Wall clock time and date at job start Tue Mar 31 2020 08:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39548 * 120.14205 * 241.70679 * 3 2 1 5 5 C 1.37956 * 119.85738 * 180.02562 * 4 3 2 6 6 C 1.38363 * 120.13921 * 0.02583 * 5 4 3 7 7 C 1.38326 * 120.28766 * 359.97334 * 6 5 4 8 8 C 1.37992 * 120.14196 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.07031 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47320 * 264.99706 * 9 8 7 11 11 O 1.21282 * 119.99960 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00032 * 179.97438 * 10 9 8 13 13 C 1.39239 * 119.99955 * 175.71235 * 12 10 9 14 14 C 1.39485 * 119.83189 * 215.02170 * 13 12 10 15 15 C 1.36381 * 120.16153 * 179.71873 * 14 13 12 16 16 C 1.40866 * 119.83190 * 0.57215 * 15 14 13 17 17 C 1.41148 * 120.16073 * 179.67580 * 16 15 14 18 18 H 1.08004 * 120.00030 * 214.79771 * 17 16 15 19 19 C 1.39902 * 120.00130 * 34.80722 * 17 16 15 20 20 N 1.30870 * 120.00040 * 355.55670 * 19 17 16 21 21 Si 1.86805 * 119.99809 * 175.55700 * 19 17 16 22 22 H 1.48488 * 109.47246 * 60.00075 * 21 19 17 23 23 H 1.48507 * 109.46995 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47095 * 299.99383 * 21 19 17 25 25 C 1.40865 * 119.67279 * 359.69904 * 16 15 14 26 26 C 1.36377 * 119.82811 * 0.02562 * 25 16 15 27 27 H 4.52084 * 14.02021 * 359.97438 * 4 2 1 28 28 H 1.08007 * 120.07294 * 0.27731 * 4 3 2 29 29 H 1.07992 * 119.92890 * 180.02562 * 5 4 3 30 30 H 1.08002 * 119.85652 * 179.97438 * 6 5 4 31 31 H 1.08003 * 119.93002 * 180.02562 * 7 6 5 32 32 H 1.08999 * 109.47124 * 25.00246 * 9 8 7 33 33 H 1.09004 * 109.46875 * 145.00422 * 9 8 7 34 34 H 0.96994 * 120.00258 * 355.72093 * 12 10 9 35 35 H 1.07986 * 119.91501 * 0.02562 * 14 13 12 36 36 H 1.08000 * 120.07621 * 180.25307 * 15 14 13 37 37 H 0.97000 * 120.00114 * 180.02562 * 20 19 17 38 38 H 1.07999 * 120.08746 * 179.97438 * 25 16 15 39 39 H 1.07998 * 119.91447 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3065 0.5730 1.0626 5 6 4.6861 0.5708 1.0563 6 6 5.3751 0.0033 -0.0008 7 6 4.6867 -0.5657 -1.0572 8 6 3.3068 -0.5700 -1.0629 9 6 2.5584 -1.1908 -2.2143 10 6 2.2003 -0.1225 -3.2151 11 8 2.5216 1.0294 -3.0135 12 7 1.5239 -0.4475 -4.3346 13 6 1.1150 0.5505 -5.2153 14 6 -0.0947 0.4209 -5.8976 15 6 -0.5044 1.3970 -6.7574 16 6 0.3031 2.5324 -6.9647 17 6 -0.1110 3.5436 -7.8582 18 1 0.6206 4.0761 -8.4478 19 6 -1.4692 3.8562 -7.9800 20 7 -2.3631 3.1538 -7.3317 21 14 -2.0068 5.2763 -9.0681 22 1 -1.5705 5.0227 -10.4646 23 1 -3.4862 5.3998 -9.0259 24 1 -1.3914 6.5359 -8.5781 25 6 1.5261 2.6535 -6.2763 26 6 1.9199 1.6719 -5.4154 27 1 -1.0500 0.0002 -0.0007 28 1 2.7698 1.0130 1.8902 29 1 5.2293 1.0130 1.8783 30 1 6.4551 0.0045 -0.0013 31 1 5.2304 -1.0074 -1.8792 32 1 3.1868 -1.9416 -2.6934 33 1 1.6477 -1.6617 -1.8440 34 1 1.3219 -1.3765 -4.5268 35 1 -0.7105 -0.4522 -5.7408 36 1 -1.4432 1.2971 -7.2819 37 1 -3.3048 3.3703 -7.4164 38 1 2.1506 3.5210 -6.4305 39 1 2.8571 1.7635 -4.8866 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810029559.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:26:25 Heat of formation + Delta-G solvation = 63.076755 kcal Electronic energy + Delta-G solvation = -22886.570784 eV Core-core repulsion = 19532.088243 eV Total energy + Delta-G solvation = -3354.482541 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.116 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.10464 -38.97420 -37.17186 -34.41205 -33.92223 -32.98644 -32.56215 -30.25715 -29.58864 -29.10334 -27.59451 -24.80110 -23.34862 -22.25723 -21.36817 -20.67039 -19.60680 -18.76116 -17.34317 -16.88271 -16.43677 -16.07824 -15.78107 -15.25950 -15.08337 -14.44087 -13.94021 -13.81466 -13.74033 -13.29892 -13.06309 -12.82248 -12.58316 -12.19262 -12.01978 -11.70961 -11.53322 -11.33878 -11.31593 -11.15926 -11.10133 -10.95943 -10.70664 -10.40564 -10.01800 -9.47719 -9.40971 -9.16162 -8.90180 -8.78924 -8.47821 -7.52683 -6.83841 -6.59996 -4.32519 0.91153 1.28632 2.59082 2.77763 3.02704 3.05967 3.09561 3.11251 3.13145 3.36698 3.70691 3.99160 4.06380 4.30610 4.59859 4.71258 4.76815 4.93022 5.13861 5.22511 5.35159 5.37700 5.54223 5.62693 5.67787 5.92856 6.04916 6.20892 6.33480 6.38377 6.47270 6.47776 6.78207 6.85652 6.94978 7.08869 7.23159 7.32015 7.56847 7.65755 7.77163 7.90090 8.08115 8.29018 8.33886 8.64404 8.79314 8.94557 9.02548 10.31119 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.023465 B = 0.002948 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.992605 B = 9494.192681 C = 9614.278146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.147 4.147 3 C 0.026 3.974 4 C -0.097 4.097 5 C -0.122 4.122 6 C -0.111 4.111 7 C -0.107 4.107 8 C -0.037 4.037 9 C -0.106 4.106 10 C 0.502 3.498 11 O -0.520 6.520 12 N -0.654 5.654 13 C 0.006 3.994 14 C -0.122 4.122 15 C -0.141 4.141 16 C 0.100 3.900 17 C -0.462 4.462 18 H 0.075 0.925 19 C 0.070 3.930 20 N -0.813 5.813 21 Si 0.915 3.085 22 H -0.266 1.266 23 H -0.279 1.279 24 H -0.266 1.266 25 C -0.205 4.205 26 C -0.086 4.086 27 H 0.223 0.777 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.395 0.605 35 H 0.090 0.910 36 H 0.132 0.868 37 H 0.278 0.722 38 H 0.095 0.905 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.759 -10.192 12.475 17.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.147 4.147 3 C 0.026 3.974 4 C -0.115 4.115 5 C -0.140 4.140 6 C -0.129 4.129 7 C -0.125 4.125 8 C -0.037 4.037 9 C -0.146 4.146 10 C 0.288 3.712 11 O -0.395 6.395 12 N -0.297 5.297 13 C -0.086 4.086 14 C -0.142 4.142 15 C -0.161 4.161 16 C 0.097 3.903 17 C -0.493 4.493 18 H 0.093 0.907 19 C -0.145 4.145 20 N -0.440 5.440 21 Si 0.740 3.260 22 H -0.191 1.191 23 H -0.204 1.204 24 H -0.191 1.191 25 C -0.225 4.225 26 C -0.106 4.106 27 H 0.240 0.760 28 H 0.143 0.857 29 H 0.143 0.857 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.228 0.772 35 H 0.109 0.891 36 H 0.149 0.851 37 H 0.089 0.911 38 H 0.113 0.887 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.734 -9.374 12.675 17.560 hybrid contribution -0.742 0.271 -0.473 0.921 sum 6.992 -9.103 12.202 16.753 Atomic orbital electron populations 1.24899 0.95797 0.98961 0.99375 1.19940 0.92011 1.01536 1.01259 1.15780 0.86576 0.99873 0.95209 1.21137 0.94237 0.98585 0.97540 1.21026 0.93819 1.00204 0.98988 1.21185 0.99954 0.97824 0.93930 1.20919 0.92941 1.00119 0.98549 1.19345 0.93398 0.97514 0.93471 1.20707 1.01872 0.97904 0.94078 1.20307 0.79358 0.89758 0.81753 1.90709 1.52322 1.20463 1.76049 1.42991 1.56182 1.09363 1.21183 1.17271 0.96923 0.93604 1.00797 1.20315 0.93825 0.99611 1.00448 1.21186 1.01697 0.92484 1.00758 1.17706 0.90607 0.91337 0.90614 1.19462 0.92262 1.16760 1.20819 0.90683 1.25869 0.96518 0.97372 0.94743 1.69753 1.02522 1.36256 1.35492 0.86254 0.77690 0.81449 0.80565 1.19063 1.20448 1.19109 1.20808 1.00577 0.99416 1.01730 1.20398 0.98286 0.94070 0.97842 0.76000 0.85733 0.85685 0.85763 0.85615 0.88060 0.88156 0.77185 0.89136 0.85054 0.91131 0.88660 0.87521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 19.25 29.55 0.57 -1.72 16 2 C -0.15 -2.19 11.80 -38.84 -0.46 -2.64 16 3 C 0.03 0.37 5.72 -107.00 -0.61 -0.24 16 4 C -0.10 -1.19 9.75 -39.20 -0.38 -1.58 16 5 C -0.12 -1.29 10.03 -39.64 -0.40 -1.69 16 6 C -0.11 -1.17 10.04 -39.50 -0.40 -1.56 16 7 C -0.11 -1.27 9.67 -39.64 -0.38 -1.66 16 8 C -0.04 -0.50 4.41 -104.23 -0.46 -0.96 16 9 C -0.11 -1.35 5.35 -29.04 -0.16 -1.50 16 10 C 0.50 8.90 7.65 -10.99 -0.08 8.82 16 11 O -0.52 -11.55 13.45 5.56 0.07 -11.48 16 12 N -0.65 -11.57 5.30 -9.74 -0.05 -11.62 16 13 C 0.01 0.14 6.31 -83.57 -0.53 -0.39 16 14 C -0.12 -2.81 9.90 -39.79 -0.39 -3.20 16 15 C -0.14 -3.67 8.61 -39.26 -0.34 -4.01 16 16 C 0.10 2.72 5.55 -106.81 -0.59 2.12 16 17 C -0.46 -12.50 9.02 -37.86 -0.34 -12.84 16 18 H 0.08 1.95 7.85 -52.48 -0.41 1.53 16 19 C 0.07 1.79 5.42 -17.34 -0.09 1.69 16 20 N -0.81 -21.37 10.60 55.55 0.59 -20.78 16 21 Si 0.92 19.23 29.56 -169.99 -5.03 14.20 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 C -0.21 -5.31 9.74 -39.26 -0.38 -5.69 16 26 C -0.09 -2.11 8.61 -39.79 -0.34 -2.45 16 27 H 0.22 2.13 7.80 -54.09 -0.42 1.70 16 28 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 29 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 30 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 31 H 0.13 1.24 8.06 -52.48 -0.42 0.81 16 32 H 0.10 0.96 8.05 -51.93 -0.42 0.54 16 33 H 0.10 1.16 7.28 -51.93 -0.38 0.78 16 34 H 0.39 5.37 8.82 -40.82 -0.36 5.01 16 35 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 36 H 0.13 3.51 6.13 -52.49 -0.32 3.19 16 37 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 38 H 0.10 2.35 8.06 -52.49 -0.42 1.93 16 39 H 0.11 2.59 6.22 -52.49 -0.33 2.27 16 LS Contribution 345.86 15.07 5.21 5.21 Total: -1.00 -32.74 345.86 -9.28 -42.03 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -4.31 Total: 11.94 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -5.77 Total: -29.50 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: 0.54 Total: -32.40 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.07 Total: -11.48 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.74 -9.28 -42.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810029559.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.104 kcal (2) G-P(sol) polarization free energy of solvation -32.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds