Wall clock time and date at job start Tue Mar 31 2020 08:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47407 * 2 1 4 4 C 1.53005 * 109.47017 * 120.00070 * 2 1 3 5 5 H 1.09004 * 115.55996 * 274.31510 * 4 2 1 6 6 C 1.53067 * 117.49649 * 128.59944 * 4 2 1 7 7 C 1.52999 * 59.98596 * 252.51167 * 6 4 2 8 8 H 1.09002 * 117.49604 * 107.49860 * 7 6 4 9 9 N 1.46494 * 117.49860 * 252.49686 * 7 6 4 10 10 C 1.34779 * 119.99939 * 223.74701 * 9 7 6 11 11 O 1.21616 * 119.99697 * 359.97438 * 10 9 7 12 12 C 1.47427 * 120.00231 * 180.02562 * 10 9 7 13 13 C 1.39676 * 120.21437 * 359.97438 * 12 10 9 14 14 C 1.37804 * 119.94035 * 180.02562 * 13 12 10 15 15 C 1.38657 * 120.38004 * 0.27335 * 14 13 12 16 16 C 1.37906 * 120.44053 * 359.44916 * 15 14 13 17 17 C 1.39120 * 120.04745 * 0.54965 * 16 15 14 18 18 S 1.76201 * 120.19145 * 179.70563 * 17 16 15 19 19 C 1.76209 * 99.99712 * 6.85205 * 18 17 16 20 20 H 1.07998 * 119.99927 * 5.65954 * 19 18 17 21 21 C 1.38808 * 119.99474 * 185.65718 * 19 18 17 22 22 N 1.31557 * 119.99411 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 120.00151 * 359.97438 * 21 19 18 24 24 H 1.48507 * 109.47107 * 90.00361 * 23 21 19 25 25 H 1.48503 * 109.47137 * 209.99716 * 23 21 19 26 26 H 1.48494 * 109.47690 * 330.00052 * 23 21 19 27 27 H 1.08996 * 109.47253 * 300.00055 * 1 2 3 28 28 H 1.09001 * 109.46857 * 60.00452 * 1 2 3 29 29 H 1.09005 * 109.46991 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47542 * 239.99578 * 2 1 3 31 31 H 1.09002 * 109.47304 * 300.00133 * 3 2 1 32 32 H 1.09009 * 109.47304 * 59.99647 * 3 2 1 33 33 H 1.08999 * 109.47450 * 179.97438 * 3 2 1 34 34 H 1.09009 * 117.51291 * 145.03324 * 6 4 2 35 35 H 1.09001 * 117.49674 * 0.02562 * 6 4 2 36 36 H 0.96999 * 120.00545 * 43.74751 * 9 7 6 37 37 H 1.08004 * 120.03268 * 0.02562 * 13 12 10 38 38 H 1.08000 * 119.81320 * 180.02562 * 14 13 12 39 39 H 1.08005 * 119.78355 * 179.69922 * 15 14 13 40 40 H 1.08000 * 119.98146 * 180.25481 * 16 15 14 41 41 H 0.97005 * 119.99542 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 2.1270 -0.1061 2.1449 6 6 3.0742 -1.8322 1.0512 7 6 1.6356 -2.1852 1.4344 8 1 1.0060 -2.6344 0.6663 9 7 1.3952 -2.6529 2.8017 10 6 0.5861 -3.7084 3.0204 11 8 0.0552 -4.2721 2.0827 12 6 0.3437 -4.1787 4.3965 13 6 0.9506 -3.5342 5.4768 14 6 0.7205 -3.9789 6.7607 15 6 -0.1071 -5.0680 6.9877 16 6 -0.7189 -5.7125 5.9332 17 6 -0.4992 -5.2788 4.6297 18 16 -1.2728 -6.1043 3.2789 19 6 -2.3244 -7.2112 4.1586 20 1 -2.3967 -7.1473 5.2343 21 6 -3.0600 -8.1652 3.4689 22 7 -3.8455 -8.9912 4.1257 23 14 -2.9356 -8.2751 1.6084 24 1 -1.8432 -9.2111 1.2398 25 1 -4.2209 -8.7719 1.0548 26 1 -2.6438 -6.9299 1.0513 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4424 0.0005 34 1 3.8418 -1.9479 1.8165 35 1 3.3912 -2.0486 0.0310 36 1 1.8183 -2.2030 3.5497 37 1 1.5998 -2.6880 5.3062 38 1 1.1906 -3.4788 7.5945 39 1 -0.2769 -5.4114 7.9975 40 1 -1.3653 -6.5575 6.1189 41 1 -4.3599 -9.6577 3.6437 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838085674.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:42:29 Heat of formation + Delta-G solvation = -15.436741 kcal Electronic energy + Delta-G solvation = -21960.637693 eV Core-core repulsion = 18738.194503 eV Total energy + Delta-G solvation = -3222.443190 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.16312 -39.52912 -38.60848 -35.40145 -34.82898 -33.37877 -31.86727 -31.60652 -28.00047 -27.99142 -25.36534 -23.84751 -23.56796 -22.73998 -21.70261 -20.80267 -19.94766 -18.71512 -17.65937 -17.37156 -17.12094 -16.22560 -15.92733 -15.81806 -15.51054 -15.34167 -15.14949 -14.94085 -14.34780 -13.99387 -13.77883 -13.67962 -13.63900 -13.40790 -13.13428 -13.04178 -13.00932 -12.51486 -12.27811 -12.24065 -12.12260 -11.82723 -11.61747 -11.52229 -11.43052 -11.34813 -10.92937 -10.59066 -10.07395 -9.96052 -9.58732 -8.68202 -8.60734 -6.31907 -0.05420 0.45762 0.99280 1.22005 1.39431 1.62053 1.91077 2.08460 2.14814 2.65855 2.75820 2.87235 3.04120 3.71283 3.80810 3.84275 3.95844 4.03120 4.16950 4.22224 4.42621 4.46504 4.54757 4.58144 4.68758 4.76544 4.84520 4.87251 4.97115 5.00685 5.05444 5.09264 5.23358 5.29642 5.33719 5.44532 5.47318 5.51369 5.60094 5.60980 5.66070 6.03832 6.15425 6.58542 6.83245 7.30285 8.50552 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.014481 B = 0.004178 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.154843 B = 6700.954253 C = 8216.341652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.066 4.066 3 C -0.139 4.139 4 C -0.133 4.133 5 H 0.122 0.878 6 C -0.173 4.173 7 C 0.058 3.942 8 H 0.106 0.894 9 N -0.683 5.683 10 C 0.552 3.448 11 O -0.556 6.556 12 C -0.174 4.174 13 C -0.054 4.054 14 C -0.147 4.147 15 C -0.071 4.071 16 C -0.170 4.170 17 C -0.054 4.054 18 S 0.022 5.978 19 C -0.585 4.585 20 H 0.080 0.920 21 C 0.054 3.946 22 N -0.907 5.907 23 Si 0.906 3.094 24 H -0.257 1.257 25 H -0.252 1.252 26 H -0.241 1.241 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.034 0.966 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.414 0.586 37 H 0.166 0.834 38 H 0.170 0.830 39 H 0.147 0.853 40 H 0.113 0.887 41 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.117 21.066 -1.813 26.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.084 4.084 3 C -0.196 4.196 4 C -0.153 4.153 5 H 0.140 0.860 6 C -0.211 4.211 7 C -0.048 4.048 8 H 0.124 0.876 9 N -0.334 5.334 10 C 0.341 3.659 11 O -0.436 6.436 12 C -0.187 4.187 13 C -0.073 4.073 14 C -0.169 4.169 15 C -0.092 4.092 16 C -0.195 4.195 17 C -0.171 4.171 18 S 0.277 5.723 19 C -0.732 4.732 20 H 0.098 0.902 21 C -0.152 4.152 22 N -0.543 5.543 23 Si 0.727 3.273 24 H -0.182 1.182 25 H -0.176 1.176 26 H -0.166 1.166 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.130 0.870 35 H 0.124 0.876 36 H 0.253 0.747 37 H 0.184 0.816 38 H 0.188 0.812 39 H 0.165 0.835 40 H 0.130 0.870 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 15.556 20.456 -3.870 25.989 hybrid contribution -0.775 -1.053 1.132 1.729 sum 14.781 19.403 -2.738 24.545 Atomic orbital electron populations 1.21826 0.95748 1.00931 1.02023 1.20730 0.94987 0.96997 0.95718 1.21762 1.01441 0.94182 1.02196 1.22981 1.01756 0.89709 1.00810 0.85990 1.23687 0.92020 1.01507 1.03904 1.21633 0.99675 0.98393 0.85088 0.87568 1.44974 1.48390 1.31588 1.08470 1.18387 0.78711 0.80260 0.88545 1.90738 1.50466 1.57315 1.45064 1.19512 1.05616 0.99633 0.93958 1.21482 0.96495 0.98134 0.91229 1.21391 1.00363 0.97583 0.97580 1.21553 0.94306 0.94759 0.98563 1.21469 1.03369 1.02497 0.92192 1.22522 0.98455 0.97776 0.98352 1.84054 1.42527 1.37736 1.07938 1.23651 1.30356 1.21161 0.98020 0.90211 1.25571 0.93206 0.93312 1.03146 1.69988 1.26817 1.19100 1.38418 0.86036 0.79758 0.81337 0.80165 1.18184 1.17553 1.16555 0.92667 0.91878 0.94638 0.91050 0.92201 0.92319 0.91748 0.87027 0.87562 0.74740 0.81631 0.81228 0.83482 0.86971 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.03 71.98 0.65 -2.04 16 2 C -0.07 -0.97 3.07 -10.79 -0.03 -1.00 16 3 C -0.14 -1.52 9.17 71.98 0.66 -0.86 16 4 C -0.13 -2.03 5.08 -10.77 -0.05 -2.09 16 5 H 0.12 1.49 8.11 -2.39 -0.02 1.47 16 6 C -0.17 -2.70 10.11 30.62 0.31 -2.39 16 7 C 0.06 1.32 5.63 44.99 0.25 1.58 16 8 H 0.11 3.14 6.86 -2.39 -0.02 3.12 16 9 N -0.68 -16.85 5.52 -445.80 -2.46 -19.30 16 10 C 0.55 20.10 7.75 86.66 0.67 20.77 16 11 O -0.56 -25.63 13.34 -4.08 -0.05 -25.69 16 12 C -0.17 -6.36 5.89 -19.95 -0.12 -6.48 16 13 C -0.05 -1.33 9.53 22.51 0.21 -1.12 16 14 C -0.15 -3.43 10.02 22.27 0.22 -3.20 16 15 C -0.07 -2.17 10.02 22.29 0.22 -1.95 16 16 C -0.17 -7.28 9.22 22.40 0.21 -7.08 16 17 C -0.05 -2.47 6.15 23.04 0.14 -2.33 16 18 S 0.02 1.19 16.53 -56.49 -0.93 0.25 16 19 C -0.59 -35.55 9.54 67.96 0.65 -34.90 16 20 H 0.08 5.08 5.21 -2.91 -0.02 5.06 16 21 C 0.05 3.26 5.50 84.87 0.47 3.73 16 22 N -0.91 -56.09 13.96 21.65 0.30 -55.79 16 23 Si 0.91 45.86 27.74 68.60 1.90 47.76 16 24 H -0.26 -12.62 7.11 99.48 0.71 -11.91 16 25 H -0.25 -11.80 7.11 99.48 0.71 -11.09 16 26 H -0.24 -12.41 6.74 99.48 0.67 -11.74 16 27 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.03 0.81 7.29 -2.38 -0.02 0.80 16 30 H 0.07 1.07 7.90 -2.39 -0.02 1.05 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.11 1.56 8.05 -2.39 -0.02 1.54 16 36 H 0.41 6.86 6.86 -92.71 -0.64 6.22 16 37 H 0.17 2.36 6.40 -2.91 -0.02 2.34 16 38 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 39 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 40 H 0.11 5.54 5.03 -2.91 -0.01 5.53 16 41 H 0.28 15.88 8.31 -92.70 -0.77 15.11 16 Total: -1.00 -77.23 348.76 3.60 -73.63 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.38 Total: 18.49 kcal Atomic # 6 Polarization: -43.82 SS G_CDS: 4.46 Total: -39.35 kcal Atomic # 7 Polarization: -72.94 SS G_CDS: -2.16 Total: -75.10 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.05 Total: -25.69 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.90 Total: 47.76 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -0.93 Total: 0.25 kcal Total: -77.23 3.60 -73.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838085674.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.193 kcal (2) G-P(sol) polarization free energy of solvation -77.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds