Wall clock time and date at job start Tue Mar 31 2020 08:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38278 * 119.92616 * 2 1 4 4 C 1.38114 * 120.06637 * 179.97438 * 3 2 1 5 5 C 1.38874 * 119.93302 * 359.97209 * 4 3 2 6 6 N 1.39920 * 120.07658 * 179.97438 * 5 4 3 7 7 C 1.45754 * 117.95108 * 269.28745 * 6 5 4 8 8 C 1.52915 * 110.48984 * 160.92001 * 7 6 5 9 9 C 1.53350 * 108.67315 * 50.75354 * 8 7 6 10 10 C 1.53067 * 108.42727 * 292.46823 * 9 8 7 11 11 H 1.08997 * 109.40184 * 288.85799 * 10 9 8 12 12 S 1.81400 * 109.40227 * 169.02837 * 10 9 8 13 13 C 1.81399 * 102.99859 * 174.82832 * 12 10 9 14 14 C 1.50703 * 109.47074 * 179.97438 * 13 12 10 15 15 H 1.07996 * 119.99644 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00034 * 179.97438 * 14 13 12 17 17 N 1.31508 * 119.99778 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 119.99871 * 0.02562 * 16 14 13 19 19 H 1.48507 * 109.46849 * 269.99524 * 18 16 14 20 20 H 1.48492 * 109.47477 * 29.99557 * 18 16 14 21 21 H 1.48497 * 109.46937 * 150.00226 * 18 16 14 22 22 C 1.33240 * 117.97942 * 89.35882 * 6 5 4 23 23 O 1.21284 * 118.15863 * 2.21067 * 22 6 5 24 24 C 1.38878 * 119.85475 * 0.25665 * 5 4 3 25 25 C 1.38112 * 119.92942 * 359.51342 * 24 5 4 26 26 H 1.09001 * 109.47002 * 90.00081 * 1 2 3 27 27 H 1.08999 * 109.47099 * 210.00314 * 1 2 3 28 28 H 1.09005 * 109.47223 * 330.00282 * 1 2 3 29 29 H 1.07994 * 119.97184 * 359.97099 * 3 2 1 30 30 H 1.07999 * 120.03626 * 179.97438 * 4 3 2 31 31 H 1.08997 * 109.29775 * 40.60987 * 7 6 5 32 32 H 1.08999 * 109.29744 * 281.23812 * 7 6 5 33 33 H 1.09004 * 109.60641 * 290.99892 * 8 7 6 34 34 H 1.08998 * 109.74173 * 170.58945 * 8 7 6 35 35 H 1.09000 * 109.67188 * 172.73072 * 9 8 7 36 36 H 1.09000 * 109.67105 * 52.20708 * 9 8 7 37 37 H 1.08997 * 109.47474 * 59.99987 * 13 12 10 38 38 H 1.08999 * 109.47117 * 300.00240 * 13 12 10 39 39 H 0.97008 * 119.99656 * 180.02562 * 17 16 14 40 40 H 1.08007 * 120.03585 * 179.74839 * 24 5 4 41 41 H 1.07994 * 119.96629 * 180.23184 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2018 0.0005 5 6 4.2739 0.0000 0.0017 6 7 5.6731 -0.0001 0.0017 7 6 6.3563 -0.0173 -1.2857 8 6 7.8030 0.4529 -1.1303 9 6 8.4574 -0.3397 0.0077 10 6 7.7919 0.0662 1.3251 11 1 8.0949 1.0801 1.5864 12 16 8.3085 -1.0743 2.6376 13 6 7.5606 -0.3516 4.1239 14 6 7.9034 -1.1993 5.3218 15 1 8.5102 -2.0846 5.2009 16 6 7.4425 -0.8448 6.5719 17 7 7.7422 -1.5843 7.6173 18 14 6.3925 0.6860 6.7807 19 1 7.2690 1.8552 7.0453 20 1 5.6115 0.9236 5.5403 21 1 5.4624 0.4962 7.9226 22 6 6.2982 0.0142 1.1782 23 8 5.6231 -0.0148 2.1854 24 6 3.5780 -1.2018 -0.0032 25 6 2.1969 -1.1984 0.0011 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.6553 2.1327 -0.0005 30 1 4.1163 2.1381 0.0001 31 1 5.8353 0.6431 -1.9789 32 1 6.3480 -1.0318 -1.6844 33 1 7.8183 1.5163 -0.8912 34 1 8.3484 0.2789 -2.0579 35 1 9.5224 -0.1113 0.0489 36 1 8.3169 -1.4074 -0.1607 37 1 6.4779 -0.3136 4.0041 38 1 7.9455 0.6576 4.2703 39 1 7.4175 -1.3350 8.4968 40 1 4.1163 -2.1382 -0.0064 41 1 1.6552 -2.1327 0.0012 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840215301.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:04 Heat of formation + Delta-G solvation = -8.091770 kcal Electronic energy + Delta-G solvation = -22626.748303 eV Core-core repulsion = 19404.623615 eV Total energy + Delta-G solvation = -3222.124689 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.93345 -38.82596 -36.47736 -34.55644 -32.89058 -31.49701 -31.05099 -29.68590 -29.15973 -26.68641 -24.67587 -22.92589 -22.77034 -22.31471 -21.22280 -18.98791 -17.55315 -16.82642 -16.49393 -16.20479 -15.65808 -15.46467 -15.02295 -14.50229 -14.27424 -13.89782 -13.87033 -13.83735 -13.54141 -13.52835 -13.26375 -12.43566 -12.40747 -12.31939 -12.04483 -11.97050 -11.73465 -11.54696 -11.32777 -11.22568 -11.09400 -10.67067 -10.25635 -9.90695 -9.57709 -9.56766 -9.01456 -8.90858 -8.85307 -8.61984 -8.58040 -6.80938 -6.06585 -4.06666 1.15549 1.33017 2.16174 2.88072 3.02178 3.32577 3.39556 3.51898 3.59644 3.74921 4.45822 4.54510 4.58572 4.66035 4.72454 4.75108 4.79126 4.90998 5.16217 5.22412 5.25907 5.27856 5.31268 5.33806 5.40166 5.51513 5.58757 5.60986 5.64337 5.77625 5.85587 5.94600 6.06825 6.17707 6.46213 6.48083 6.53081 6.80928 6.98588 7.13905 7.40100 7.61020 8.37341 8.41707 8.94619 9.50990 11.05558 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.012330 B = 0.005021 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.277565 B = 5574.977801 C = 7212.831794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.087 4.087 3 C -0.115 4.115 4 C -0.106 4.106 5 C 0.137 3.863 6 N -0.569 5.569 7 C 0.117 3.883 8 C -0.131 4.131 9 C -0.100 4.100 10 C -0.089 4.089 11 H 0.111 0.889 12 S -0.224 6.224 13 C 0.039 3.961 14 C -0.511 4.511 15 H 0.080 0.920 16 C 0.081 3.919 17 N -0.896 5.896 18 Si 0.871 3.129 19 H -0.275 1.275 20 H -0.258 1.258 21 H -0.284 1.284 22 C 0.521 3.479 23 O -0.510 6.510 24 C -0.101 4.101 25 C -0.113 4.113 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.124 0.876 30 H 0.121 0.879 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.023 0.977 39 H 0.266 0.734 40 H 0.124 0.876 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.747 5.945 -23.717 25.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.087 4.087 3 C -0.133 4.133 4 C -0.126 4.126 5 C 0.047 3.953 6 N -0.301 5.301 7 C -0.005 4.005 8 C -0.170 4.170 9 C -0.139 4.139 10 C -0.220 4.220 11 H 0.129 0.871 12 S 0.005 5.995 13 C -0.108 4.108 14 C -0.550 4.550 15 H 0.098 0.902 16 C -0.123 4.123 17 N -0.534 5.534 18 Si 0.697 3.303 19 H -0.201 1.201 20 H -0.182 1.182 21 H -0.209 1.209 22 C 0.307 3.693 23 O -0.383 6.383 24 C -0.120 4.120 25 C -0.131 4.131 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.142 0.858 30 H 0.139 0.861 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.041 0.959 39 H 0.076 0.924 40 H 0.142 0.858 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.417 4.987 -23.021 25.013 hybrid contribution -1.125 1.877 0.443 2.233 sum -9.542 6.864 -22.578 25.454 Atomic orbital electron populations 1.20790 0.91122 1.02952 1.02148 1.19955 0.96153 0.93141 0.99419 1.20870 0.93472 0.97667 1.01335 1.21246 0.94343 0.97321 0.99648 1.17523 0.82865 0.93105 1.01802 1.44932 1.03716 1.75055 1.06426 1.21448 0.93121 1.01817 0.84132 1.21907 0.94396 1.00865 0.99844 1.21480 1.00518 1.01189 0.90679 1.23272 0.93034 1.05108 1.00605 0.87136 1.86658 1.70073 1.39783 1.02952 1.21758 1.00258 0.97280 0.91542 1.20503 1.34022 1.11369 0.89144 0.90157 1.24786 0.95483 0.96702 0.95300 1.69874 1.45602 1.38675 0.99260 0.86875 0.81144 0.83565 0.78668 1.20092 1.18186 1.20932 1.20407 0.90510 0.75825 0.82549 1.90791 1.65553 1.47237 1.34761 1.21327 0.94340 0.97613 0.98760 1.20913 0.93535 0.97716 1.00953 0.91227 0.91430 0.91532 0.85843 0.86116 0.90703 0.91496 0.90827 0.89182 0.89590 0.90186 0.91152 0.95851 0.92409 0.85763 0.85700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 2 C -0.09 -0.96 5.88 -104.59 -0.62 -1.58 16 3 C -0.11 -1.32 9.69 -39.61 -0.38 -1.70 16 4 C -0.11 -1.38 9.97 -39.39 -0.39 -1.78 16 5 C 0.14 1.95 4.00 -83.69 -0.34 1.62 16 6 N -0.57 -8.00 2.84 -114.68 -0.33 -8.33 16 7 C 0.12 1.11 6.35 -4.49 -0.03 1.08 16 8 C -0.13 -1.09 6.02 -26.59 -0.16 -1.25 16 9 C -0.10 -1.17 5.33 -26.52 -0.14 -1.31 16 10 C -0.09 -1.48 2.91 -28.10 -0.08 -1.56 16 11 H 0.11 1.76 8.14 -51.92 -0.42 1.34 16 12 S -0.22 -4.96 20.89 -107.50 -2.25 -7.20 16 13 C 0.04 1.05 4.27 36.01 0.15 1.20 16 14 C -0.51 -15.61 9.68 -34.44 -0.33 -15.95 16 15 H 0.08 2.64 7.96 -52.49 -0.42 2.22 16 16 C 0.08 2.48 5.47 -17.82 -0.10 2.38 16 17 N -0.90 -28.46 13.96 55.43 0.77 -27.69 16 18 Si 0.87 22.89 27.47 -169.99 -4.67 18.22 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.26 -6.84 6.54 56.52 0.37 -6.47 16 21 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 22 C 0.52 9.39 7.01 -11.92 -0.08 9.31 16 23 O -0.51 -11.75 13.33 5.55 0.07 -11.67 16 24 C -0.10 -1.38 9.97 -39.39 -0.39 -1.77 16 25 C -0.11 -1.33 9.69 -39.61 -0.38 -1.72 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 28 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 29 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 37 H 0.07 2.00 4.79 -51.93 -0.25 1.75 16 38 H 0.02 0.61 7.57 -51.92 -0.39 0.22 16 39 H 0.27 7.86 8.31 -40.82 -0.34 7.52 16 40 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 41 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 347.55 15.07 5.24 5.24 Total: -1.00 -36.14 347.55 -10.20 -46.35 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -6.13 Total: -1.35 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -2.92 Total: -13.57 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.45 Total: -36.01 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.07 Total: -11.67 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -4.67 Total: 18.22 kcal Atomic # 16 Polarization: -4.96 SS G_CDS: -2.25 Total: -7.20 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -36.14 -10.20 -46.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840215301.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.256 kcal (2) G-P(sol) polarization free energy of solvation -36.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds