Wall clock time and date at job start Tue Mar 31 2020 08:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.47072 * 120.00052 * 2 1 4 4 O 1.21637 * 119.99851 * 180.02562 * 3 2 1 5 5 N 1.34781 * 119.99666 * 0.02562 * 3 2 1 6 6 C 1.39994 * 119.99588 * 175.62370 * 5 3 2 7 7 C 1.38731 * 120.07791 * 34.62424 * 6 5 3 8 8 C 1.38180 * 120.02172 * 179.71761 * 7 6 5 9 9 C 1.38562 * 120.17251 * 0.54942 * 8 7 6 10 10 F 1.35102 * 119.92079 * 179.74134 * 9 8 7 11 11 C 1.38341 * 120.16265 * 359.73061 * 9 8 7 12 12 C 1.38741 * 119.97587 * 359.97438 * 11 9 8 13 13 O 1.35775 * 120.08493 * 179.97438 * 12 11 9 14 14 C 1.34799 * 117.00356 * 5.42850 * 13 12 11 15 15 H 1.07999 * 120.00136 * 354.94825 * 14 13 12 16 16 C 1.38642 * 120.00328 * 174.95450 * 14 13 12 17 17 N 1.31568 * 119.99469 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00129 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.46972 * 89.99809 * 18 16 14 20 20 H 1.48500 * 109.46873 * 209.99720 * 18 16 14 21 21 H 1.48496 * 109.47200 * 329.99845 * 18 16 14 22 22 C 1.33017 * 120.00050 * 180.02562 * 2 1 3 23 23 C 1.51573 * 135.78167 * 359.97438 * 22 2 1 24 24 C 1.53841 * 86.75865 * 205.13436 * 23 22 2 25 25 C 1.51580 * 135.78101 * 179.97438 * 22 2 1 26 26 H 1.09006 * 109.46800 * 269.99724 * 1 2 3 27 27 H 1.09003 * 109.46877 * 29.99665 * 1 2 3 28 28 H 1.08994 * 109.46965 * 149.99924 * 1 2 3 29 29 H 0.96992 * 120.00176 * 355.63358 * 5 3 2 30 30 H 1.08009 * 119.99365 * 359.97438 * 7 6 5 31 31 H 1.07999 * 119.91878 * 180.27729 * 8 7 6 32 32 H 1.07998 * 120.01204 * 180.02562 * 11 9 8 33 33 H 0.97003 * 119.99939 * 180.02562 * 17 16 14 34 34 H 1.09002 * 113.66609 * 90.66925 * 23 22 2 35 35 H 1.09001 * 113.66710 * 319.60243 * 23 22 2 36 36 H 1.09001 * 113.65886 * 89.68341 * 24 23 22 37 37 H 1.08997 * 113.66038 * 220.73552 * 24 23 22 38 38 H 1.09004 * 113.66658 * 40.40571 * 25 22 2 39 39 H 1.08995 * 113.67042 * 269.33102 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2424 1.2737 0.0000 4 8 3.4587 1.2736 -0.0005 5 7 1.5684 2.4409 0.0005 6 6 2.2654 3.6515 0.0930 7 6 3.5106 3.7842 -0.5039 8 6 4.1950 4.9815 -0.4168 9 6 3.6459 6.0487 0.2756 10 9 4.3218 7.2153 0.3620 11 6 2.4072 5.9227 0.8786 12 6 1.7118 4.7254 0.7901 13 8 0.4961 4.5991 1.3815 14 6 -0.0295 5.7063 1.9427 15 1 0.5477 6.6183 1.9810 16 6 -1.3110 5.6743 2.4708 17 7 -2.0142 4.5633 2.4238 18 14 -2.0390 7.2084 3.2491 19 1 -2.7532 7.9975 2.2135 20 1 -2.9926 6.8163 4.3178 21 1 -0.9501 8.0309 3.8346 22 6 2.1721 -1.1520 -0.0005 23 6 1.7998 -2.6213 -0.0007 24 6 3.1693 -2.8786 0.6511 25 6 3.6308 -1.5642 -0.0012 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8901 -0.5138 28 1 -0.3633 -0.8899 -0.5138 29 1 0.6006 2.4421 -0.0631 30 1 3.9436 2.9528 -1.0404 31 1 5.1623 5.0844 -0.8860 32 1 1.9814 6.7562 1.4174 33 1 -2.9110 4.5410 2.7929 34 1 1.7033 -3.0480 -0.9990 35 1 0.9556 -2.8588 0.6466 36 1 3.1491 -2.8424 1.7403 37 1 3.6788 -3.7613 0.2646 38 1 4.2588 -0.9517 0.6459 39 1 4.0483 -1.6942 -0.9995 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827090508.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:03 Heat of formation + Delta-G solvation = -44.437741 kcal Electronic energy + Delta-G solvation = -24414.756293 eV Core-core repulsion = 20624.842348 eV Total energy + Delta-G solvation = -3789.913944 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.25527 -40.22648 -39.02833 -38.02535 -36.27528 -34.17664 -32.85030 -32.41220 -29.43004 -28.25958 -26.54565 -25.57953 -25.49042 -23.53775 -22.19541 -21.51684 -20.13047 -18.39631 -18.34479 -17.47537 -16.63805 -16.36758 -15.60287 -15.29791 -15.24435 -14.97870 -14.85009 -14.37809 -14.24212 -13.71284 -13.52828 -13.49635 -13.26353 -12.88631 -12.51505 -12.41732 -12.29658 -12.08610 -11.91090 -11.66442 -11.58492 -11.36551 -11.00695 -10.91257 -10.73728 -10.56172 -10.48382 -9.78918 -9.62422 -9.23067 -8.96889 -8.77912 -7.88536 -7.11379 -6.61221 -4.19085 1.39120 1.93535 2.12112 3.05961 3.07352 3.11775 3.43947 3.59284 3.84705 4.34874 4.42693 4.47409 4.69295 4.85133 4.94899 5.03377 5.07883 5.11448 5.32566 5.50132 5.57940 5.58300 5.69275 5.73337 5.74922 5.84171 5.92263 6.04687 6.09328 6.18709 6.20965 6.36592 6.55346 6.70287 6.80269 6.91112 6.94483 7.06559 7.20324 7.64564 7.82275 7.96788 8.59391 8.84634 9.45888 10.55679 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.012315 B = 0.004542 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.020610 B = 6163.741352 C = 8194.064474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.155 4.155 3 C 0.552 3.448 4 O -0.537 6.537 5 N -0.645 5.645 6 C 0.058 3.942 7 C -0.049 4.049 8 C -0.230 4.230 9 C 0.130 3.870 10 F -0.151 7.151 11 C -0.259 4.259 12 C 0.158 3.842 13 O -0.167 6.167 14 C -0.394 4.394 15 H 0.094 0.906 16 C 0.044 3.956 17 N -0.858 5.858 18 Si 0.942 3.058 19 H -0.272 1.272 20 H -0.276 1.276 21 H -0.266 1.266 22 C -0.077 4.077 23 C -0.105 4.105 24 C -0.141 4.141 25 C -0.101 4.101 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.415 0.585 30 H 0.142 0.858 31 H 0.123 0.877 32 H 0.143 0.857 33 H 0.272 0.728 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.365 -10.239 -5.080 12.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.158 4.158 3 C 0.342 3.658 4 O -0.417 6.417 5 N -0.289 5.289 6 C -0.036 4.036 7 C -0.070 4.070 8 C -0.250 4.250 9 C 0.110 3.890 10 F -0.130 7.130 11 C -0.280 4.280 12 C 0.102 3.898 13 O -0.070 6.070 14 C -0.469 4.469 15 H 0.112 0.888 16 C -0.161 4.161 17 N -0.492 5.492 18 Si 0.767 3.233 19 H -0.197 1.197 20 H -0.202 1.202 21 H -0.191 1.191 22 C -0.079 4.079 23 C -0.142 4.142 24 C -0.179 4.179 25 C -0.137 4.137 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.252 0.748 30 H 0.159 0.841 31 H 0.141 0.859 32 H 0.160 0.840 33 H 0.082 0.918 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.798 -10.504 -4.939 12.560 hybrid contribution -0.802 1.178 0.536 1.522 sum 3.996 -9.326 -4.403 11.061 Atomic orbital electron populations 1.20707 0.90244 1.02779 1.03106 1.20492 0.96046 0.91138 1.08155 1.18269 0.87223 0.83686 0.76596 1.90711 1.13379 1.87455 1.50128 1.43076 1.11089 1.03566 1.71175 1.16886 0.95847 0.85614 1.05262 1.20659 0.92683 0.96714 0.96902 1.20486 1.02605 0.93221 1.08701 1.17466 0.90911 0.81365 0.99245 1.91411 1.79847 1.46942 1.94820 1.20852 0.96228 1.00366 1.10554 1.18842 0.87928 0.92004 0.91003 1.83931 1.25884 1.35954 1.61199 1.21362 0.98924 0.89314 1.37330 0.88820 1.25280 0.95007 0.98879 0.96975 1.70011 1.10993 1.26006 1.42216 0.85681 0.79163 0.79705 0.78799 1.19725 1.20153 1.19055 1.23275 0.97758 0.93450 0.93424 1.22311 0.98386 0.91861 1.01600 1.22815 0.96477 0.98036 1.00545 1.22244 0.94059 0.95719 1.01702 0.90586 0.91227 0.91379 0.74781 0.84067 0.85940 0.83950 0.91815 0.88462 0.90424 0.89892 0.90830 0.89480 0.88752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 9.59 36.01 0.35 -1.06 16 2 C -0.16 -2.29 6.00 -102.85 -0.62 -2.91 16 3 C 0.55 10.03 7.59 -12.68 -0.10 9.93 16 4 O -0.54 -10.69 12.52 5.25 0.07 -10.62 16 5 N -0.64 -12.38 5.14 -10.79 -0.06 -12.44 16 6 C 0.06 1.24 6.33 -83.48 -0.53 0.71 16 7 C -0.05 -0.97 8.69 -39.42 -0.34 -1.31 16 8 C -0.23 -4.33 10.02 -39.48 -0.40 -4.73 16 9 C 0.13 2.63 7.29 -39.42 -0.29 2.34 16 10 F -0.15 -2.93 17.26 2.25 0.04 -2.89 16 11 C -0.26 -5.72 9.14 -39.36 -0.36 -6.08 16 12 C 0.16 3.70 6.67 -38.93 -0.26 3.44 16 13 O -0.17 -4.39 9.32 0.06 0.00 -4.39 16 14 C -0.39 -10.39 9.49 30.88 0.29 -10.10 16 15 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 16 C 0.04 1.13 5.49 -17.52 -0.10 1.04 16 17 N -0.86 -23.29 13.67 55.48 0.76 -22.53 16 18 Si 0.94 19.65 29.55 -169.99 -5.02 14.62 16 19 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 20 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 C -0.08 -1.00 6.56 -100.38 -0.66 -1.66 16 23 C -0.10 -0.98 7.76 -27.02 -0.21 -1.19 16 24 C -0.14 -1.31 8.11 -25.95 -0.21 -1.52 16 25 C -0.10 -1.20 7.05 -27.02 -0.19 -1.39 16 26 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.07 0.89 6.65 -51.93 -0.35 0.54 16 28 H 0.07 0.70 7.88 -51.93 -0.41 0.29 16 29 H 0.41 7.65 6.64 -40.82 -0.27 7.38 16 30 H 0.14 2.67 6.19 -52.48 -0.32 2.34 16 31 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 32 H 0.14 3.13 5.64 -52.49 -0.30 2.83 16 33 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 1.22 7.48 -51.93 -0.39 0.83 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 335.47 15.07 5.06 5.06 Total: -1.00 -29.35 335.47 -7.17 -36.53 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -4.40 Total: 11.15 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -3.61 Total: -14.49 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.70 Total: -34.97 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: 0.07 Total: -15.01 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.04 Total: -2.89 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.35 -7.17 -36.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827090508.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.908 kcal (2) G-P(sol) polarization free energy of solvation -29.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds