Wall clock time and date at job start Tue Mar 31 2020 08:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46925 * 2 1 4 4 C 1.52998 * 109.47422 * 239.99486 * 2 1 3 5 5 C 1.53008 * 109.46661 * 119.99196 * 2 1 3 6 6 N 1.46492 * 109.47112 * 60.00547 * 5 2 1 7 7 C 1.46506 * 120.00190 * 269.99835 * 6 5 2 8 8 C 1.50699 * 109.46963 * 270.00171 * 7 6 5 9 9 H 1.08000 * 119.99823 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00077 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99741 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99788 * 359.97438 * 10 8 7 13 13 H 1.48494 * 109.47075 * 90.00039 * 12 10 8 14 14 H 1.48498 * 109.46723 * 209.99966 * 12 10 8 15 15 H 1.48500 * 109.47233 * 329.99819 * 12 10 8 16 16 C 1.34781 * 120.00440 * 89.99344 * 6 5 2 17 17 O 1.21785 * 120.00410 * 179.72181 * 16 6 5 18 18 C 1.43205 * 119.99554 * 0.02562 * 16 6 5 19 19 C 3.95167 * 139.99877 * 190.48739 * 2 1 3 20 20 C 4.92258 * 150.35922 * 206.39787 * 2 1 3 21 21 C 1.37041 * 125.47460 * 267.08424 * 20 19 18 22 22 C 1.37431 * 113.22240 * 179.97438 * 21 20 19 23 23 C 1.33870 * 115.12660 * 359.97438 * 22 21 20 24 24 S 1.70603 * 111.01571 * 359.74629 * 23 22 21 25 25 H 1.09000 * 109.47604 * 300.00619 * 1 2 3 26 26 H 1.09000 * 109.46970 * 60.00519 * 1 2 3 27 27 H 1.08998 * 109.46702 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46557 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.46446 * 299.99255 * 3 2 1 30 30 H 1.08993 * 109.47137 * 59.99449 * 3 2 1 31 31 H 1.08995 * 109.46842 * 300.00259 * 4 2 1 32 32 H 1.09000 * 109.47052 * 60.00045 * 4 2 1 33 33 H 1.08998 * 109.46902 * 180.02562 * 4 2 1 34 34 H 1.08994 * 109.47264 * 299.99922 * 5 2 1 35 35 H 1.09001 * 109.46439 * 180.02562 * 5 2 1 36 36 H 1.09003 * 109.46876 * 29.99864 * 7 6 5 37 37 H 1.09002 * 109.47433 * 149.99696 * 7 6 5 38 38 H 0.97007 * 119.99612 * 179.97438 * 11 10 8 39 39 H 1.07999 * 123.39413 * 359.97438 * 21 20 19 40 40 H 1.08000 * 122.43842 * 180.02562 * 22 21 20 41 41 H 1.07998 * 124.49126 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0400 -0.7211 1.2494 6 7 1.5517 -2.1023 1.2495 7 6 0.2715 -2.4267 1.8838 8 6 0.5023 -2.7745 3.3319 9 1 1.5025 -2.7562 3.7388 10 6 -0.5635 -3.1161 4.1371 11 7 -0.3619 -3.4202 5.4007 12 14 -2.2935 -3.1471 3.4333 13 1 -2.5854 -4.5005 2.8966 14 1 -3.2691 -2.8179 4.5035 15 1 -2.4014 -2.1473 2.3406 16 6 2.2801 -3.0747 0.6660 17 8 1.8766 -4.2237 0.6705 18 6 3.5316 -2.7577 0.0464 19 6 4.5572 -2.4977 -0.4624 20 6 5.8085 -2.1807 -1.0824 21 6 6.9573 -1.8310 -0.4220 22 6 8.0123 -1.5796 -1.2660 23 6 7.7425 -1.7174 -2.5700 24 16 6.1202 -2.1860 -2.8129 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9562 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6768 -1.7489 -1.2490 32 1 1.6768 -0.2076 -2.1392 33 1 3.1301 -0.7217 -1.2488 34 1 1.6766 -0.2072 2.1393 35 1 3.1300 -0.7207 1.2496 36 1 -0.3946 -1.5664 1.8185 37 1 -0.1817 -3.2767 1.3737 38 1 -1.1118 -3.6602 5.9673 39 1 7.0266 -1.7602 0.6534 40 1 8.9884 -1.2925 -0.9037 41 1 8.4583 -1.5579 -3.3628 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825727555.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:56 Heat of formation + Delta-G solvation = 27.723113 kcal Electronic energy + Delta-G solvation = -22611.723696 eV Core-core repulsion = 19391.152057 eV Total energy + Delta-G solvation = -3220.571639 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.25722 -38.86436 -38.53163 -35.83654 -35.00403 -34.39410 -31.05142 -29.90535 -28.19037 -28.12822 -27.22539 -26.12540 -24.92052 -22.55585 -20.80087 -20.22194 -19.37151 -19.17075 -18.34864 -17.55499 -16.86936 -16.74693 -16.11222 -15.57552 -15.20682 -15.04221 -14.89351 -14.69479 -14.50775 -14.29422 -13.83422 -13.74002 -13.59558 -13.49965 -13.08936 -12.92673 -12.69064 -12.60280 -12.54428 -12.22828 -12.18537 -11.99084 -11.86416 -11.75403 -11.72148 -11.47827 -11.41716 -11.29280 -10.82913 -9.61803 -9.54502 -9.40579 -8.34837 -6.40703 -0.53447 0.00483 0.85649 1.04608 1.30727 1.34448 1.37092 1.45096 1.85224 2.18221 2.30399 2.51900 2.96327 3.02644 3.80137 3.81442 3.94611 4.14304 4.18558 4.39383 4.46734 4.52141 4.58838 4.67507 4.74905 4.79874 4.83491 4.89684 4.91410 5.02926 5.05078 5.07002 5.15834 5.25097 5.30245 5.36062 5.41001 5.41412 5.51056 5.55270 6.00437 6.19603 6.42431 6.60260 7.03997 7.24409 8.82189 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.019208 B = 0.003854 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.351241 B = 7263.264159 C = 7917.460526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 C -0.129 4.129 4 C -0.138 4.138 5 C 0.114 3.886 6 N -0.571 5.571 7 C 0.227 3.773 8 C -0.541 4.541 9 H 0.028 0.972 10 C 0.015 3.985 11 N -0.943 5.943 12 Si 0.943 3.057 13 H -0.276 1.276 14 H -0.273 1.273 15 H -0.233 1.233 16 C 0.617 3.383 17 O -0.578 6.578 18 C -0.196 4.196 19 C -0.007 4.007 20 C -0.168 4.168 21 C -0.084 4.084 22 C -0.149 4.149 23 C -0.228 4.228 24 S 0.229 5.771 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.037 0.963 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.026 0.974 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.021 0.979 38 H 0.269 0.731 39 H 0.153 0.847 40 H 0.172 0.828 41 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.124 12.533 -19.561 27.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 C -0.187 4.187 4 C -0.195 4.195 5 C -0.008 4.008 6 N -0.298 5.298 7 C 0.105 3.895 8 C -0.580 4.580 9 H 0.046 0.954 10 C -0.183 4.183 11 N -0.583 5.583 12 Si 0.765 3.235 13 H -0.201 1.201 14 H -0.198 1.198 15 H -0.156 1.156 16 C 0.406 3.594 17 O -0.461 6.461 18 C -0.203 4.203 19 C -0.011 4.011 20 C -0.285 4.285 21 C -0.117 4.117 22 C -0.179 4.179 23 C -0.365 4.365 24 S 0.499 5.501 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.045 0.955 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.039 0.961 38 H 0.078 0.922 39 H 0.171 0.829 40 H 0.190 0.810 41 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 12.981 11.633 -20.719 27.076 hybrid contribution 0.074 -0.493 1.965 2.027 sum 13.055 11.140 -18.754 25.421 Atomic orbital electron populations 1.21985 0.94433 1.01248 1.02545 1.20961 0.96353 0.96850 0.94042 1.21734 1.01257 0.92659 1.03015 1.22008 1.00929 0.98974 0.97596 1.21906 0.99301 0.80151 0.99455 1.47745 1.21405 1.08172 1.52490 1.19571 0.81874 0.97074 0.90934 1.21536 0.94376 1.47298 0.94782 0.95382 1.25811 1.03993 0.93658 0.94860 1.70047 1.33449 1.47475 1.07312 0.85784 0.78393 0.79907 0.79394 1.20130 1.19760 1.15632 1.15080 0.81614 0.84510 0.78200 1.90832 1.72043 1.21367 1.61840 1.20210 0.94972 1.03566 1.01587 1.18149 0.90876 0.97549 0.94547 1.20613 0.92257 1.16870 0.98746 1.21150 0.90317 0.98047 1.02205 1.20188 1.01197 1.04558 0.91910 1.25757 1.01396 1.07146 1.02210 1.83260 1.04799 1.62225 0.99782 0.92257 0.90715 0.94433 0.91998 0.90701 0.91900 0.95516 0.90691 0.92366 0.89849 0.90397 0.91624 0.96078 0.92158 0.82897 0.81049 0.78147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 7.23 71.98 0.52 -3.41 16 2 C -0.08 -2.13 0.84 -52.18 -0.04 -2.17 16 3 C -0.13 -2.48 8.47 71.98 0.61 -1.87 16 4 C -0.14 -3.62 6.92 71.98 0.50 -3.12 16 5 C 0.11 3.85 4.55 86.38 0.39 4.25 16 6 N -0.57 -24.95 1.98 -834.91 -1.65 -26.60 16 7 C 0.23 11.27 3.13 85.63 0.27 11.53 16 8 C -0.54 -32.47 9.94 25.60 0.25 -32.21 16 9 H 0.03 1.89 8.06 -2.91 -0.02 1.86 16 10 C 0.02 0.90 5.47 84.66 0.46 1.37 16 11 N -0.94 -60.13 13.96 21.45 0.30 -59.83 16 12 Si 0.94 44.43 27.47 68.60 1.88 46.31 16 13 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 14 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 15 H -0.23 -9.74 6.54 99.48 0.65 -9.09 16 16 C 0.62 28.72 6.16 85.49 0.53 29.25 16 17 O -0.58 -32.20 16.68 -4.62 -0.08 -32.28 16 18 C -0.20 -7.44 9.33 30.02 0.28 -7.16 16 19 C -0.01 -0.23 12.30 30.02 0.37 0.14 16 20 C -0.17 -3.93 6.34 23.24 0.15 -3.78 16 21 C -0.08 -1.59 10.26 21.80 0.22 -1.36 16 22 C -0.15 -1.93 10.15 21.09 0.21 -1.72 16 23 C -0.23 -2.61 10.92 66.83 0.73 -1.88 16 24 S 0.23 3.79 23.07 -56.49 -1.30 2.49 16 25 H 0.06 1.58 8.08 -2.39 -0.02 1.57 16 26 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.04 1.21 5.99 -2.39 -0.01 1.20 16 28 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.03 0.85 6.00 -2.39 -0.01 0.84 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.06 1.47 6.03 -2.39 -0.01 1.46 16 34 H 0.08 2.88 8.07 -2.39 -0.02 2.86 16 35 H 0.08 2.47 6.89 -2.39 -0.02 2.45 16 36 H 0.07 2.95 5.10 -2.39 -0.01 2.93 16 37 H 0.02 1.13 6.85 -2.39 -0.02 1.11 16 38 H 0.27 15.91 8.31 -92.70 -0.77 15.14 16 39 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 40 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 41 H 0.20 0.96 8.06 -2.91 -0.02 0.94 16 Total: -1.00 -77.79 350.18 5.58 -72.21 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 0.98 Total: 9.84 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 5.45 Total: -12.15 kcal Atomic # 7 Polarization: -85.07 SS G_CDS: -1.35 Total: -86.43 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -0.08 Total: -32.28 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.88 Total: 46.31 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -1.30 Total: 2.49 kcal Total: -77.79 5.58 -72.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825727555.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.938 kcal (2) G-P(sol) polarization free energy of solvation -77.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds