Wall clock time and date at job start Tue Mar 31 2020 08:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38278 * 119.92616 * 2 1 4 4 C 1.38114 * 120.06637 * 179.97438 * 3 2 1 5 5 C 1.38874 * 119.93302 * 359.97209 * 4 3 2 6 6 N 1.39920 * 120.07658 * 179.97438 * 5 4 3 7 7 C 1.45754 * 117.95108 * 269.28745 * 6 5 4 8 8 C 1.52915 * 110.48984 * 160.92001 * 7 6 5 9 9 C 1.53350 * 108.67315 * 50.75354 * 8 7 6 10 10 C 1.53067 * 108.42727 * 292.46823 * 9 8 7 11 11 H 1.08997 * 109.40184 * 288.85799 * 10 9 8 12 12 S 1.81400 * 109.40227 * 169.02837 * 10 9 8 13 13 C 1.81399 * 102.99859 * 174.82832 * 12 10 9 14 14 C 1.50703 * 109.47074 * 179.97438 * 13 12 10 15 15 H 1.07996 * 119.99644 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00034 * 179.97438 * 14 13 12 17 17 N 1.31508 * 119.99778 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 119.99871 * 0.02562 * 16 14 13 19 19 H 1.48507 * 109.46849 * 269.99524 * 18 16 14 20 20 H 1.48492 * 109.47477 * 29.99557 * 18 16 14 21 21 H 1.48497 * 109.46937 * 150.00226 * 18 16 14 22 22 C 1.33240 * 117.97942 * 89.35882 * 6 5 4 23 23 O 1.21284 * 118.15863 * 2.21067 * 22 6 5 24 24 C 1.38878 * 119.85475 * 0.25665 * 5 4 3 25 25 C 1.38112 * 119.92942 * 359.51342 * 24 5 4 26 26 H 1.09001 * 109.47002 * 90.00081 * 1 2 3 27 27 H 1.08999 * 109.47099 * 210.00314 * 1 2 3 28 28 H 1.09005 * 109.47223 * 330.00282 * 1 2 3 29 29 H 1.07994 * 119.97184 * 359.97099 * 3 2 1 30 30 H 1.07999 * 120.03626 * 179.97438 * 4 3 2 31 31 H 1.08997 * 109.29775 * 40.60987 * 7 6 5 32 32 H 1.08999 * 109.29744 * 281.23812 * 7 6 5 33 33 H 1.09004 * 109.60641 * 290.99892 * 8 7 6 34 34 H 1.08998 * 109.74173 * 170.58945 * 8 7 6 35 35 H 1.09000 * 109.67188 * 172.73072 * 9 8 7 36 36 H 1.09000 * 109.67105 * 52.20708 * 9 8 7 37 37 H 1.08997 * 109.47474 * 59.99987 * 13 12 10 38 38 H 1.08999 * 109.47117 * 300.00240 * 13 12 10 39 39 H 0.97008 * 119.99656 * 180.02562 * 17 16 14 40 40 H 1.08007 * 120.03585 * 179.74839 * 24 5 4 41 41 H 1.07994 * 119.96629 * 180.23184 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2018 0.0005 5 6 4.2739 0.0000 0.0017 6 7 5.6731 -0.0001 0.0017 7 6 6.3563 -0.0173 -1.2857 8 6 7.8030 0.4529 -1.1303 9 6 8.4574 -0.3397 0.0077 10 6 7.7919 0.0662 1.3251 11 1 8.0949 1.0801 1.5864 12 16 8.3085 -1.0743 2.6376 13 6 7.5606 -0.3516 4.1239 14 6 7.9034 -1.1993 5.3218 15 1 8.5102 -2.0846 5.2009 16 6 7.4425 -0.8448 6.5719 17 7 7.7422 -1.5843 7.6173 18 14 6.3925 0.6860 6.7807 19 1 7.2690 1.8552 7.0453 20 1 5.6115 0.9236 5.5403 21 1 5.4624 0.4962 7.9226 22 6 6.2982 0.0142 1.1782 23 8 5.6231 -0.0148 2.1854 24 6 3.5780 -1.2018 -0.0032 25 6 2.1969 -1.1984 0.0011 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.6553 2.1327 -0.0005 30 1 4.1163 2.1381 0.0001 31 1 5.8353 0.6431 -1.9789 32 1 6.3480 -1.0318 -1.6844 33 1 7.8183 1.5163 -0.8912 34 1 8.3484 0.2789 -2.0579 35 1 9.5224 -0.1113 0.0489 36 1 8.3169 -1.4074 -0.1607 37 1 6.4779 -0.3136 4.0041 38 1 7.9455 0.6576 4.2703 39 1 7.4175 -1.3350 8.4968 40 1 4.1163 -2.1382 -0.0064 41 1 1.6552 -2.1327 0.0012 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840215301.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:04 Heat of formation + Delta-G solvation = -29.822832 kcal Electronic energy + Delta-G solvation = -22627.690633 eV Core-core repulsion = 19404.623615 eV Total energy + Delta-G solvation = -3223.067018 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.07769 -39.83015 -37.67145 -35.54481 -35.22699 -32.38536 -31.97627 -31.42478 -30.74993 -27.53872 -25.81232 -24.42415 -23.90199 -23.73675 -22.18061 -20.03234 -19.10533 -18.66233 -17.79001 -17.52379 -16.89573 -16.50607 -16.36871 -16.03773 -15.52516 -15.24672 -15.00964 -14.91360 -14.58263 -14.49511 -14.44918 -14.38377 -14.09876 -13.34131 -13.14524 -13.06832 -12.85112 -12.72244 -12.52523 -12.33536 -12.15603 -12.13583 -11.93760 -11.81127 -11.61412 -11.09949 -10.92014 -10.68475 -9.99391 -9.94006 -9.53990 -8.61471 -8.43049 -6.49518 0.20542 0.38696 0.63572 1.22984 1.26611 1.42623 1.54718 1.72638 2.01847 2.24675 2.67790 2.90549 3.40648 3.62998 3.76528 3.86485 3.95466 3.97358 4.00261 4.14858 4.35459 4.42252 4.45243 4.49903 4.64651 4.72987 4.75589 4.77597 4.85036 4.93762 5.00096 5.00649 5.06000 5.10885 5.24722 5.31348 5.34255 5.48890 5.59813 5.60497 6.01813 6.03493 6.23564 6.51506 7.07772 7.12305 8.72911 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.012330 B = 0.005021 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.277565 B = 5574.977801 C = 7212.831794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.088 4.088 3 C -0.118 4.118 4 C -0.118 4.118 5 C 0.110 3.890 6 N -0.556 5.556 7 C 0.105 3.895 8 C -0.118 4.118 9 C -0.096 4.096 10 C -0.075 4.075 11 H 0.120 0.880 12 S -0.248 6.248 13 C 0.043 3.957 14 C -0.527 4.527 15 H 0.040 0.960 16 C 0.027 3.973 17 N -0.936 5.936 18 Si 0.943 3.057 19 H -0.254 1.254 20 H -0.265 1.265 21 H -0.271 1.271 22 C 0.515 3.485 23 O -0.572 6.572 24 C -0.122 4.122 25 C -0.120 4.120 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.149 0.851 30 H 0.127 0.873 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.132 0.868 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.053 0.947 38 H 0.026 0.974 39 H 0.273 0.727 40 H 0.116 0.884 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.936 8.033 -26.555 29.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.088 4.088 3 C -0.136 4.136 4 C -0.137 4.137 5 C 0.020 3.980 6 N -0.286 5.286 7 C -0.015 4.015 8 C -0.157 4.157 9 C -0.134 4.134 10 C -0.207 4.207 11 H 0.138 0.862 12 S -0.018 6.018 13 C -0.105 4.105 14 C -0.566 4.566 15 H 0.058 0.942 16 C -0.174 4.174 17 N -0.575 5.575 18 Si 0.766 3.234 19 H -0.179 1.179 20 H -0.190 1.190 21 H -0.196 1.196 22 C 0.302 3.698 23 O -0.451 6.451 24 C -0.141 4.141 25 C -0.138 4.138 26 H 0.107 0.893 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.167 0.833 30 H 0.145 0.855 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.150 0.850 35 H 0.122 0.878 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.045 0.955 39 H 0.082 0.918 40 H 0.135 0.865 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.589 7.067 -25.910 28.517 hybrid contribution -0.787 1.153 1.168 1.821 sum -10.376 8.220 -24.742 28.060 Atomic orbital electron populations 1.20852 0.88733 1.03657 1.03567 1.20365 0.97937 0.92632 0.97896 1.21226 0.93062 0.98995 1.00346 1.21408 0.95248 0.97055 1.00007 1.17771 0.82971 0.93889 1.03353 1.44959 1.04083 1.72731 1.06803 1.21869 0.93912 1.03451 0.82270 1.21941 0.93329 1.00491 0.99924 1.21583 1.01451 1.01548 0.88865 1.23441 0.92988 1.03898 1.00334 0.86224 1.86451 1.69729 1.42302 1.03294 1.21410 0.99513 0.96828 0.92707 1.20724 1.33709 1.10801 0.91367 0.94207 1.25714 0.96660 1.00142 0.94835 1.69997 1.46864 1.40656 1.00017 0.85759 0.79477 0.79787 0.78393 1.17866 1.19006 1.19553 1.20570 0.90777 0.75426 0.83012 1.90757 1.66734 1.50496 1.37064 1.21423 0.95385 0.97268 1.00022 1.21204 0.93007 0.99126 1.00494 0.89320 0.90959 0.90633 0.83349 0.85530 0.88178 0.90260 0.90034 0.85038 0.87808 0.90650 0.92879 0.95548 0.91776 0.86542 0.83895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 10.01 71.24 0.71 -0.77 16 2 C -0.09 -1.79 5.88 -19.84 -0.12 -1.91 16 3 C -0.12 -2.48 9.69 22.25 0.22 -2.26 16 4 C -0.12 -2.94 9.97 22.39 0.22 -2.72 16 5 C 0.11 3.08 4.00 38.16 0.15 3.23 16 6 N -0.56 -15.06 2.84 -635.98 -1.81 -16.86 16 7 C 0.11 1.68 6.35 86.49 0.55 2.23 16 8 C -0.12 -1.48 6.02 30.68 0.18 -1.29 16 9 C -0.10 -1.98 5.33 30.73 0.16 -1.82 16 10 C -0.08 -2.44 2.91 29.71 0.09 -2.35 16 11 H 0.12 3.67 8.14 -2.39 -0.02 3.65 16 12 S -0.25 -11.24 20.89 -56.49 -1.18 -12.42 16 13 C 0.04 2.40 4.27 71.24 0.30 2.70 16 14 C -0.53 -33.71 9.68 25.60 0.25 -33.47 16 15 H 0.04 2.79 7.96 -2.91 -0.02 2.76 16 16 C 0.03 1.67 5.47 84.66 0.46 2.14 16 17 N -0.94 -61.18 13.96 21.45 0.30 -60.88 16 18 Si 0.94 48.36 27.47 68.60 1.88 50.25 16 19 H -0.25 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.27 -13.91 6.54 99.48 0.65 -13.26 16 21 H -0.27 -13.19 7.11 99.48 0.71 -12.49 16 22 C 0.52 18.56 7.01 87.73 0.62 19.17 16 23 O -0.57 -27.15 13.33 -3.04 -0.04 -27.19 16 24 C -0.12 -3.32 9.97 22.39 0.22 -3.10 16 25 C -0.12 -2.73 9.69 22.25 0.22 -2.52 16 26 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.07 0.91 8.08 -2.39 -0.02 0.89 16 28 H 0.07 0.89 8.08 -2.38 -0.02 0.87 16 29 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 30 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 31 H 0.10 1.17 8.08 -2.39 -0.02 1.15 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 33 H 0.08 0.98 8.12 -2.38 -0.02 0.96 16 34 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.07 1.66 8.10 -2.39 -0.02 1.65 16 37 H 0.05 3.14 4.79 -2.39 -0.01 3.12 16 38 H 0.03 1.41 7.57 -2.39 -0.02 1.39 16 39 H 0.27 16.42 8.31 -92.70 -0.77 15.65 16 40 H 0.12 3.21 8.06 -2.91 -0.02 3.19 16 41 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -83.91 347.55 4.35 -79.56 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 0.95 Total: 10.28 kcal Atomic # 6 Polarization: -26.98 SS G_CDS: 4.24 Total: -22.74 kcal Atomic # 7 Polarization: -76.23 SS G_CDS: -1.51 Total: -77.74 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -0.04 Total: -27.19 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 1.88 Total: 50.25 kcal Atomic # 16 Polarization: -11.24 SS G_CDS: -1.18 Total: -12.42 kcal Total: -83.91 4.35 -79.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840215301.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.741 kcal (2) G-P(sol) polarization free energy of solvation -83.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds