Wall clock time and date at job start Tue Mar 31 2020 08:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47260 * 2 1 4 4 C 1.53001 * 109.47237 * 239.99776 * 2 1 3 5 5 C 1.47209 * 109.46964 * 119.99842 * 2 1 3 6 6 C 2.64603 * 109.46890 * 119.99815 * 2 1 3 7 7 C 4.07804 * 109.46954 * 119.99879 * 2 1 3 8 8 O 1.21635 * 120.00160 * 36.56490 * 7 6 5 9 9 N 1.34779 * 119.99646 * 216.83752 * 7 6 5 10 10 C 1.39993 * 119.99971 * 175.34841 * 9 7 6 11 11 C 1.38738 * 120.07678 * 34.61050 * 10 9 7 12 12 C 1.38176 * 120.01748 * 179.76936 * 11 10 9 13 13 C 1.38559 * 120.17895 * 0.51027 * 12 11 10 14 14 F 1.35107 * 119.92018 * 179.76680 * 13 12 11 15 15 C 1.38345 * 120.15998 * 359.74923 * 13 12 11 16 16 C 1.38739 * 119.97610 * 359.97438 * 15 13 12 17 17 O 1.35771 * 120.08712 * 180.02562 * 16 15 13 18 18 C 1.34811 * 116.99578 * 5.42771 * 17 16 15 19 19 H 1.07991 * 120.00514 * 354.95785 * 18 17 16 20 20 C 1.38644 * 119.99395 * 174.95294 * 18 17 16 21 21 N 1.31567 * 120.00050 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00085 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46806 * 89.99998 * 22 20 18 24 24 H 1.48497 * 109.47118 * 209.99691 * 22 20 18 25 25 H 1.48499 * 109.47294 * 330.00185 * 22 20 18 26 26 H 1.09004 * 109.47409 * 300.00371 * 1 2 3 27 27 H 1.08997 * 109.47097 * 60.00262 * 1 2 3 28 28 H 1.09001 * 109.47365 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47023 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.46851 * 299.99888 * 3 2 1 31 31 H 1.09007 * 109.46767 * 59.99758 * 3 2 1 32 32 H 1.09001 * 109.46967 * 300.00273 * 4 2 1 33 33 H 1.08997 * 109.47108 * 59.99969 * 4 2 1 34 34 H 1.08995 * 109.47037 * 180.02562 * 4 2 1 35 35 H 0.96998 * 120.00343 * 355.35369 * 9 7 6 36 36 H 1.08001 * 119.99234 * 0.02993 * 11 10 9 37 37 H 1.07999 * 119.91045 * 180.23675 * 12 11 10 38 38 H 1.07994 * 120.00998 * 180.02562 * 15 13 12 39 39 H 0.96992 * 120.00334 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0206 -0.6939 1.2020 6 6 2.4119 -1.2473 2.1605 7 6 2.8892 -1.9224 3.3298 8 8 2.6969 -3.1159 3.4641 9 7 3.5467 -1.2341 4.2840 10 6 3.9277 -1.8722 5.4704 11 6 4.3105 -3.2056 5.4507 12 6 4.6909 -3.8328 6.6217 13 6 4.6814 -3.1367 7.8196 14 9 5.0499 -3.7565 8.9622 15 6 4.2959 -1.8083 7.8486 16 6 3.9182 -1.1704 6.6759 17 8 3.5399 0.1333 6.7016 18 6 3.6605 0.7823 7.8770 19 1 3.9660 0.2443 8.7621 20 6 3.3922 2.1406 7.9494 21 7 3.5102 2.7743 9.0964 22 14 2.8630 3.0711 6.4185 23 1 1.3827 3.0373 6.3057 24 1 3.3201 4.4808 6.5133 25 1 3.4654 2.4348 5.2195 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 -1.7490 -1.2492 33 1 1.6767 -0.2075 -2.1392 34 1 3.1300 -0.7217 -1.2489 35 1 3.7558 -0.2966 4.1488 36 1 4.3152 -3.7522 4.5193 37 1 4.9922 -4.8698 6.6038 38 1 4.2898 -1.2679 8.7836 39 1 3.3222 3.7244 9.1472 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837469900.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:32:19 Heat of formation + Delta-G solvation = -38.131864 kcal Electronic energy + Delta-G solvation = -23821.646952 eV Core-core repulsion = 20032.006451 eV Total energy + Delta-G solvation = -3789.640501 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.33753 -40.30515 -38.79836 -37.76772 -36.53807 -34.32383 -32.56688 -32.34536 -29.68356 -28.67057 -27.63987 -27.61841 -25.53554 -24.35945 -22.33298 -21.61426 -20.72978 -18.71105 -18.28349 -17.78608 -16.88188 -16.18148 -15.62996 -15.39124 -15.09430 -14.90790 -14.71661 -14.56531 -14.40194 -14.16480 -13.87348 -13.59843 -13.35992 -12.78725 -12.76472 -12.51867 -12.40861 -12.06533 -12.02646 -11.96024 -11.62894 -11.58805 -11.48282 -11.02734 -10.88469 -10.56581 -10.45013 -10.38873 -10.05969 -9.82376 -9.63897 -9.05351 -8.05237 -7.35706 -6.59248 -4.26889 1.36239 1.88908 1.95815 2.25620 3.07411 3.10986 3.13990 3.19880 3.54740 4.04973 4.06432 4.18155 4.46099 4.58398 4.60706 4.69131 4.88916 4.92511 5.16428 5.26818 5.28697 5.42158 5.45515 5.51136 5.52124 5.63356 5.70437 5.76402 5.84558 5.93483 5.94596 5.98868 6.32946 6.65346 6.74951 6.78783 6.85609 7.16342 7.38596 7.54184 7.63000 7.81592 8.22668 8.73342 9.27558 10.47636 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.010441 B = 0.004765 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.218138 B = 5875.055969 C = 8323.753861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.037 3.963 3 C -0.144 4.144 4 C -0.141 4.141 5 C -0.072 4.072 6 C -0.214 4.214 7 C 0.629 3.371 8 O -0.517 6.517 9 N -0.638 5.638 10 C 0.053 3.947 11 C -0.047 4.047 12 C -0.222 4.222 13 C 0.134 3.866 14 F -0.147 7.147 15 C -0.246 4.246 16 C 0.169 3.831 17 O -0.206 6.206 18 C -0.393 4.393 19 H 0.110 0.890 20 C 0.068 3.932 21 N -0.869 5.869 22 Si 0.905 3.095 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.260 1.260 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.415 0.585 36 H 0.144 0.856 37 H 0.127 0.873 38 H 0.151 0.849 39 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.902 -3.244 -17.199 17.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.037 3.963 3 C -0.201 4.201 4 C -0.198 4.198 5 C -0.074 4.074 6 C -0.217 4.217 7 C 0.417 3.583 8 O -0.394 6.394 9 N -0.282 5.282 10 C -0.041 4.041 11 C -0.067 4.067 12 C -0.243 4.243 13 C 0.115 3.885 14 F -0.126 7.126 15 C -0.266 4.266 16 C 0.115 3.885 17 O -0.110 6.110 18 C -0.468 4.468 19 H 0.128 0.872 20 C -0.137 4.137 21 N -0.505 5.505 22 Si 0.730 3.270 23 H -0.197 1.197 24 H -0.205 1.205 25 H -0.185 1.185 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.251 0.749 36 H 0.162 0.838 37 H 0.145 0.855 38 H 0.168 0.832 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.154 -3.695 -17.102 17.628 hybrid contribution -0.081 0.892 -0.048 0.897 sum -2.235 -2.803 -17.150 17.520 Atomic orbital electron populations 1.21912 0.92212 1.02954 1.02897 1.17943 0.96073 0.94389 0.87899 1.21930 1.01865 0.93324 1.02968 1.21902 1.01767 1.00685 0.95475 1.22467 0.94483 0.96309 0.94148 1.20578 1.04005 1.00614 0.96507 1.14665 0.77682 0.85618 0.80313 1.90818 1.56998 1.13810 1.77788 1.42916 1.55010 1.14858 1.15374 1.16831 1.10785 0.93544 0.82924 1.20671 0.95214 0.92185 0.98672 1.20549 1.11698 1.00861 0.91156 1.17486 0.98720 0.90766 0.81555 1.91437 1.89195 1.82815 1.49143 1.20981 1.11281 0.94128 1.00252 1.18508 0.93768 0.85403 0.90867 1.83529 1.72612 1.18254 1.36618 1.20789 1.48281 0.92625 0.85082 0.87238 1.24472 0.95823 0.95317 0.98102 1.69635 1.45538 1.10923 1.24452 0.86201 0.79550 0.78708 0.82531 1.19698 1.20515 1.18455 0.91772 0.91139 0.91846 0.91819 0.91142 0.91697 0.91864 0.91177 0.91915 0.74871 0.83841 0.85516 0.83179 0.90724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.43 37.16 0.31 -0.83 16 2 C 0.04 0.34 0.95 -157.29 -0.15 0.19 16 3 C -0.14 -1.15 8.43 37.16 0.31 -0.83 16 4 C -0.14 -1.04 8.43 37.16 0.31 -0.73 16 5 C -0.07 -0.92 11.77 -37.12 -0.44 -1.36 16 6 C -0.21 -3.29 13.62 -38.84 -0.53 -3.82 16 7 C 0.63 11.10 7.50 -14.33 -0.11 10.99 16 8 O -0.52 -10.22 14.50 5.25 0.08 -10.14 16 9 N -0.64 -11.41 5.18 -11.91 -0.06 -11.47 16 10 C 0.05 1.05 6.33 -83.48 -0.53 0.52 16 11 C -0.05 -0.86 8.69 -39.42 -0.34 -1.21 16 12 C -0.22 -3.93 10.02 -39.49 -0.40 -4.32 16 13 C 0.13 2.61 7.29 -39.42 -0.29 2.32 16 14 F -0.15 -2.77 17.26 2.25 0.04 -2.73 16 15 C -0.25 -5.25 9.14 -39.36 -0.36 -5.61 16 16 C 0.17 3.72 6.67 -38.93 -0.26 3.46 16 17 O -0.21 -4.98 8.15 0.04 0.00 -4.98 16 18 C -0.39 -10.40 9.95 30.88 0.31 -10.09 16 19 H 0.11 3.00 5.44 -52.49 -0.29 2.71 16 20 C 0.07 1.79 5.49 -17.52 -0.10 1.69 16 21 N -0.87 -23.92 13.96 55.48 0.77 -23.15 16 22 Si 0.90 20.10 28.62 -169.99 -4.86 15.24 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.41 6.92 8.54 -40.82 -0.35 6.57 16 36 H 0.14 2.51 6.19 -52.49 -0.32 2.18 16 37 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 38 H 0.15 3.35 5.64 -52.49 -0.30 3.05 16 39 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 347.12 15.07 5.23 5.23 Total: -1.00 -29.02 347.12 -5.67 -34.68 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -4.62 Total: 6.95 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -2.24 Total: -9.62 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.71 Total: -34.62 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.08 Total: -15.12 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.04 Total: -2.73 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.86 Total: 15.24 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.02 -5.67 -34.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837469900.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.450 kcal (2) G-P(sol) polarization free energy of solvation -29.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds