Wall clock time and date at job start Tue Mar 31 2020 08:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46925 * 2 1 4 4 C 1.52998 * 109.47422 * 239.99486 * 2 1 3 5 5 C 1.53008 * 109.46661 * 119.99196 * 2 1 3 6 6 N 1.46492 * 109.47112 * 60.00547 * 5 2 1 7 7 C 1.46506 * 120.00190 * 269.99835 * 6 5 2 8 8 C 1.50699 * 109.46963 * 270.00171 * 7 6 5 9 9 H 1.08000 * 119.99823 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00077 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99741 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99788 * 359.97438 * 10 8 7 13 13 H 1.48494 * 109.47075 * 90.00039 * 12 10 8 14 14 H 1.48498 * 109.46723 * 209.99966 * 12 10 8 15 15 H 1.48500 * 109.47233 * 329.99819 * 12 10 8 16 16 C 1.34781 * 120.00440 * 89.99344 * 6 5 2 17 17 O 1.21785 * 120.00410 * 179.72181 * 16 6 5 18 18 C 1.43205 * 119.99554 * 0.02562 * 16 6 5 19 19 C 3.95167 * 139.99877 * 190.48739 * 2 1 3 20 20 C 4.92258 * 150.35922 * 206.39787 * 2 1 3 21 21 C 1.37041 * 125.47460 * 267.08424 * 20 19 18 22 22 C 1.37431 * 113.22240 * 179.97438 * 21 20 19 23 23 C 1.33870 * 115.12660 * 359.97438 * 22 21 20 24 24 S 1.70603 * 111.01571 * 359.74629 * 23 22 21 25 25 H 1.09000 * 109.47604 * 300.00619 * 1 2 3 26 26 H 1.09000 * 109.46970 * 60.00519 * 1 2 3 27 27 H 1.08998 * 109.46702 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46557 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.46446 * 299.99255 * 3 2 1 30 30 H 1.08993 * 109.47137 * 59.99449 * 3 2 1 31 31 H 1.08995 * 109.46842 * 300.00259 * 4 2 1 32 32 H 1.09000 * 109.47052 * 60.00045 * 4 2 1 33 33 H 1.08998 * 109.46902 * 180.02562 * 4 2 1 34 34 H 1.08994 * 109.47264 * 299.99922 * 5 2 1 35 35 H 1.09001 * 109.46439 * 180.02562 * 5 2 1 36 36 H 1.09003 * 109.46876 * 29.99864 * 7 6 5 37 37 H 1.09002 * 109.47433 * 149.99696 * 7 6 5 38 38 H 0.97007 * 119.99612 * 179.97438 * 11 10 8 39 39 H 1.07999 * 123.39413 * 359.97438 * 21 20 19 40 40 H 1.08000 * 122.43842 * 180.02562 * 22 21 20 41 41 H 1.07998 * 124.49126 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0400 -0.7211 1.2494 6 7 1.5517 -2.1023 1.2495 7 6 0.2715 -2.4267 1.8838 8 6 0.5023 -2.7745 3.3319 9 1 1.5025 -2.7562 3.7388 10 6 -0.5635 -3.1161 4.1371 11 7 -0.3619 -3.4202 5.4007 12 14 -2.2935 -3.1471 3.4333 13 1 -2.5854 -4.5005 2.8966 14 1 -3.2691 -2.8179 4.5035 15 1 -2.4014 -2.1473 2.3406 16 6 2.2801 -3.0747 0.6660 17 8 1.8766 -4.2237 0.6705 18 6 3.5316 -2.7577 0.0464 19 6 4.5572 -2.4977 -0.4624 20 6 5.8085 -2.1807 -1.0824 21 6 6.9573 -1.8310 -0.4220 22 6 8.0123 -1.5796 -1.2660 23 6 7.7425 -1.7174 -2.5700 24 16 6.1202 -2.1860 -2.8129 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9562 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6768 -1.7489 -1.2490 32 1 1.6768 -0.2076 -2.1392 33 1 3.1301 -0.7217 -1.2488 34 1 1.6766 -0.2072 2.1393 35 1 3.1300 -0.7207 1.2496 36 1 -0.3946 -1.5664 1.8185 37 1 -0.1817 -3.2767 1.3737 38 1 -1.1118 -3.6602 5.9673 39 1 7.0266 -1.7602 0.6534 40 1 8.9884 -1.2925 -0.9037 41 1 8.4583 -1.5579 -3.3628 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825727555.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:57 Heat of formation + Delta-G solvation = 46.778933 kcal Electronic energy + Delta-G solvation = -22610.897374 eV Core-core repulsion = 19391.152057 eV Total energy + Delta-G solvation = -3219.745316 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.68561 -38.07217 -37.11128 -34.13887 -33.73361 -32.35875 -29.73280 -28.37882 -27.15615 -26.97928 -25.87433 -25.00871 -23.33058 -21.02596 -19.76339 -19.11231 -18.36038 -17.03523 -16.91025 -16.05051 -15.76168 -15.20915 -14.47304 -14.24943 -13.96587 -13.84112 -13.69324 -13.53632 -13.08647 -13.00953 -12.79725 -12.47780 -12.37353 -12.04982 -11.79174 -11.51699 -11.42442 -11.26707 -11.24233 -10.98980 -10.88450 -10.60492 -10.55768 -10.31358 -10.24571 -10.07004 -9.66839 -9.45380 -8.82358 -8.60575 -8.54744 -7.80655 -6.10016 -4.09291 0.35298 1.01172 1.70644 2.13211 2.26951 3.06481 3.28288 3.33842 3.36150 3.54024 4.00139 4.30805 4.38084 4.78017 4.94753 4.95797 5.02122 5.15714 5.22310 5.28576 5.46378 5.60022 5.64958 5.71989 5.76461 5.87398 5.91162 6.01557 6.03721 6.07774 6.12799 6.14253 6.24374 6.32209 6.48447 6.53743 6.69259 6.87086 7.18649 7.30402 7.57401 8.06468 8.42358 8.74465 8.94025 9.49189 11.03265 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.019208 B = 0.003854 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.351241 B = 7263.264159 C = 7917.460526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.136 4.136 4 C -0.145 4.145 5 C 0.119 3.881 6 N -0.570 5.570 7 C 0.214 3.786 8 C -0.532 4.532 9 H 0.076 0.924 10 C 0.074 3.926 11 N -0.895 5.895 12 Si 0.873 3.127 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.264 1.264 16 C 0.616 3.384 17 O -0.519 6.519 18 C -0.130 4.130 19 C -0.067 4.067 20 C -0.105 4.105 21 C -0.103 4.103 22 C -0.136 4.136 23 C -0.255 4.255 24 S 0.210 5.790 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.043 0.957 37 H 0.038 0.962 38 H 0.265 0.735 39 H 0.150 0.850 40 H 0.143 0.857 41 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.656 9.933 -16.588 23.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.088 4.088 3 C -0.194 4.194 4 C -0.202 4.202 5 C -0.005 4.005 6 N -0.299 5.299 7 C 0.094 3.906 8 C -0.570 4.570 9 H 0.094 0.906 10 C -0.128 4.128 11 N -0.534 5.534 12 Si 0.700 3.300 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.189 1.189 16 C 0.403 3.597 17 O -0.397 6.397 18 C -0.138 4.138 19 C -0.071 4.071 20 C -0.222 4.222 21 C -0.134 4.134 22 C -0.168 4.168 23 C -0.392 4.392 24 S 0.480 5.520 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.168 0.832 40 H 0.161 0.839 41 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 11.495 8.975 -17.733 22.960 hybrid contribution 0.193 0.278 1.105 1.156 sum 11.688 9.253 -16.628 22.332 Atomic orbital electron populations 1.21986 0.94158 1.02704 1.01274 1.20988 0.96593 0.95408 0.95818 1.21780 1.00758 0.95006 1.01822 1.22077 1.00836 1.00474 0.96804 1.21636 0.98704 0.82286 0.97873 1.47745 1.22381 1.06426 1.53315 1.19892 0.79865 0.96984 0.93862 1.21319 0.96310 1.47057 0.92327 0.90601 1.24830 0.98909 0.94403 0.94679 1.69894 1.31700 1.46172 1.05596 0.86894 0.84685 0.79327 0.79107 1.19824 1.21014 1.18892 1.14764 0.80734 0.85324 0.78911 1.90900 1.70259 1.19189 1.59323 1.21090 0.94632 0.99118 0.98968 1.17716 0.91436 1.00690 0.97268 1.20421 0.92920 1.12290 0.96617 1.20849 0.90480 1.00626 1.01490 1.19929 1.00601 1.04180 0.92050 1.25241 1.02011 1.10577 1.01401 1.83258 1.03605 1.62680 1.02433 0.92276 0.93242 0.91697 0.92768 0.92665 0.92323 0.92625 0.92906 0.92594 0.89168 0.91188 0.93961 0.94367 0.92507 0.83248 0.83914 0.81577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 7.23 37.16 0.27 -1.79 16 2 C -0.09 -1.19 0.84 -154.50 -0.13 -1.32 16 3 C -0.14 -1.50 8.47 37.16 0.31 -1.18 16 4 C -0.14 -1.97 6.92 37.16 0.26 -1.71 16 5 C 0.12 1.96 4.55 -4.04 -0.02 1.94 16 6 N -0.57 -11.79 1.98 -177.89 -0.35 -12.14 16 7 C 0.21 5.09 3.13 -5.19 -0.02 5.08 16 8 C -0.53 -15.08 9.94 -34.44 -0.34 -15.42 16 9 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 10 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 11 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 12 Si 0.87 21.20 27.47 -169.99 -4.67 16.53 16 13 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 16 C 0.62 13.37 6.16 -14.33 -0.09 13.28 16 17 O -0.52 -13.34 16.68 5.11 0.09 -13.25 16 18 C -0.13 -2.34 9.33 -38.84 -0.36 -2.71 16 19 C -0.07 -1.04 12.30 -38.84 -0.48 -1.51 16 20 C -0.11 -1.31 6.34 -38.09 -0.24 -1.55 16 21 C -0.10 -1.10 10.26 -40.31 -0.41 -1.51 16 22 C -0.14 -1.17 10.15 -41.41 -0.42 -1.59 16 23 C -0.26 -2.06 10.92 29.20 0.32 -1.74 16 24 S 0.21 2.03 23.07 -107.50 -2.48 -0.44 16 25 H 0.06 0.84 8.08 -51.93 -0.42 0.42 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 1.07 5.99 -51.93 -0.31 0.76 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.88 6.00 -51.93 -0.31 0.57 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.74 6.03 -51.93 -0.31 0.43 16 34 H 0.09 1.51 8.07 -51.93 -0.42 1.10 16 35 H 0.07 1.08 6.89 -51.93 -0.36 0.72 16 36 H 0.04 0.94 5.10 -51.93 -0.26 0.68 16 37 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 40 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.17 0.91 8.06 -52.49 -0.42 0.48 16 LS Contribution 350.18 15.07 5.28 5.28 Total: -1.00 -32.78 350.18 -8.54 -41.32 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -5.72 Total: -0.96 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -1.45 Total: -9.70 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.42 Total: -38.77 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.09 Total: -13.25 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.48 Total: -0.44 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.78 -8.54 -41.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825727555.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.099 kcal (2) G-P(sol) polarization free energy of solvation -32.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds