Wall clock time and date at job start Tue Mar 31 2020 08:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47260 * 2 1 4 4 C 1.53001 * 109.47237 * 239.99776 * 2 1 3 5 5 C 1.47209 * 109.46964 * 119.99842 * 2 1 3 6 6 C 2.64603 * 109.46890 * 119.99815 * 2 1 3 7 7 C 4.07804 * 109.46954 * 119.99879 * 2 1 3 8 8 O 1.21635 * 120.00160 * 36.56490 * 7 6 5 9 9 N 1.34779 * 119.99646 * 216.83752 * 7 6 5 10 10 C 1.39993 * 119.99971 * 175.34841 * 9 7 6 11 11 C 1.38738 * 120.07678 * 34.61050 * 10 9 7 12 12 C 1.38176 * 120.01748 * 179.76936 * 11 10 9 13 13 C 1.38559 * 120.17895 * 0.51027 * 12 11 10 14 14 F 1.35107 * 119.92018 * 179.76680 * 13 12 11 15 15 C 1.38345 * 120.15998 * 359.74923 * 13 12 11 16 16 C 1.38739 * 119.97610 * 359.97438 * 15 13 12 17 17 O 1.35771 * 120.08712 * 180.02562 * 16 15 13 18 18 C 1.34811 * 116.99578 * 5.42771 * 17 16 15 19 19 H 1.07991 * 120.00514 * 354.95785 * 18 17 16 20 20 C 1.38644 * 119.99395 * 174.95294 * 18 17 16 21 21 N 1.31567 * 120.00050 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00085 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46806 * 89.99998 * 22 20 18 24 24 H 1.48497 * 109.47118 * 209.99691 * 22 20 18 25 25 H 1.48499 * 109.47294 * 330.00185 * 22 20 18 26 26 H 1.09004 * 109.47409 * 300.00371 * 1 2 3 27 27 H 1.08997 * 109.47097 * 60.00262 * 1 2 3 28 28 H 1.09001 * 109.47365 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47023 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.46851 * 299.99888 * 3 2 1 31 31 H 1.09007 * 109.46767 * 59.99758 * 3 2 1 32 32 H 1.09001 * 109.46967 * 300.00273 * 4 2 1 33 33 H 1.08997 * 109.47108 * 59.99969 * 4 2 1 34 34 H 1.08995 * 109.47037 * 180.02562 * 4 2 1 35 35 H 0.96998 * 120.00343 * 355.35369 * 9 7 6 36 36 H 1.08001 * 119.99234 * 0.02993 * 11 10 9 37 37 H 1.07999 * 119.91045 * 180.23675 * 12 11 10 38 38 H 1.07994 * 120.00998 * 180.02562 * 15 13 12 39 39 H 0.96992 * 120.00334 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0206 -0.6939 1.2020 6 6 2.4119 -1.2473 2.1605 7 6 2.8892 -1.9224 3.3298 8 8 2.6969 -3.1159 3.4641 9 7 3.5467 -1.2341 4.2840 10 6 3.9277 -1.8722 5.4704 11 6 4.3105 -3.2056 5.4507 12 6 4.6909 -3.8328 6.6217 13 6 4.6814 -3.1367 7.8196 14 9 5.0499 -3.7565 8.9622 15 6 4.2959 -1.8083 7.8486 16 6 3.9182 -1.1704 6.6759 17 8 3.5399 0.1333 6.7016 18 6 3.6605 0.7823 7.8770 19 1 3.9660 0.2443 8.7621 20 6 3.3922 2.1406 7.9494 21 7 3.5102 2.7743 9.0964 22 14 2.8630 3.0711 6.4185 23 1 1.3827 3.0373 6.3057 24 1 3.3201 4.4808 6.5133 25 1 3.4654 2.4348 5.2195 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 -1.7490 -1.2492 33 1 1.6767 -0.2075 -2.1392 34 1 3.1300 -0.7217 -1.2489 35 1 3.7558 -0.2966 4.1488 36 1 4.3152 -3.7522 4.5193 37 1 4.9922 -4.8698 6.6038 38 1 4.2898 -1.2679 8.7836 39 1 3.3222 3.7244 9.1472 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837469900.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:32:18 Heat of formation + Delta-G solvation = -54.033714 kcal Electronic energy + Delta-G solvation = -23822.336508 eV Core-core repulsion = 20032.006451 eV Total energy + Delta-G solvation = -3790.330057 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.90075 -41.84500 -40.40952 -38.54227 -38.17481 -35.81716 -34.52003 -33.44204 -31.31879 -30.23766 -28.22034 -28.20326 -27.42181 -25.66853 -23.89219 -23.09054 -21.87157 -20.25851 -20.00388 -19.38117 -18.42048 -17.35188 -17.09463 -16.97671 -16.63562 -16.27941 -15.99398 -15.89585 -15.64689 -15.30778 -15.23240 -15.18733 -15.03517 -14.30689 -13.97511 -13.70080 -13.36788 -13.35324 -13.18129 -12.78059 -12.67689 -12.62703 -12.47564 -12.33201 -12.28094 -12.19130 -11.73794 -11.59801 -11.36421 -11.33139 -11.18707 -10.97690 -9.70278 -8.97823 -8.55682 -6.30379 -0.08109 0.33103 0.51017 1.11788 1.30280 1.34812 1.47511 1.86906 2.22493 2.27418 2.55792 2.73867 2.93713 2.98333 3.30572 3.80672 3.91446 3.93752 3.94375 4.09882 4.19310 4.24676 4.44951 4.73264 4.74121 4.76731 4.82913 4.94970 4.95239 5.03575 5.06864 5.10605 5.18541 5.20708 5.30399 5.34437 5.36062 5.54434 5.75343 5.98631 6.08646 6.18474 6.75568 6.80911 7.37465 8.55062 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.010441 B = 0.004765 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.218138 B = 5875.055969 C = 8323.753861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.029 3.971 3 C -0.144 4.144 4 C -0.139 4.139 5 C -0.029 4.029 6 C -0.270 4.270 7 C 0.637 3.363 8 O -0.542 6.542 9 N -0.639 5.639 10 C 0.061 3.939 11 C -0.046 4.046 12 C -0.192 4.192 13 C 0.128 3.872 14 F -0.143 7.143 15 C -0.256 4.256 16 C 0.146 3.854 17 O -0.220 6.220 18 C -0.404 4.404 19 H 0.083 0.917 20 C 0.017 3.983 21 N -0.915 5.915 22 Si 0.965 3.035 23 H -0.269 1.269 24 H -0.268 1.268 25 H -0.248 1.248 26 H 0.054 0.946 27 H 0.099 0.901 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.060 0.940 35 H 0.420 0.580 36 H 0.159 0.841 37 H 0.165 0.835 38 H 0.131 0.869 39 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.332 -3.749 -20.796 21.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.029 3.971 3 C -0.201 4.201 4 C -0.196 4.196 5 C -0.031 4.031 6 C -0.273 4.273 7 C 0.426 3.574 8 O -0.422 6.422 9 N -0.282 5.282 10 C -0.034 4.034 11 C -0.066 4.066 12 C -0.212 4.212 13 C 0.108 3.892 14 F -0.122 7.122 15 C -0.277 4.277 16 C 0.094 3.906 17 O -0.127 6.127 18 C -0.480 4.480 19 H 0.101 0.899 20 C -0.183 4.183 21 N -0.554 5.554 22 Si 0.786 3.214 23 H -0.194 1.194 24 H -0.192 1.192 25 H -0.171 1.171 26 H 0.073 0.927 27 H 0.118 0.882 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.116 0.884 34 H 0.079 0.921 35 H 0.257 0.743 36 H 0.177 0.823 37 H 0.183 0.817 38 H 0.148 0.852 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.570 -4.232 -20.714 21.297 hybrid contribution 0.085 0.803 0.974 1.265 sum -2.485 -3.429 -19.739 20.188 Atomic orbital electron populations 1.21949 0.91048 1.03036 1.03915 1.18368 0.96955 0.94947 0.86846 1.21968 1.01830 0.92362 1.03915 1.21925 1.01696 1.00578 0.95412 1.23437 0.91724 0.94256 0.93688 1.20273 1.06674 1.03037 0.97334 1.14823 0.76729 0.85308 0.80503 1.90779 1.57960 1.14903 1.78520 1.42953 1.55230 1.15163 1.14880 1.17023 1.09477 0.93971 0.82879 1.20930 0.94606 0.91524 0.99584 1.20958 1.08327 1.02200 0.89709 1.17514 0.99109 0.90116 0.82467 1.91449 1.89128 1.82498 1.49081 1.20986 1.11866 0.95256 0.99545 1.18818 0.94866 0.85022 0.91936 1.83485 1.74746 1.19194 1.35232 1.20688 1.48852 0.93142 0.85325 0.89901 1.25279 0.95836 0.96005 1.01151 1.69722 1.47667 1.11513 1.26514 0.85301 0.79144 0.77803 0.79111 1.19431 1.19238 1.17126 0.92726 0.88231 0.92272 0.91982 0.88329 0.92699 0.92307 0.88375 0.92108 0.74288 0.82320 0.81713 0.85164 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.43 71.98 0.61 -1.24 16 2 C 0.03 0.44 0.95 -53.98 -0.05 0.39 16 3 C -0.14 -1.83 8.43 71.98 0.61 -1.23 16 4 C -0.14 -1.58 8.43 71.98 0.61 -0.97 16 5 C -0.03 -0.68 11.77 31.13 0.37 -0.32 16 6 C -0.27 -8.07 13.62 30.02 0.41 -7.66 16 7 C 0.64 22.09 7.50 85.49 0.64 22.73 16 8 O -0.54 -20.98 14.50 -4.14 -0.06 -21.04 16 9 N -0.64 -22.57 5.18 -309.83 -1.60 -24.17 16 10 C 0.06 2.37 6.33 38.26 0.24 2.61 16 11 C -0.05 -1.61 8.69 22.37 0.19 -1.42 16 12 C -0.19 -6.29 10.02 22.33 0.22 -6.06 16 13 C 0.13 4.85 7.29 22.37 0.16 5.01 16 14 F -0.14 -5.24 17.26 44.97 0.78 -4.46 16 15 C -0.26 -11.26 9.14 22.42 0.20 -11.06 16 16 C 0.15 6.55 6.67 22.69 0.15 6.70 16 17 O -0.22 -10.99 8.15 -22.77 -0.19 -11.18 16 18 C -0.40 -22.47 9.95 67.92 0.68 -21.79 16 19 H 0.08 4.90 5.44 -2.92 -0.02 4.88 16 20 C 0.02 0.94 5.49 84.83 0.47 1.41 16 21 N -0.92 -52.40 13.96 21.61 0.30 -52.10 16 22 Si 0.97 41.77 28.62 68.60 1.96 43.74 16 23 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 24 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 25 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 26 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.42 13.89 8.54 -92.71 -0.79 13.10 16 36 H 0.16 5.15 6.19 -2.91 -0.02 5.13 16 37 H 0.17 4.20 8.06 -2.91 -0.02 4.18 16 38 H 0.13 6.24 5.64 -2.91 -0.02 6.22 16 39 H 0.29 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -64.97 347.12 7.01 -57.97 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: 0.31 Total: 24.14 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: 5.51 Total: -12.88 kcal Atomic # 7 Polarization: -74.97 SS G_CDS: -1.30 Total: -76.27 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.25 Total: -32.22 kcal Atomic # 9 Polarization: -5.24 SS G_CDS: 0.78 Total: -4.46 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 1.96 Total: 43.74 kcal Total: -64.97 7.01 -57.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837469900.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.931 kcal (2) G-P(sol) polarization free energy of solvation -64.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds