G-P(sol) polarization free energy of solvation -71.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds