Wall clock time and date at job start Tue Mar 31 2020 08:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39548 * 120.14205 * 241.70679 * 3 2 1 5 5 C 1.37956 * 119.85738 * 180.02562 * 4 3 2 6 6 C 1.38363 * 120.13921 * 0.02583 * 5 4 3 7 7 C 1.38326 * 120.28766 * 359.97334 * 6 5 4 8 8 C 1.37992 * 120.14196 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.07031 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47320 * 264.99706 * 9 8 7 11 11 O 1.21282 * 119.99960 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00032 * 179.97438 * 10 9 8 13 13 C 1.39239 * 119.99955 * 175.71235 * 12 10 9 14 14 C 1.39485 * 119.83189 * 215.02170 * 13 12 10 15 15 C 1.36381 * 120.16153 * 179.71873 * 14 13 12 16 16 C 1.40866 * 119.83190 * 0.57215 * 15 14 13 17 17 C 1.41148 * 120.16073 * 179.67580 * 16 15 14 18 18 H 1.08004 * 120.00030 * 214.79771 * 17 16 15 19 19 C 1.39902 * 120.00130 * 34.80722 * 17 16 15 20 20 N 1.30870 * 120.00040 * 355.55670 * 19 17 16 21 21 Si 1.86805 * 119.99809 * 175.55700 * 19 17 16 22 22 H 1.48488 * 109.47246 * 60.00075 * 21 19 17 23 23 H 1.48507 * 109.46995 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47095 * 299.99383 * 21 19 17 25 25 C 1.40865 * 119.67279 * 359.69904 * 16 15 14 26 26 C 1.36377 * 119.82811 * 0.02562 * 25 16 15 27 27 H 4.52084 * 14.02021 * 359.97438 * 4 2 1 28 28 H 1.08007 * 120.07294 * 0.27731 * 4 3 2 29 29 H 1.07992 * 119.92890 * 180.02562 * 5 4 3 30 30 H 1.08002 * 119.85652 * 179.97438 * 6 5 4 31 31 H 1.08003 * 119.93002 * 180.02562 * 7 6 5 32 32 H 1.08999 * 109.47124 * 25.00246 * 9 8 7 33 33 H 1.09004 * 109.46875 * 145.00422 * 9 8 7 34 34 H 0.96994 * 120.00258 * 355.72093 * 12 10 9 35 35 H 1.07986 * 119.91501 * 0.02562 * 14 13 12 36 36 H 1.08000 * 120.07621 * 180.25307 * 15 14 13 37 37 H 0.97000 * 120.00114 * 180.02562 * 20 19 17 38 38 H 1.07999 * 120.08746 * 179.97438 * 25 16 15 39 39 H 1.07998 * 119.91447 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3065 0.5730 1.0626 5 6 4.6861 0.5708 1.0563 6 6 5.3751 0.0033 -0.0008 7 6 4.6867 -0.5657 -1.0572 8 6 3.3068 -0.5700 -1.0629 9 6 2.5584 -1.1908 -2.2143 10 6 2.2003 -0.1225 -3.2151 11 8 2.5216 1.0294 -3.0135 12 7 1.5239 -0.4475 -4.3346 13 6 1.1150 0.5505 -5.2153 14 6 -0.0947 0.4209 -5.8976 15 6 -0.5044 1.3970 -6.7574 16 6 0.3031 2.5324 -6.9647 17 6 -0.1110 3.5436 -7.8582 18 1 0.6206 4.0761 -8.4478 19 6 -1.4692 3.8562 -7.9800 20 7 -2.3631 3.1538 -7.3317 21 14 -2.0068 5.2763 -9.0681 22 1 -1.5705 5.0227 -10.4646 23 1 -3.4862 5.3998 -9.0259 24 1 -1.3914 6.5359 -8.5781 25 6 1.5261 2.6535 -6.2763 26 6 1.9199 1.6719 -5.4154 27 1 -1.0500 0.0002 -0.0007 28 1 2.7698 1.0130 1.8902 29 1 5.2293 1.0130 1.8783 30 1 6.4551 0.0045 -0.0013 31 1 5.2304 -1.0074 -1.8792 32 1 3.1868 -1.9416 -2.6934 33 1 1.6477 -1.6617 -1.8440 34 1 1.3219 -1.3765 -4.5268 35 1 -0.7105 -0.4522 -5.7408 36 1 -1.4432 1.2971 -7.2819 37 1 -3.3048 3.3703 -7.4164 38 1 2.1506 3.5210 -6.4305 39 1 2.8571 1.7635 -4.8866 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810029559.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:26:24 Heat of formation + Delta-G solvation = 45.661310 kcal Electronic energy + Delta-G solvation = -22887.325974 eV Core-core repulsion = 19532.088243 eV Total energy + Delta-G solvation = -3355.237731 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.116 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.42157 -40.16848 -38.92596 -36.15101 -34.90161 -34.70409 -33.65300 -31.50102 -31.18528 -30.85854 -28.82231 -26.58536 -24.25901 -23.66512 -22.98704 -22.28074 -21.12555 -19.70956 -19.27804 -18.37512 -17.86674 -17.16232 -16.97401 -16.82416 -16.11001 -15.89737 -15.61285 -15.23737 -14.85455 -14.59854 -14.51551 -14.15696 -14.01250 -13.76590 -13.60399 -13.23636 -13.16898 -12.82679 -12.73051 -12.49129 -12.40033 -12.17763 -12.09869 -11.79991 -11.40439 -11.39284 -11.21144 -10.82005 -10.59315 -9.77413 -9.47735 -9.40700 -8.73061 -8.50908 -6.33840 -0.00771 0.39792 0.80023 1.12746 1.38689 1.46329 1.50695 1.74590 1.80848 2.07405 2.23359 2.37956 2.80216 3.04591 3.38556 3.62446 3.67750 3.90678 4.04961 4.16186 4.31831 4.39183 4.46902 4.53015 4.55608 4.67384 4.75156 4.92366 5.07287 5.13482 5.14760 5.17891 5.34366 5.43530 5.48033 5.53746 5.56884 5.68767 5.90433 6.01944 6.02919 6.13493 6.38622 6.55641 6.66575 6.73945 6.95981 6.99513 7.41666 8.41711 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.023465 B = 0.002948 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.992605 B = 9494.192681 C = 9614.278146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.183 4.183 3 C -0.006 4.006 4 C -0.113 4.113 5 C -0.121 4.121 6 C -0.112 4.112 7 C -0.116 4.116 8 C -0.061 4.061 9 C -0.092 4.092 10 C 0.502 3.498 11 O -0.567 6.567 12 N -0.646 5.646 13 C 0.024 3.976 14 C -0.120 4.120 15 C -0.159 4.159 16 C 0.068 3.932 17 C -0.500 4.500 18 H 0.072 0.928 19 C 0.028 3.972 20 N -0.841 5.841 21 Si 0.988 3.012 22 H -0.257 1.257 23 H -0.267 1.267 24 H -0.266 1.266 25 C -0.222 4.222 26 C -0.098 4.098 27 H 0.251 0.749 28 H 0.133 0.867 29 H 0.154 0.846 30 H 0.155 0.845 31 H 0.145 0.855 32 H 0.141 0.859 33 H 0.114 0.886 34 H 0.418 0.582 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.285 0.715 38 H 0.093 0.907 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.291 -11.403 13.257 19.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.183 4.183 3 C -0.006 4.006 4 C -0.131 4.131 5 C -0.139 4.139 6 C -0.130 4.130 7 C -0.134 4.134 8 C -0.062 4.062 9 C -0.132 4.132 10 C 0.291 3.709 11 O -0.445 6.445 12 N -0.292 5.292 13 C -0.070 4.070 14 C -0.140 4.140 15 C -0.179 4.179 16 C 0.066 3.934 17 C -0.531 4.531 18 H 0.090 0.910 19 C -0.184 4.184 20 N -0.469 5.469 21 Si 0.809 3.191 22 H -0.182 1.182 23 H -0.192 1.192 24 H -0.191 1.191 25 C -0.242 4.242 26 C -0.118 4.118 27 H 0.267 0.733 28 H 0.151 0.849 29 H 0.172 0.828 30 H 0.172 0.828 31 H 0.163 0.837 32 H 0.159 0.841 33 H 0.132 0.868 34 H 0.256 0.744 35 H 0.143 0.857 36 H 0.137 0.863 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.275 -10.648 13.471 19.061 hybrid contribution -0.804 0.558 -0.556 1.125 sum 7.471 -10.090 12.915 18.012 Atomic orbital electron populations 1.25684 0.96649 0.98137 0.98425 1.20510 0.92920 1.02526 1.02297 1.16145 0.86790 1.01181 0.96482 1.21408 0.95315 0.98790 0.97565 1.21422 0.93271 0.99367 0.99830 1.21613 1.01567 0.96598 0.93217 1.21272 0.92515 1.00066 0.99562 1.19559 0.94346 0.98567 0.93684 1.20699 1.03242 0.96669 0.92571 1.21203 0.77633 0.90248 0.81806 1.90693 1.53934 1.22935 1.76973 1.42934 1.55996 1.09625 1.20607 1.17328 0.95956 0.93678 1.00045 1.20572 0.94161 0.99955 0.99269 1.21180 1.01450 0.93221 1.02012 1.18011 0.91478 0.92267 0.91690 1.19702 0.93411 1.17873 1.22118 0.90989 1.26731 0.95940 0.99841 0.95862 1.69816 1.03026 1.37641 1.36447 0.85162 0.77665 0.77563 0.78711 1.18158 1.19152 1.19095 1.20926 1.00652 1.00137 1.02504 1.20506 0.98773 0.94817 0.97711 0.73305 0.84939 0.82811 0.82771 0.83698 0.84131 0.86808 0.74433 0.85688 0.86275 0.90459 0.88839 0.87594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.41 19.25 74.32 1.43 -2.98 16 2 C -0.18 -5.35 11.80 30.02 0.35 -5.00 16 3 C -0.01 -0.17 5.72 -21.41 -0.12 -0.29 16 4 C -0.11 -2.70 9.75 22.52 0.22 -2.48 16 5 C -0.12 -2.31 10.03 22.23 0.22 -2.09 16 6 C -0.11 -2.07 10.04 22.32 0.22 -1.85 16 7 C -0.12 -2.50 9.67 22.23 0.21 -2.29 16 8 C -0.06 -1.59 4.41 -19.61 -0.09 -1.67 16 9 C -0.09 -2.14 5.35 29.10 0.16 -1.99 16 10 C 0.50 17.04 7.65 87.66 0.67 17.71 16 11 O -0.57 -25.08 13.45 -3.04 -0.04 -25.12 16 12 N -0.65 -21.55 5.30 -303.11 -1.61 -23.16 16 13 C 0.02 1.04 6.31 38.57 0.24 1.28 16 14 C -0.12 -5.42 9.90 22.14 0.22 -5.20 16 15 C -0.16 -8.40 8.61 22.48 0.19 -8.20 16 16 C 0.07 3.82 5.55 -21.28 -0.12 3.70 16 17 C -0.50 -28.03 9.02 23.39 0.21 -27.82 16 18 H 0.07 3.90 7.85 -2.91 -0.02 3.87 16 19 C 0.03 1.46 5.42 85.24 0.46 1.93 16 20 N -0.84 -44.98 10.60 21.82 0.23 -44.75 16 21 Si 0.99 39.70 29.56 68.60 2.03 41.73 16 22 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 23 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 24 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 25 C -0.22 -11.92 9.74 22.48 0.22 -11.70 16 26 C -0.10 -4.87 8.61 22.14 0.19 -4.68 16 27 H 0.25 4.38 7.80 -4.42 -0.03 4.34 16 28 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 29 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 30 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 31 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 32 H 0.14 2.11 8.05 -2.39 -0.02 2.09 16 33 H 0.11 2.35 7.28 -2.38 -0.02 2.33 16 34 H 0.42 10.05 8.82 -92.71 -0.82 9.24 16 35 H 0.13 4.72 8.06 -2.92 -0.02 4.69 16 36 H 0.12 6.55 6.13 -2.91 -0.02 6.53 16 37 H 0.28 13.84 8.30 -92.71 -0.77 13.07 16 38 H 0.09 4.85 8.06 -2.91 -0.02 4.83 16 39 H 0.11 5.24 6.22 -2.91 -0.02 5.22 16 Total: -1.00 -74.10 345.86 5.78 -68.32 By element: Atomic # 1 Polarization: 36.32 SS G_CDS: 0.26 Total: 36.58 kcal Atomic # 6 Polarization: -58.51 SS G_CDS: 4.90 Total: -53.61 kcal Atomic # 7 Polarization: -66.53 SS G_CDS: -1.38 Total: -67.91 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.04 Total: -25.12 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Total: -74.10 5.78 -68.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810029559.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.985 kcal (2) G-P(sol) polarization free energy of solvation -74.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds