Wall clock time and date at job start Tue Mar 31 2020 08:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.47072 * 120.00052 * 2 1 4 4 O 1.21637 * 119.99851 * 180.02562 * 3 2 1 5 5 N 1.34781 * 119.99666 * 0.02562 * 3 2 1 6 6 C 1.39994 * 119.99588 * 175.62370 * 5 3 2 7 7 C 1.38731 * 120.07791 * 34.62424 * 6 5 3 8 8 C 1.38180 * 120.02172 * 179.71761 * 7 6 5 9 9 C 1.38562 * 120.17251 * 0.54942 * 8 7 6 10 10 F 1.35102 * 119.92079 * 179.74134 * 9 8 7 11 11 C 1.38341 * 120.16265 * 359.73061 * 9 8 7 12 12 C 1.38741 * 119.97587 * 359.97438 * 11 9 8 13 13 O 1.35775 * 120.08493 * 179.97438 * 12 11 9 14 14 C 1.34799 * 117.00356 * 5.42850 * 13 12 11 15 15 H 1.07999 * 120.00136 * 354.94825 * 14 13 12 16 16 C 1.38642 * 120.00328 * 174.95450 * 14 13 12 17 17 N 1.31568 * 119.99469 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00129 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.46972 * 89.99809 * 18 16 14 20 20 H 1.48500 * 109.46873 * 209.99720 * 18 16 14 21 21 H 1.48496 * 109.47200 * 329.99845 * 18 16 14 22 22 C 1.33017 * 120.00050 * 180.02562 * 2 1 3 23 23 C 1.51573 * 135.78167 * 359.97438 * 22 2 1 24 24 C 1.53841 * 86.75865 * 205.13436 * 23 22 2 25 25 C 1.51580 * 135.78101 * 179.97438 * 22 2 1 26 26 H 1.09006 * 109.46800 * 269.99724 * 1 2 3 27 27 H 1.09003 * 109.46877 * 29.99665 * 1 2 3 28 28 H 1.08994 * 109.46965 * 149.99924 * 1 2 3 29 29 H 0.96992 * 120.00176 * 355.63358 * 5 3 2 30 30 H 1.08009 * 119.99365 * 359.97438 * 7 6 5 31 31 H 1.07999 * 119.91878 * 180.27729 * 8 7 6 32 32 H 1.07998 * 120.01204 * 180.02562 * 11 9 8 33 33 H 0.97003 * 119.99939 * 180.02562 * 17 16 14 34 34 H 1.09002 * 113.66609 * 90.66925 * 23 22 2 35 35 H 1.09001 * 113.66710 * 319.60243 * 23 22 2 36 36 H 1.09001 * 113.65886 * 89.68341 * 24 23 22 37 37 H 1.08997 * 113.66038 * 220.73552 * 24 23 22 38 38 H 1.09004 * 113.66658 * 40.40571 * 25 22 2 39 39 H 1.08995 * 113.67042 * 269.33102 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2424 1.2737 0.0000 4 8 3.4587 1.2736 -0.0005 5 7 1.5684 2.4409 0.0005 6 6 2.2654 3.6515 0.0930 7 6 3.5106 3.7842 -0.5039 8 6 4.1950 4.9815 -0.4168 9 6 3.6459 6.0487 0.2756 10 9 4.3218 7.2153 0.3620 11 6 2.4072 5.9227 0.8786 12 6 1.7118 4.7254 0.7901 13 8 0.4961 4.5991 1.3815 14 6 -0.0295 5.7063 1.9427 15 1 0.5477 6.6183 1.9810 16 6 -1.3110 5.6743 2.4708 17 7 -2.0142 4.5633 2.4238 18 14 -2.0390 7.2084 3.2491 19 1 -2.7532 7.9975 2.2135 20 1 -2.9926 6.8163 4.3178 21 1 -0.9501 8.0309 3.8346 22 6 2.1721 -1.1520 -0.0005 23 6 1.7998 -2.6213 -0.0007 24 6 3.1693 -2.8786 0.6511 25 6 3.6308 -1.5642 -0.0012 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8901 -0.5138 28 1 -0.3633 -0.8899 -0.5138 29 1 0.6006 2.4421 -0.0631 30 1 3.9436 2.9528 -1.0404 31 1 5.1623 5.0844 -0.8860 32 1 1.9814 6.7562 1.4174 33 1 -2.9110 4.5410 2.7929 34 1 1.7033 -3.0480 -0.9990 35 1 0.9556 -2.8588 0.6466 36 1 3.1491 -2.8424 1.7403 37 1 3.6788 -3.7613 0.2646 38 1 4.2588 -0.9517 0.6459 39 1 4.0483 -1.6942 -0.9995 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827090508.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:02 Heat of formation + Delta-G solvation = -60.345393 kcal Electronic energy + Delta-G solvation = -24415.446100 eV Core-core repulsion = 20624.842348 eV Total energy + Delta-G solvation = -3790.603752 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.86179 -41.73395 -40.47957 -39.24893 -37.96341 -35.68425 -34.33497 -33.97435 -31.12988 -29.88801 -27.53160 -27.40813 -26.42265 -24.88869 -23.79837 -22.94697 -21.40960 -20.16917 -19.85888 -19.02863 -18.14971 -17.59490 -17.05583 -16.92257 -16.58839 -16.47020 -16.10321 -15.99044 -15.71675 -15.41407 -15.24504 -14.93953 -14.67786 -14.10648 -13.93900 -13.82472 -13.45678 -13.30845 -13.24917 -13.03135 -12.82942 -12.59316 -12.45381 -12.35863 -12.15889 -11.83621 -11.67201 -11.44078 -11.16577 -10.84335 -10.63960 -9.85342 -9.58506 -8.79789 -8.52147 -6.18961 0.03304 0.41148 0.48676 1.36516 1.43574 1.51782 2.04121 2.13283 2.20996 2.65822 3.03522 3.13831 3.38518 3.42249 3.54670 3.83036 3.88701 3.97360 4.13744 4.27308 4.32870 4.40780 4.58823 4.72003 4.75457 4.77657 4.82398 4.90221 5.00015 5.01354 5.06043 5.10982 5.18820 5.26728 5.31916 5.34940 5.39596 5.52177 5.72079 5.91624 6.01008 6.48098 6.91669 7.11946 7.60012 8.68195 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.012315 B = 0.004542 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.020610 B = 6163.741352 C = 8194.064474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.187 4.187 3 C 0.548 3.452 4 O -0.561 6.561 5 N -0.650 5.650 6 C 0.056 3.944 7 C -0.051 4.051 8 C -0.205 4.205 9 C 0.125 3.875 10 F -0.143 7.143 11 C -0.265 4.265 12 C 0.131 3.869 13 O -0.201 6.201 14 C -0.420 4.420 15 H 0.099 0.901 16 C -0.007 4.007 17 N -0.903 5.903 18 Si 1.012 2.988 19 H -0.263 1.263 20 H -0.270 1.270 21 H -0.259 1.259 22 C -0.069 4.069 23 C -0.093 4.093 24 C -0.130 4.130 25 C -0.112 4.112 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.096 0.904 29 H 0.415 0.585 30 H 0.153 0.847 31 H 0.159 0.841 32 H 0.137 0.863 33 H 0.276 0.724 34 H 0.124 0.876 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.059 0.941 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.224 -11.456 -5.829 13.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.190 4.190 3 C 0.340 3.660 4 O -0.442 6.442 5 N -0.294 5.294 6 C -0.039 4.039 7 C -0.071 4.071 8 C -0.224 4.224 9 C 0.105 3.895 10 F -0.122 7.122 11 C -0.286 4.286 12 C 0.078 3.922 13 O -0.106 6.106 14 C -0.495 4.495 15 H 0.116 0.884 16 C -0.207 4.207 17 N -0.539 5.539 18 Si 0.832 3.168 19 H -0.187 1.187 20 H -0.194 1.194 21 H -0.183 1.183 22 C -0.071 4.071 23 C -0.129 4.129 24 C -0.168 4.168 25 C -0.149 4.149 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.115 0.885 29 H 0.253 0.747 30 H 0.170 0.830 31 H 0.177 0.823 32 H 0.155 0.845 33 H 0.085 0.915 34 H 0.142 0.858 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.119 0.881 38 H 0.078 0.922 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.691 -11.731 -5.708 14.233 hybrid contribution -0.784 1.438 0.645 1.760 sum 4.907 -10.293 -5.063 12.476 Atomic orbital electron populations 1.20664 0.88993 1.03712 1.02734 1.20425 0.96900 0.89977 1.11703 1.18915 0.87246 0.84363 0.75447 1.90674 1.14314 1.87834 1.51348 1.43199 1.11168 1.03503 1.71529 1.17209 0.96362 0.85952 1.04376 1.20860 0.92062 0.97434 0.96724 1.20884 1.03318 0.91873 1.06368 1.17450 0.90449 0.82124 0.99470 1.91431 1.79465 1.46532 1.94776 1.20932 0.97053 0.99899 1.10679 1.19203 0.87716 0.93334 0.91986 1.83913 1.27301 1.36334 1.63096 1.21769 0.99735 0.89804 1.38211 0.88351 1.26395 0.94997 1.02140 0.97190 1.70122 1.11577 1.28228 1.43985 0.84667 0.78389 0.75716 0.78033 1.18748 1.19419 1.18276 1.23900 0.98843 0.94894 0.89494 1.22445 0.98837 0.88363 1.03301 1.22790 0.96286 0.97374 1.00314 1.22412 0.93126 0.97074 1.02257 0.91620 0.92169 0.88538 0.74741 0.82986 0.82322 0.84516 0.91524 0.85798 0.89153 0.90220 0.88128 0.92190 0.87417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.62 9.59 71.24 0.68 -1.94 16 2 C -0.19 -5.50 6.00 -18.71 -0.11 -5.61 16 3 C 0.55 20.31 7.59 86.56 0.66 20.96 16 4 O -0.56 -22.52 12.52 -4.15 -0.05 -22.57 16 5 N -0.65 -25.92 5.14 -306.30 -1.57 -27.49 16 6 C 0.06 2.43 6.33 38.26 0.24 2.67 16 7 C -0.05 -1.95 8.69 22.37 0.19 -1.75 16 8 C -0.20 -7.30 10.02 22.33 0.22 -7.08 16 9 C 0.12 4.93 7.29 22.37 0.16 5.09 16 10 F -0.14 -5.30 17.26 44.97 0.78 -4.53 16 11 C -0.26 -11.91 9.14 22.41 0.20 -11.71 16 12 C 0.13 6.37 6.67 22.69 0.15 6.52 16 13 O -0.20 -11.16 9.32 -22.70 -0.21 -11.37 16 14 C -0.42 -23.08 9.49 67.92 0.64 -22.44 16 15 H 0.10 5.09 5.20 -2.91 -0.02 5.07 16 16 C -0.01 -0.38 5.49 84.83 0.47 0.08 16 17 N -0.90 -50.87 13.67 21.61 0.30 -50.58 16 18 Si 1.01 40.87 29.55 68.60 2.03 42.89 16 19 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 20 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 21 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 22 C -0.07 -1.69 6.56 -17.11 -0.11 -1.80 16 23 C -0.09 -1.41 7.76 30.41 0.24 -1.17 16 24 C -0.13 -2.02 8.11 31.10 0.25 -1.77 16 25 C -0.11 -2.50 7.05 30.40 0.21 -2.28 16 26 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 27 H 0.06 1.59 6.65 -2.39 -0.02 1.57 16 28 H 0.10 1.81 7.88 -2.39 -0.02 1.79 16 29 H 0.41 16.28 6.64 -92.71 -0.62 15.67 16 30 H 0.15 5.59 6.19 -2.91 -0.02 5.57 16 31 H 0.16 4.54 8.06 -2.91 -0.02 4.52 16 32 H 0.14 6.20 5.64 -2.91 -0.02 6.19 16 33 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 34 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.06 1.68 7.48 -2.39 -0.02 1.66 16 39 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -65.92 335.47 5.86 -60.06 By element: Atomic # 1 Polarization: 35.30 SS G_CDS: 0.49 Total: 35.79 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: 4.11 Total: -22.21 kcal Atomic # 7 Polarization: -76.79 SS G_CDS: -1.28 Total: -78.07 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -0.26 Total: -33.94 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 0.78 Total: -4.53 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.89 kcal Total: -65.92 5.86 -60.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827090508.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.285 kcal (2) G-P(sol) polarization free energy of solvation -65.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds